mRNA_H-elongata_contig54372.12810.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54372.12810.1
Unique NamemRNA_H-elongata_contig54372.12810.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54372.12810.1 vs. uniprot
Match: A0A6H5JCH7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH7_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 8.720e-43
Identity = 94/138 (68.12%), Postives = 103/138 (74.64%), Query Frame = 1 
Query:   97 GADCRLRASSWHAADMRSGRSPTFSNGSTTHHHLQVHSSIS----LGSLLPQILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGVIESVSINRDDRTHRGRGFAFVKFFQEVCTEVAV 498
            G D RLR+ SWHA+D  S RSP    G    H  + +        +G    ++LDGSDVLQQISNVTSTEPSNEREVFVGGLRESED+VHITEEELATYF+KFGVIESVSINRDDRT RGRGFAFVKFFQE     AV
Sbjct:  166 GEDSRLRSLSWHASDC-SRRSPPPPPGLEYSHSNRKNDRFFPKRIVGRDDREVLDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDAVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQEAAALNAV 302
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BLAST of mRNA_H-elongata_contig54372.12810.1 vs. uniprot
Match: D7FM19_ECTSI (RNA recognition motif. (A.k.a. RRM, RBD, or RNP domain) containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM19_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 7.400e-42
Identity = 93/166 (56.02%), Postives = 110/166 (66.27%), Query Frame = 1 
Query:    1 PSQPEPQSW---HPLPQTSDEALSDASCSFSRADRGADCRLRASSWHAADMRSGRSPTFSNGSTTHHHLQVHSSISLGSLLP---QILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGVIESVSINRDDRTHRGRGFAFVKFFQEV 480
            P +P+ Q W      P   DE  S ++ +   +  G D RLR+SSWHA                 H++ +         +     ++LDGSDVLQQISN+TSTEPSNEREVFVGGLRESED+VHITEEELATYF+KFGVIESVSINRDDRT RGRGFAFVKFFQE+
Sbjct:  133 PPEPKRQQWKVCEKTPLAGDETASTSAAAAPMS--GEDSRLRSSSWHAXXXXXXXXXXXXGLEYGHNNNKNDRFFPKRIVCRDDREVLDGSDVLQQISNLTSTEPSNEREVFVGGLRESEDAVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQEL 296
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BLAST of mRNA_H-elongata_contig54372.12810.1 vs. uniprot
Match: A0A8C4QJM1_EPTBU (Uncharacterized protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QJM1_EPTBU)

HSP 1 Score: 55.5 bits (132), Expect = 2.220e-6
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  235 PQILDGS--DVLQQI--SNVTSTEPSNER-EVFVGGLRESEDSVHITEEELATYFSKFGVIESVSINRDDRTHRGRGFAFVKF 468
            P I+DG   DV + +       T  SN+   +FVGGL ++       E EL  YFS++G+I+SVSI RD  T R RGFAFV+F
Sbjct:   71 PHIIDGRRVDVQRAVPREETMKTYSSNKMARLFVGGLHQN-----TLENELRNYFSRYGIIDSVSIPRDHMTGRHRGFAFVEF 148
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BLAST of mRNA_H-elongata_contig54372.12810.1 vs. uniprot
Match: A0A817FVK2_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A817FVK2_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 3.970e-5
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:  295 PSNEREVFVGGLRESEDSVHITEEELATYFSKFGVIESVSINRDDRTHRGRGFAFVKF 468
            P +ER++FVG L     S  IT+E+L  YFSKFG+IE V+I  D    R RGFAF+ F
Sbjct:   59 PDDERKLFVGQL-----SSDITKEDLQKYFSKFGLIEDVTIKYDVPGGRARGFAFILF 111
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BLAST of mRNA_H-elongata_contig54372.12810.1 vs. uniprot
Match: A0A7J7L5F8_9MAGN (RRM domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7L5F8_9MAGN)

HSP 1 Score: 50.4 bits (119), Expect = 4.160e-5
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:  250 GSDVLQQISN-VTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGVIESVSINRDDRTHRGRGFAFVKFFQE 477
            G+ ++++I   +T T  S   ++F+  L     S + T+EEL   FS FG I+ VS+ RD RT R +GFAFV F  E
Sbjct:    2 GTAMVRRIKTLITQTHRSFSSQIFISRL-----SFYTTDEELNRLFSPFGQIKQVSLVRDPRTQRPKGFAFVTFAME 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54372.12810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JCH7_9PHAE8.720e-4368.12RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FM19_ECTSI7.400e-4256.02RNA recognition motif. (A.k.a. RRM, RBD, or RNP do... [more]
A0A8C4QJM1_EPTBU2.220e-644.58Uncharacterized protein n=1 Tax=Eptatretus burgeri... [more]
A0A817FVK2_9BILA3.970e-551.72Hypothetical protein n=4 Tax=Rotaria TaxID=231623 ... [more]
A0A7J7L5F8_9MAGN4.160e-540.26RRM domain-containing protein n=1 Tax=Kingdonia un... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54372contigH-elongata_contig54372:129..1513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size498
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54372.12810.1prot_H-elongata_contig54372.12810.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54372 296..1464 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.4729946-UTR-H-elongata_contig54372:128..2951622930885.4729946-UTR-H-elongata_contig54372:128..295Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54372 129..295 -
1691679611.4997313-UTR-H-elongata_contig54372:128..2951691679611.4997313-UTR-H-elongata_contig54372:128..295Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54372 129..295 -
1622930885.5495365-UTR-H-elongata_contig54372:1464..15131622930885.5495365-UTR-H-elongata_contig54372:1464..1513Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54372 1465..1513 -
1691679611.536683-UTR-H-elongata_contig54372:1464..15131691679611.536683-UTR-H-elongata_contig54372:1464..1513Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54372 1465..1513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.491046-CDS-H-elongata_contig54372:295..3141622930885.491046-CDS-H-elongata_contig54372:295..314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54372 296..314 -
1691679611.5083687-CDS-H-elongata_contig54372:295..3141691679611.5083687-CDS-H-elongata_contig54372:295..314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54372 296..314 -
1622930885.5071595-CDS-H-elongata_contig54372:946..10501622930885.5071595-CDS-H-elongata_contig54372:946..1050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54372 947..1050 -
1691679611.5174334-CDS-H-elongata_contig54372:946..10501691679611.5174334-CDS-H-elongata_contig54372:946..1050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54372 947..1050 -
1622930885.5266707-CDS-H-elongata_contig54372:1305..14641622930885.5266707-CDS-H-elongata_contig54372:1305..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54372 1306..1464 -
1691679611.527055-CDS-H-elongata_contig54372:1305..14641691679611.527055-CDS-H-elongata_contig54372:1305..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54372 1306..1464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54372.12810.1

>prot_H-elongata_contig54372.12810.1 ID=prot_H-elongata_contig54372.12810.1|Name=mRNA_H-elongata_contig54372.12810.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MKPYRMQAAPFRGQIEALIVVSERHRGTPRTCAVGGPLPSRMGQQRTTIF
RSIPPFRLALSCPRYLTGPTFSSKYLTSPARSQVMSVRFSSGA*
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mRNA from alignment at H-elongata_contig54372:129..1513-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54372.12810.1 ID=mRNA_H-elongata_contig54372.12810.1|Name=mRNA_H-elongata_contig54372.12810.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1385bp|location=Sequence derived from alignment at H-elongata_contig54372:129..1513- (Himanthalia elongata Himel1 dioecious)
CCTTCACAGCCAGAACCACAATCGTGGCATCCGCTCCCCCAAACTAGTGA
TGAAGCCTTATCGGATGCAAGCTGCTCCTTTTCGAGGGCAGATCGAGGCG
CTGATTGTCGTCTCAGAGCGTCATCGTGGCACGCCGCGGACATGCGCAGT
GGGAGGTCCCCTACCTTCTCGAATGGGTCAACAACGCACCACCATCTTCA
GGTCCATTGTTTTTCTCCGAGAAGCACAAAGCGTGAATCCAGGCCTTCAA
GCGAGGAGGATAAGCCATCAAACGAGGTGAGTAGCCGTGGTAATCGCCAC
GGTTTAAAATGCCGGGAGGTACCGTGCGCATCGTTATTGCGCTCCAAAAC
TATACGCGAAACCTAGAAGAGCTTCCTTGAGTGGTTTTTAATCCGACGAT
GTGATACACCGGTAGAAATGACCTCGCCAACCTCGGCATGATAATCTAGT
CCAAACCTGGCAGCCTCCATTTCGCTTGGCTCTCTCCTGCCCCAGATACT
TGACGGGTCCGACGTTCTCCAGCAAATATCTAACGTCACCAGCACGGAGC
CAAGTAATGAGCGTGAGGTAAGGCTGGCCTCTGATCGGCAACTTTACAGA
CGCAATGTATTTTCCAATATTTATTAATCGAACTAAGGATCTGTATGCGT
GCTGGTCCCTGAGAAAGGTTCCTATAGAGTATAGAGTATAGAGCATAGAG
TTCACAGTACCCCATAAATAGAAATTGCCCGCCTTAAGTTTAGAAGCGCG
GTTTGGACGAATTATAGCGAAATGCTTAGGAGTTCAGCATGCCTCTTGAC
CACTGGCGTTAGCCCTGTGCGCGTCGGTTGGAGTATTTTTTCCACCTTTA
GCGAGCGGTGGTAGATTGTTTGTGGTCCAGTCGGCACACCTGGCACCTGG
CTTCGGTTCCTGCATCTTCGGCTGAAATGGCGGTTCCTCTTTTCCCAAAC
AGGAAGACAATTCGCGAGCTTTTTGGAACTGCAGACGAAATTCCCGCTGG
TCCCTTATACCGAAGTATATATTTTAAATAACCAGGCGGCGCCCATATCT
CTACAGTAAAAGAAGACTCTCCTCCAACTGAACCCCTCCCAACAATTGCT
TCTCTCCTTCGAACCCCTCCGTCTTCTCGGTCCTAATGTCCCATGGAACG
ACGTGTTCCTTCCCTTTTGTGGCGGACCAAAAACCCCCACCTAAAACAGG
TTTTCGTCGGGGGCTTGAGGGAAAGCGAGGACTCTGTCCACATCACGGAA
GAGGAACTCGCGACGTACTTCTCCAAGTTTGGCGTTATCGAGAGCGTATC
GATCAATCGCGATGACCGCACGCACCGTGGCCGCGGTTTCGCCTTCGTCA
AGTTCTTCCAAGAGGTGTGTACAGAAGTGGCGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig54372:129..1513-

>mRNA_H-elongata_contig54372.12810.1 ID=mRNA_H-elongata_contig54372.12810.1|Name=mRNA_H-elongata_contig54372.12810.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig54372:129..1513- (Himanthalia elongata Himel1 dioecious)
ATGAAGCCTTATCGGATGCAAGCTGCTCCTTTTCGAGGGCAGATCGAGGC
GCTGATTGTCGTCTCAGAGCGTCATCGTGGCACGCCGCGGACATGCGCAG
TGGGAGGTCCCCTACCTTCTCGAATGGGTCAACAACGCACCACCATCTTC
AGGTCCATTATGAAGCCTTATCGGATGCAAGCTGCTCCTTTTCGAGGGCA
GATCGAGGCGCTGATTGTCGTCTCAGAGCGTCATCGTGGCACGCCGCGGA
CATGCGCAGTGGGAGGTCCCCTACCTTCTCGAATGGGTCAACAACGCACC
ACCATCTTCAGGTCCATTCCTCCATTTCGCTTGGCTCTCTCCTGCCCCAG
ATACTTGACGGGTCCGACGTTCTCCAGCAAATATCTAACGTCACCAGCAC
GGAGCCAAGTAATGAGCGTGAGCCTCCATTTCGCTTGGCTCTCTCCTGCC
CCAGATACTTGACGGGTCCGACGTTCTCCAGCAAATATCTAACGTCACCA
GCACGGAGCCAAGTAATGAGCGTGAGGTTTTCGTCGGGGGCTTGAGTTTT
CGTCGGGGGCTTGA
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