mRNA_H-elongata_contig54390.12813.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54390.12813.1
Unique NamemRNA_H-elongata_contig54390.12813.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Match: A0A6H5J677_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J677_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 2.470e-87
Identity = 164/304 (53.95%), Postives = 199/304 (65.46%), Query Frame = 1
Query:   10 SRLMPSSIYDLLETRRVVLELSEVLDLASDICGGLAYLHGLSPSIVHRDLSSRNILYDGHTAKLADLGQAKAMGLAAAGSGSRQTAMPGAMVYAAPEVLTGRYTTSIDLFSFGVLLAQLITGEYPRLDKRKEQARTEAGTRFPLLKPLLESCLSLHAEDRPSASETMCTLERFRADPCAYHRAEHGAGILADRWFQAEQKERCKALEARLYLHERRLSAEIGRWKEEADRVDNLSTRIEATKRERDDVL---------------------KSRGEELEESIAGVLSVLDKERSEHGAIRRELEE 858
            + LMPSS+YDLLETR V LE  EVLDLASDI  GL Y+HG  P+IVHRDLSSRN+LYDG TAKLADLGQAKAMG+A+A  G++QTAMPGAMV                         +L+   +P+            G RF LLKPLLESCL LHAEDRP+A+E +  LE  RADPCAYH A HGAGILADRWFQ EQKE+ + LEAR+ +HERRLSAE+GRWKEEADR D +S +I A + ERD  +                     ++R EEL++S+A  L+ L++ERS    I+ +LEE
Sbjct:   32 TELMPSSVYDLLETRGVSLEQHEVLDLASDITSGLVYIHGQRPAIVHRDLSSRNVLYDGRTAKLADLGQAKAMGVASAVGGTQQTAMPGAMV------------------------GKLLEFSFPK-----------RGDRFSLLKPLLESCLRLHAEDRPAAAEALRALEALRADPCAYHPAGHGAGILADRWFQEEQKEKTRGLEARVRVHERRLSAEVGRWKEEADRADEMSGKIGAAESERDAAVTRGAKTTTFSSPCATDAIIPPRNRQEELQQSLAASLAALEEERSARQEIKDQLEE 300          
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Match: D7FNZ2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ2_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 3.600e-79
Identity = 144/200 (72.00%), Postives = 157/200 (78.50%), Query Frame = 1
Query:   10 SRLMPSSIYDLLETRRVVLELSEVLDLASDICGGLAYLHGLSPSIVHRDLSSRNILYDGHTAKLADLGQAKAMGLAAAGSGSRQTAMPGAMVYAAPEVLTGRYTTSIDLFSFGVLLAQLITGEYPRLDKRKEQARTEAGTRFPLLKPLLESCLSLHAEDRPSASETMCTLERFRADPCAYHRAEHGAGILADRWFQAEQK 609
            + LMPSS+YDLLETR V LE  EVLDLASDI  GL Y+HG SP+IVHRDLSSRN+LYDG TAKLADLGQAKAMG+A+A  GSRQTAMPGAM               ID+FSFGVLLAQLITGEYPRLD RKEQ   EAG RF LLKPLL+ CLSLHAEDRP+A+E +  LE  RADPCAYH A HGAGILADRWFQ  +K
Sbjct:   32 TELMPSSVYDLLETRGVRLEQHEVLDLASDIASGLVYIHGQSPAIVHRDLSSRNVLYDGRTAKLADLGQAKAMGVASAVGGSRQTAMPGAM---------------IDVFSFGVLLAQLITGEYPRLDTRKEQV-AEAGDRFSLLKPLLDRCLSLHAEDRPAAAEALRALEALRADPCAYHPAGHGAGILADRWFQEGEK 215          
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Match: A0A482SFG2_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFG2_9ARCH)

HSP 1 Score: 172 bits (436), Expect = 6.510e-47
Identity = 101/241 (41.91%), Postives = 147/241 (61.00%), Query Frame = 1
Query:    4 LTSRLMPSSIYDLLETRRVVLELSEVLDLASDICGGLAYLHGLSPSIVHRDLSSRNILYDGHTAKLADLGQAKAMGLAAAGSGSRQTAMPGAMVYAAPEVLTGRYTTSIDLFSFGVLLAQLITGEYPRLDKRKEQARTEAGTRFPLLKPLLESCLSLHAEDRPSASETMCTLERFRADPCAYHRA-----EHGAGILADRWFQAEQKERCKALEARLYLHERRLSAEIGRWKEEADRVDNL 711
            + + L+P S+YD++E +++   L ++LD + DI  GL YLH   PSIVHRD+S++NIL  G  AK+ADLGQAK   L +  + SRQT MPGAM Y+APEVLTG+Y+  ID+FSFG+LL+Q+ T  YPR+D+R+EQ +T   T  P+LK ++   +S    +RPSA E + +L+    +   Y  +     E        ++ Q+    +   L  +L   ++ L AE  RWK EA  VD L
Sbjct:   88 IVTELLPCSMYDVVEVKKIKFSLPDILDYSLDIAHGLNYLHSHDPSIVHRDISAKNILVAGTRAKIADLGQAK---LFSTNTLSRQTGMPGAMAYSAPEVLTGKYSAKIDIFSFGILLSQMCTNLYPRVDRREEQIQTAIDT-HPILKDIIAKSMSYDPAERPSAPELILSLQLIHDNDRYYPISRRSLPERELSAEVAQYVQSRSSSQISELSLKLEQTQKHLHAEEARWKTEAAAVDTL 324          
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Match: A0A7S1XXV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXV7_9STRA)

HSP 1 Score: 172 bits (435), Expect = 8.740e-45
Identity = 112/278 (40.29%), Postives = 159/278 (57.19%), Query Frame = 1
Query:    4 LTSRLMPSSIYDLLETRR---VVLELSEVLDLASDICGGLAYLHGLSPSIVHRDLSSRNILYDGHTAKLADLGQAKAMGLAA----AGSG--------------------SRQTAMPGAMVYAAPEVLTGRYTTSIDLFSFGVLLAQLITGEYPRLDKRKEQARTEAGTRFPLLKPLLESCLSLHAEDRPSASETMCTLERFRADPCAYHRAEHG-------AGILADRWFQAEQKERCKALEARLYLHERRLSAEIGRWKEEADRVDNLSTRIEATK 735
            + + LMP S+YD+L   +   V L+ +EVL++AS +  GL Y+H LSP I+HRD+S++N+L DGH   ++DLGQAK  G  +    +GSG                    S+QTAMPGA+ YAAPEVLTG+YT+ ID+FS  VL+ Q  T +YPR+++R+ Q    A  RF  L+ LL SCL L  E RP A+     L   + D   ++   HG       +GIL  RW +   +E+   + A      RRL+AE GRW++EAD+ D    R + T+
Sbjct:  206 IVTELMPCSLYDVLHKAQGTGVHLKSTEVLNIASGVAAGLRYMHELSPPIIHRDISAKNVLIDGHRVCISDLGQAKIFGRPSLYLYSGSGEPPXXXXXXGANSHGNSQSMSKQTAMPGALAYAAPEVLTGKYTSKIDIFSTAVLMVQCCTSDYPRIEQRERQVHA-AIRRFSALEELLTSCLHLQPEMRPDAATLCDKLGELKRDG-RWYEGYHGHGKVMAQSGILQTRWMEDVIEEKVGQIRAEHASIARRLAAEEGRWQQEADKRDAAEEREKETR 481          
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Match: A0A7S1CLV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLV4_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.730e-43
Identity = 92/199 (46.23%), Postives = 130/199 (65.33%), Query Frame = 1
Query:    4 LTSRLMPSSIYDLLETRRVVLELSEVLDLASDICGGLAYLHGLSPSIVHRDLSSRNILYDGHTAKLADLGQAKAMGLAAAGSGSRQTAMPGAMVYAAPEVLTGRYTTSIDLFSFGVLLAQLITGEYPRLDKRKEQARTEAGTRFPLLKPLLESCLSLHAEDRPSASETMCTLERFR-ADPCAYHRAEHGAGILADRWFQ 597
            + + LM  S+Y+LL  +++++  +E++D +  I  GL YLH   P ++HRD+SS+N+L  G   K++DLGQAK +    AG+ SR TA PGA+VYAAPEVLTG YT +ID+FSFGVLL Q++TGE+P ++KR+EQ R  A  RFP L  L+  CL +    R +AS  +  LE  R     A    EH  GI+A+R F+
Sbjct:   16 IVTELMQHSVYNLLHEQKIMMSFAEIVDTSMAIARGLVYLHTHEPPVIHRDISSKNVLISGPVVKISDLGQAKVL----AGTSSRNTAAPGAIVYAAPEVLTGSYTAAIDMFSFGVLLMQMVTGEFPNIEKRREQ-REAASRRFPQLGDLISRCLHMDPGRRYTASMVVRALESLRRVSEYADSAHEHDGGIMAERAFR 209          
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Match: UPI0009E21375 (dual specificity protein kinase shkC-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E21375)

HSP 1 Score: 89.4 bits (220), Expect = 8.560e-18
Identity = 62/175 (35.43%), Postives = 89/175 (50.86%), Query Frame = 1
Query:   10 SRLMPSSIYDLLETRRVVLELSEVLDLASDICGGLAYLHGLSPSIVHRDLSSRNILY----DGHTAKLADLGQAKAMGLAAAGSGSRQTAMPGAMVYAAPEVLTGRYTTSIDLFSFGVLLAQLITGEYPRLDKRKEQARTEAGTRFPLLKPLLESCLSLHAEDRPSASETMCTLE 522
            + LM SS+  LLE R +V   +EV  ++ D+   L YLH   P I+HRD+SS N+L     D    K++D G A  +           T  PGAM+Y APE LT   T  +D++SFGVLL ++   E P  ++R +Q          LL+ L+  C+      RP+  E +  LE
Sbjct:   39 TELMESSLRALLEQRPLVT--TEVSTISLDVARALNYLHQKKPPIIHRDISSANVLLWRKGDQRRGKVSDYGTANFVQ-------HTMTVGPGAMIYMAPEALTSNQTVKVDVYSFGVLLCEMCIRELPDPERRNQQIAMVTSC---LLRALIRRCVQREPAARPNMEEIIEELE 201          
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Match: A0A5J9UUI0_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UUI0_9POAL)

HSP 1 Score: 89.7 bits (221), Expect = 1.680e-16
Identity = 65/180 (36.11%), Postives = 92/180 (51.11%), Query Frame = 1
Query:   28 SIYDLLETRRVVLELSEVLDLASDICGGLAYLHGLSPSIVHRDLSSRNILYD-GHTAKLADLGQAKAMGLAAAGSGSRQTAMPGAMVYAAPEVLTGR-YTTSIDLFSFGVLLAQLITGEYPRLDKRKEQAR--TEAGTR-------FPLLKPLLESCLSLHAEDRPSASETMCTLERFRA 534
            S++D L  +  +L+L  VL  A DIC G++YLH     I+HRDL S N+L D  +  K+AD G A+         G   TA  G   + APEVLT + Y    D++SFG++L +L+T + P  D    QA      G R        P ++ L+E C      DRPS S+ +  LE  +A
Sbjct:  341 SLFDFLHNKHNILQLPAVLKFALDICRGMSYLH--QKDIIHRDLKSANLLIDKDYVVKVADFGLARLQD-----QGGAMTAETGTYRWMAPEVLTHQPYDNKADVYSFGLVLWELMTSKIPYTDMNPVQAAMGVAKGLRPQIPENAHPRMRNLMERCWEAIPSDRPSFSDIIAELEDIQA 513          
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Match: A0A7S3D882_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D882_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 2.460e-16
Identity = 69/189 (36.51%), Postives = 99/189 (52.38%), Query Frame = 1
Query:    4 LTSRLMPSSIYDLLETRRVVLELSEVLDLASDICGGLAYLHGLSPSIVHRDLSSRNILYDGH-TAKLADLGQAKAMGLAAAGSGSRQTAMPGAMVYAAPEVLTG-RYTTSIDLFSFGVLLAQLITGE--YPRLDKRK-------EQARTEAGTRFPL-LKPLLESCLSLHAEDRPSASETMCTLERFRA 534
            +T  L   S+ +LL  ++V   L   L LA +I  G  YLH L P I+HRDL S NIL D H  AK+AD G +K    A+  SG+  T  PG   + APE+    +Y  S+D +SFG++L +++TGE  YP L+  +       +  R +     P+ LK L++SC       RP     + TL +F A
Sbjct:  213 ITELLTRGSLSELLYKKKVKFGLGLALRLAKNIAEGCHYLHSLRPIIIHRDLKSSNILVDEHWNAKIADFGLSKFKSDASHTSGALGT--PG---WTAPEIYRNEKYDESVDAYSFGIILKEIMTGERPYPNLNAMQIAFATVYKGVRPDVPDSLPVFLKNLMKSCWDTDPSRRPKFKRILQTLSKFEA 396          
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Match: A0A7S3D888_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D888_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 3.090e-16
Identity = 69/189 (36.51%), Postives = 99/189 (52.38%), Query Frame = 1
Query:    4 LTSRLMPSSIYDLLETRRVVLELSEVLDLASDICGGLAYLHGLSPSIVHRDLSSRNILYDGH-TAKLADLGQAKAMGLAAAGSGSRQTAMPGAMVYAAPEVLTG-RYTTSIDLFSFGVLLAQLITGE--YPRLDKRK-------EQARTEAGTRFPL-LKPLLESCLSLHAEDRPSASETMCTLERFRA 534
            +T  L   S+ +LL  ++V   L   L LA +I  G  YLH L P I+HRDL S NIL D H  AK+AD G +K    A+  SG+  T  PG   + APE+    +Y  S+D +SFG++L +++TGE  YP L+  +       +  R +     P+ LK L++SC       RP     + TL +F A
Sbjct:  770 ITELLTRGSLSELLYKKKVKFGLGLALRLAKNIAEGCHYLHSLRPIIIHRDLKSSNILVDEHWNAKIADFGLSKFKSDASHTSGALGT--PG---WTAPEIYRNEKYDESVDAYSFGIILKEIMTGERPYPNLNAMQIAFATVYKGVRPDVPDSLPVFLKNLMKSCWDTDPSRRPKFKRILQTLSKFEA 953          
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Match: M4BA17_HYAAE (Protein kinase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BA17_HYAAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.290e-16
Identity = 63/177 (35.59%), Postives = 91/177 (51.41%), Query Frame = 1
Query:   82 LDLASDICGGLAYLHGLSPSIVHRDLSSRNILY-DGHTAKLADLGQAKAMGLAAA--GSGSRQTAMPGAMVYAAPEVLTGR-YTTSIDLFSFGVLLAQLITGEYP----------------RLDKRKEQARTEAGTRFPL--------LKPLLESCLSLHAEDRPSASETMCTLERF 528
            L +A  I  GLAY+H LSP ++HRDL S+N+L  D + AKL+D G ++   +  A  G G   T   G   + APEVL G+ Y    D+FSFGV+L++L T +YP                R+ ++K   +   G+  P         +  L  SCL    E+RPSASE + T++  
Sbjct:  194 LTIALHIAEGLAYMHSLSPKVIHRDLKSKNVLLNDAYEAKLSDFGVSRERQVVGAKGGLGKFMTPGVGTSFWIAPEVLLGKDYDEHADIFSFGVVLSELDTDDYPYWNSGTIPGHGIPDERRVQEQKILEKVALGSLRPTFYNDCPAGVLSLAASCLEGRPENRPSASEVVLTIKEL 370          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54390.12813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J677_9PHAE2.470e-8753.95Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FNZ2_ECTSI3.600e-7972.00Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A482SFG2_9ARCH6.510e-4741.91Protein kinase domain-containing protein n=1 Tax=a... [more]
A0A7S1XXV7_9STRA8.740e-4540.29Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1CLV4_9STRA2.730e-4346.23Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI0009E213758.560e-1835.43dual specificity protein kinase shkC-like n=1 Tax=... [more]
A0A5J9UUI0_9POAL1.680e-1636.11Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]
A0A7S3D882_9EUKA2.460e-1636.51Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3D888_9EUKA3.090e-1636.51Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
M4BA17_HYAAE6.290e-1635.59Protein kinase domain-containing protein n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54390contigH-elongata_contig54390:144..3060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score267.3
Seed ortholog evalue8e-69
Seed eggNOG ortholog2880.D7FNZ2
Preferred nameANKRD44
KEGG rclassRC00453
KEGG koko:K01597,ko:K15503,ko:K20129
KEGG ReactionR01121
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00095
GOsGO:0000902,GO:0000904,GO:0002064,GO:0003382,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006810,GO:0006897,GO:0007275,GO:0008150,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0016043,GO:0016192,GO:0030154,GO:0030855,GO:0032501,GO:0032502,GO:0032989,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048468,GO:0048598,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0060429,GO:0071840,GO:0098657
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionArmadillo-like protein kinase
Ec32 orthologEc-10_004900.1
EC4.1.1.33
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons7
Model size858
Cds size840
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54390.12813.1prot_H-elongata_contig54390.12813.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54390 162..3060 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.78132-UTR-H-elongata_contig54390:143..1611622930885.78132-UTR-H-elongata_contig54390:143..161Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54390 144..161 +
1691679611.6260238-UTR-H-elongata_contig54390:143..1611691679611.6260238-UTR-H-elongata_contig54390:143..161Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54390 144..161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.7998781-CDS-H-elongata_contig54390:161..2771622930885.7998781-CDS-H-elongata_contig54390:161..277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 162..277 +
1691679611.6395528-CDS-H-elongata_contig54390:161..2771691679611.6395528-CDS-H-elongata_contig54390:161..277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 162..277 +
1622930885.8190095-CDS-H-elongata_contig54390:612..7601622930885.8190095-CDS-H-elongata_contig54390:612..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 613..760 +
1691679611.648716-CDS-H-elongata_contig54390:612..7601691679611.648716-CDS-H-elongata_contig54390:612..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 613..760 +
1622930885.8392444-CDS-H-elongata_contig54390:977..10221622930885.8392444-CDS-H-elongata_contig54390:977..1022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 978..1022 +
1691679611.657396-CDS-H-elongata_contig54390:977..10221691679611.657396-CDS-H-elongata_contig54390:977..1022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 978..1022 +
1622930885.858574-CDS-H-elongata_contig54390:1368..14601622930885.858574-CDS-H-elongata_contig54390:1368..1460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 1369..1460 +
1691679611.6676064-CDS-H-elongata_contig54390:1368..14601691679611.6676064-CDS-H-elongata_contig54390:1368..1460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 1369..1460 +
1622930885.8774104-CDS-H-elongata_contig54390:1689..18671622930885.8774104-CDS-H-elongata_contig54390:1689..1867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 1690..1867 +
1691679611.6789587-CDS-H-elongata_contig54390:1689..18671691679611.6789587-CDS-H-elongata_contig54390:1689..1867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 1690..1867 +
1622930885.8944008-CDS-H-elongata_contig54390:2348..25121622930885.8944008-CDS-H-elongata_contig54390:2348..2512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 2349..2512 +
1691679611.6887052-CDS-H-elongata_contig54390:2348..25121691679611.6887052-CDS-H-elongata_contig54390:2348..2512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 2349..2512 +
1622930885.9097178-CDS-H-elongata_contig54390:2963..30601622930885.9097178-CDS-H-elongata_contig54390:2963..3060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 2964..3060 +
1691679611.7004516-CDS-H-elongata_contig54390:2963..30601691679611.7004516-CDS-H-elongata_contig54390:2963..3060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54390 2964..3060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54390.12813.1

>prot_H-elongata_contig54390.12813.1 ID=prot_H-elongata_contig54390.12813.1|Name=mRNA_H-elongata_contig54390.12813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
MPSSIYDLLETRRVVLELSEVLDLASDICGGLAYLHGLSPSIVHRDLSSR
NILYDGHTAKLADLGQAKAMGLAAAGSGSRQTAMPGAMVYAAPEVLTGRY
TTSIDLFSFGVLLAQLITGEYPRLDKRKEQARTEAGTRFPLLKPLLESCL
SLHAEDRPSASETMCTLERFRADPCAYHRAEHGAGILADRWFQAEQKERC
KALEARLYLHERRLSAEIGRWKEEADRVDNLSTRIEATKRERDDVLKSRG
EELEESIAGVLSVLDKERSEHGAIRRELEE
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mRNA from alignment at H-elongata_contig54390:144..3060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54390.12813.1 ID=mRNA_H-elongata_contig54390.12813.1|Name=mRNA_H-elongata_contig54390.12813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2917bp|location=Sequence derived from alignment at H-elongata_contig54390:144..3060+ (Himanthalia elongata Himel1 dioecious)
ACTCTCACTTCCAGGCTGATGCCATCTAGTATCTACGATCTCCTCGAAAC GCGGAGAGTGGTTTTGGAGCTATCTGAAGTACTAGACCTGGCTAGTGATA TCTGCGGTGGCCTAGCATACCTGCACGGGCTCAGGTAAAGTATACCAATA CCGAAGTAAGAGGTTCGCCAAGTTCCATATGCCGCTCGGAAATGATAAAC TTTTGTGCCGATTGCGAACGTTTTGGAAAGCCACGTCGAACGCTAATACT CCTCTTTTCGGGAGGTAATGAACGCACCGGGGGGTTAGCGCTGCTGTGAT GTGGAGCTCCTCTCAAAGGATTAAGGCCGATGAGAATCATATTGGGGATG GATGCATTTTTAGGGCGATTCACGTAGTGGCTTTTCGACAGACCTATCAT GTGCAGTAAATATACACCCACTCTCAATCCCTGTTGATGCTCGTGCGTGC TACCCGATTGACTCTTTAGTCCGTCTATCGTTCATCGCGACCTCTCCTCG AGAAATATTCTCTACGACGGACACACAGCTAAGCTAGCGGACTTGGGGCA GGCCAAGGCTATGGGCTTGGCAGCAGCAGGATCGGGGAGTCGCCAAACAG CCATGCCGGGAGCGATGGTACGCTTGAAACAATGAATAAATGTTTTCTAT GTCGACCACCAACACACAGTTTTGCCGAACTCACCATACAAACTCTTGAC AGTGGTGAAAGTATTTTCGTACATCAGGTAAGACCTTCAACATTAAACTT TTTGCGCAATCTACGAGGCCGATGTCACTACCCTTCAAAGGGCCAATTTC CGCACTGAGCCAGGATATCTCACTGCGACCATAGGTTTACGCTGCTCCGG AAGTACTCACTGGGCGCTACACGACCAGCGTGAGTTTCCTCAGTTCAACC ACAAGTAAAACACGCTTTAGTAGGTGTAAACCAATATATTGATCTCGTGC ACCCTAACCCCATTGTACCACAATAGCACGGTGTACAACCAGGACCTATC GTAACTGTGCTTGAACGTTTATCACCTCTATACCCGAGCTCAATTCCGTC TCAGATGAGTAAATGTTACGCACAAGCAAAGGTGCTGAATGCAGCAGGTC GTTCTGTTTTCAGTGACTTGTGGGTTTACCGTACGAAGTTATTTTTTTCT GACTTGCGTCGTCGCGAGTTTTGTGTAGTATCTGCTTCTCTACACCGATG TAGTCTAAATATGCACGCATCGTAGATCGATCTCTTCAGCTTCGGAGTTC TTCTGGCCCAGCTCATCACCGGAGAGTACCCTAGACTCGACAAGAGAAAG GAACAGGCGAGAACCGAGTGATTTTCAGAACTTACTTAAGGGATCGTAAA AACCACCTTGACAAGCTTGTTCTCTTGGTTATGCCACAGTCGGCACCTAA TACGAGTTTTTGTTTGTTTGTTTACATCACAGGCGTAGTTAGCTAGGCCA ATACCAATCATGTGCACCATTCACCACGGTCGAAGCCAAACTAAACTCCA GATTCCAAATGAAGTATATATTGTCTCACGCAAAGCAGGTGGAGAGGGCG GGGACTAGATTTCCCTTGCTGAAACCATTGCTCGAGAGCTGTCTCAGTCT ACACGCCGAGGATCGACCCTCCGCATCTGAAACGATGTGTACTTTAGAGA GGTTTCGAGCAGACCCATGTGCGTACCACCGGGCGGAACACGGAGCCGGT ATCCTCGCAGATCGATGGTTCCAGGTATTCATTAAGGATTCGATGCTTCC GTTTTGATGGCAGCAACGAGAAGGTTGTGGGGCACATTTTATCTGTATTG AGTGTAGAAAATACTGTACGCACCTGCTTAAGGTTCAACGGAGGAGGGCG AGTCACTATCCCAGGGGACTCATTCGTGCAATGACTGGTGGTATGGCGTA GGGCTTTGAAGGGTTGTTACTGTCGATGTGTAACACGAACATTTGTTCGT AGCAATATGTAGGGTCGTGCGGTGTATGTGGGATTTTAATCCAGCTGCAC AATGCGAGATGCGCAGCGCGCACGGCACGTTCGACCCGGTCGAACCGCTT AGTTGAGCCTTTGGTTCTCTCTCGCGCGAATTCAGGTCGTAGAGTCATGC GAAGGTGTGTTTCCAGCAACTTGGCACTCATCCCACATTCAATTTTTTTA CGCTTGTTTTTTTTTAATGGTAACCCGGAGGCATCCGCTGGTGCGTTGCT CACAGGCAGAGCAAAAGGAGCGATGCAAAGCGCTTGAGGCCCGTTTATAT TTGCACGAGCGGAGACTGTCGGCCGAGATTGGTCGATGGAAGGAAGAGGC AGACAGGGTGGACAACCTGTCGACGAGGATAGAGGCGACCAAGAGAGAAC GAGACGACGTGTTGAAGAGGTGCGTTACGCGTTCTTTGCCTATGATGGGT TATCACACCCTAACCTCAAGAGGCGATAACCCAATTACGCCTATTTGTTT GTTTTTAATCCGCCTCAAAGGCGGTAAACTGGGCCTACCGGTAGGAGGTA GGGAAGACAATGTTTCAGAGGGTGACCGAGTTTTCGTTGTCGTTGTTGTT GGTTAACACATCCAGCGTGCTGTCTTTGCAGTTGCAAAACAGCAACCGCT CAACCCAATCAGCCTCATTCATTTTAACTACAAACCCCGCTTATAGTCTC TAAGAGCCACCGAGGTCAGCATGTCATATTTTGGAGAAAGCTCGCTAGGC GATCCATCCTGGATCCGCACTCGCGACAAAATCCTCGTCGCGTTCCAATT ATCCTAAACCAGCTATATTCCCACCAGCATTCACGATTATATTTCTGAAT TTGCACTGCGTTGAATTGAGCAGAGGCGAGGAGCTCGAAGAAAGTATAGC GGGCGTGCTTTCAGTCTTGGATAAGGAGAGGAGCGAACACGGTGCTATCA GGAGGGAGCTCGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig54390:144..3060+

>mRNA_H-elongata_contig54390.12813.1 ID=mRNA_H-elongata_contig54390.12813.1|Name=mRNA_H-elongata_contig54390.12813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at H-elongata_contig54390:144..3060+ (Himanthalia elongata Himel1 dioecious)
ATGCCATCTAGTATCTACGATCTCCTCGAAACGCGGAGAGTGGTTTTGGA
GCTATCTGAAGTACTAGACCTGGCTAGTGATATCTGCGGTGGCCTAGCAT
ACCTGCACGGGCTCAGATGCCATCTAGTATCTACGATCTCCTCGAAACGC
GGAGAGTGGTTTTGGAGCTATCTGAAGTACTAGACCTGGCTAGTGATATC
TGCGGTGGCCTAGCATACCTGCACGGGCTCAGTCCGTCTATCGTTCATCG
CGACCTCTCCTCGAGAAATATTCTCTACGACGGACACACAGCTAAGCTAG
CGGACTTGGGGCAGGCCAAGGCTATGGGCTTGGCAGCAGCAGGATCGGGG
AGTCGCCAAACAGCCATGCCGGGAGCGATGTCCGTCTATCGTTCATCGCG
ACCTCTCCTCGAGAAATATTCTCTACGACGGACACACAGCTAAGCTAGCG
GACTTGGGGCAGGCCAAGGCTATGGGCTTGGCAGCAGCAGGATCGGGGAG
TCGCCAAACAGCCATGCCGGGAGCGATGGTTTACGCTGCTCCGGAAGTAC
TCACTGGGCGCTACACGACCAGCGTTTACGCTGCTCCGGAAGTACTCACT
GGGCGCTACACGACCAGCATCGATCTCTTCAGCTTCGGAGTTCTTCTGGC
CCAGCTCATCACCGGAGAGTACCCTAGACTCGACAAGAGAAAGGAACAGG
CGAGAACCGAATCGATCTCTTCAGCTTCGGAGTTCTTCTGGCCCAGCTCA
TCACCGGAGAGTACCCTAGACTCGACAAGAGAAAGGAACAGGCGAGAACC
GAGGCGGGGACTAGATTTCCCTTGCTGAAACCATTGCTCGAGAGCTGTCT
CAGTCTACACGCCGAGGATCGACCCTCCGCATCTGAAACGATGTGTACTT
TAGAGAGGTTTCGAGCAGACCCATGTGCGTACCACCGGGCGGAACACGGA
GCCGGTATCCTCGCAGATCGATGGTTCCAGGGCGGGGACTAGATTTCCCT
TGCTGAAACCATTGCTCGAGAGCTGTCTCAGTCTACACGCCGAGGATCGA
CCCTCCGCATCTGAAACGATGTGTACTTTAGAGAGGTTTCGAGCAGACCC
ATGTGCGTACCACCGGGCGGAACACGGAGCCGGTATCCTCGCAGATCGAT
GGTTCCAGGCAGAGCAAAAGGAGCGATGCAAAGCGCTTGAGGCCCGTTTA
TATTTGCACGAGCGGAGACTGTCGGCCGAGATTGGTCGATGGAAGGAAGA
GGCAGACAGGGTGGACAACCTGTCGACGAGGATAGAGGCGACCAAGAGAG
AACGAGACGACGTGTTGAAGAGGCAGAGCAAAAGGAGCGATGCAAAGCGC
TTGAGGCCCGTTTATATTTGCACGAGCGGAGACTGTCGGCCGAGATTGGT
CGATGGAAGGAAGAGGCAGACAGGGTGGACAACCTGTCGACGAGGATAGA
GGCGACCAAGAGAGAACGAGACGACGTGTTGAAGAGCAGAGGCGAGGAGC
TCGAAGAAAGTATAGCGGGCGTGCTTTCAGTCTTGGATAAGGAGAGGAGC
GAACACGGTGCTATCAGGAGGGAGCTCGAGGAGCAGAGGCGAGGAGCTCG
AAGAAAGTATAGCGGGCGTGCTTTCAGTCTTGGATAAGGAGAGGAGCGAA
CACGGTGCTATCAGGAGGGAGCTCGAGGAG
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