prot_H-elongata_contig54383.12811.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54383.12811.1
Unique Nameprot_H-elongata_contig54383.12811.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length70
Homology
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: D7FQB6_ECTSI (Ribosomal_S17_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB6_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.070e-39
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0
Query:    1 MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 69
            MRFVKNVGLGFKTPK A+EGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLH+VSKYRR
Sbjct:   62 MRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 130          
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A835Z9X9_9STRA (Ribosomal protein S17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.070e-35
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0
Query:    1 MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 69
            MRF KN+GLGFKTPK A  GTYVDKKCPFTG+VSIRGRILKGLV+SAGKM NT VIRRDYLHYV+KYRR
Sbjct:   35 MRFYKNIGLGFKTPKLAISGTYVDKKCPFTGNVSIRGRILKGLVLSAGKMKNTCVIRRDYLHYVTKYRR 103          
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A7S2XWS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWS0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.400e-33
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 0
Query:    1 MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 69
            MRF KN+GLGFKTPK A EGTYVDKKCPFTG+VSIRGRILKGLVIS  KM NTI++RRDYLHY+SKYRR
Sbjct:   37 MRFYKNIGLGFKTPKLAIEGTYVDKKCPFTGNVSIRGRILKGLVIST-KMKNTIIVRRDYLHYISKYRR 104          
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A7S4UCS4_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UCS4_GUITH)

HSP 1 Score: 117 bits (294), Expect = 1.010e-32
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 69
            MRFVKNVGLG KTP AA E  YVDKKCPFTG+VSIRGRILKG VISAGKM  TI++RRDYLHY+ KYRR
Sbjct:   33 MRFVKNVGLGIKTPDAAIENPYVDKKCPFTGNVSIRGRILKGQVISAGKMKRTIIVRRDYLHYIRKYRR 101          
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A7S4WCA2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WCA2_9DINO)

HSP 1 Score: 116 bits (290), Expect = 1.580e-31
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 0
Query:    1 MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 69
            MR+ KNVGLG KTPK A EGTYVDKKCPFTGDV+IRGRILKGLVIS  KMT TI++RRDYLHY+ KYRR
Sbjct:   37 MRWTKNVGLGIKTPKNAVEGTYVDKKCPFTGDVAIRGRILKGLVIST-KMTRTIIVRRDYLHYIRKYRR 104          
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A812UUF3_SYMMI (RPS11 protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UUF3_SYMMI)

HSP 1 Score: 113 bits (282), Expect = 9.330e-31
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0
Query:    1 MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 69
            MRF K+VGLGFKTPKAA EG+YVDKKCPFTG+VSIRGRILKG+V+S  KM  T+VIRRDYL YV KYRR
Sbjct:    1 MRFYKSVGLGFKTPKAASEGSYVDKKCPFTGNVSIRGRILKGIVVST-KMKRTVVIRRDYLQYVRKYRR 68          
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A7S3PX81_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX81_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.320e-30
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0
Query:    1 MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 69
            MRF ++VGLG KTP AA EGTYVDKKCPFTG+V+IRGRILKGLVIS  KM NT+VIRRDYLHY++KYRR
Sbjct:   40 MRFTRSVGLGIKTPDAAIEGTYVDKKCPFTGNVAIRGRILKGLVIS-NKMKNTVVIRRDYLHYITKYRR 107          
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: Q9U9A0_PHYPO (Putative ribosomal protein S11 (Fragment) n=1 Tax=Physarum polycephalum TaxID=5791 RepID=Q9U9A0_PHYPO)

HSP 1 Score: 112 bits (281), Expect = 3.020e-30
Identity = 49/68 (72.06%), Postives = 62/68 (91.18%), Query Frame = 0
Query:    2 RFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 69
            R+V+ VGLG+KTPKAA EGT+VD KCPFTG+VSIRGRIL+G+V+SAGKM  T+V+RR+YLHY+ KY+R
Sbjct:   35 RYVRQVGLGYKTPKAALEGTFVDDKCPFTGNVSIRGRILRGVVVSAGKMKRTVVVRRNYLHYIQKYKR 102          
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A7S1CXZ0_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXZ0_CYCTE)

HSP 1 Score: 113 bits (282), Expect = 5.930e-30
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 69
            MRF K+VGLG KTP AA EG YVDKKCPFTG+VSIRGRILKGLVIS  KM  TI++RRDYLHY+SKYRR
Sbjct:   70 MRFTKSVGLGIKTPTAALEGNYVDKKCPFTGNVSIRGRILKGLVIST-KMKRTIIVRRDYLHYISKYRR 137          
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A6V2F9D2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2F9D2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.210e-30
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 69
            MRF +NVGLG +TP  A EG YVDKKCPFTG+VSIRGRILKGLVIS  KM NTI++RRDYLHY++KYRR
Sbjct:   43 MRFTRNVGLGIRTPATAIEGNYVDKKCPFTGNVSIRGRILKGLVIST-KMKNTIIVRRDYLHYITKYRR 110          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB6_ECTSI1.070e-3995.65Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
A0A835Z9X9_9STRA7.070e-3585.51Ribosomal protein S17-domain-containing protein n=... [more]
A0A7S2XWS0_9STRA2.400e-3384.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4UCS4_GUITH1.010e-3281.16Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S4WCA2_9DINO1.580e-3181.16Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A812UUF3_SYMMI9.330e-3179.71RPS11 protein n=2 Tax=Symbiodinium microadriaticum... [more]
A0A7S3PX81_9STRA1.320e-3079.71Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
Q9U9A0_PHYPO3.020e-3072.06Putative ribosomal protein S11 (Fragment) n=1 Tax=... [more]
A0A7S1CXZ0_CYCTE5.930e-3079.71Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A6V2F9D2_9STRA8.210e-3076.81Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.1000coord: 1..69
e-value: 9.4E-32
score: 111.8
NoneNo IPR availablePANTHERPTHR10744:SF25coord: 1..69
NoneNo IPR availablePRODOMPD001295coord: 38..69
e-value: 1.0E-5
score: 111.0
IPR03244040S ribosomal protein S11, N-terminalPFAMPF16205Ribosomal_S17_Ncoord: 1..40
e-value: 5.0E-24
score: 84.5
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 1..69
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 36..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54383contigH-elongata_contig54383:279..681 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54383.12811.1mRNA_H-elongata_contig54383.12811.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54383 279..690 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54383.12811.1 ID=prot_H-elongata_contig54383.12811.1|Name=mRNA_H-elongata_contig54383.12811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKM
TNTIVIRRDYLHYVSKYRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032440Ribosomal_S11_N
IPR000266Ribosomal_S17/S11
IPR012340NA-bd_OB-fold