prot_H-elongata_contig54298.12801.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig54298.12801.1
Unique Name	prot_H-elongata_contig54298.12801.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	127

Homology

[Close]

BLAST of mRNA_H-elongata_contig54298.12801.1 vs. uniprot
Match: D7G066_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G066_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 4.700e-62
Identity = 95/125 (76.00%), Postives = 103/125 (82.40%), Query Frame = 0

Query:    1 SSRKSSRKKQKNIVWSQFRKACDRCTDKKVRCDGSNPNGGFKSCTSCHRVGKPCVFGICRRSGPRDINGHKTIAVGVIMKRGKFEKVTHRSGKCRTEECRFANSDGSFRREHYHCRVGDCVFTGK 125
            S R S RKK KN+VWSQFRKACDRCTDKKVRCDGSNP GGFK+CT C R G+ C+FGICRRSGPRD +GHKT A GVIMKR  FEKVT R G+CRT+ CRF N DGSF REH+HCRVGDC F GK
Sbjct:  503 SGRPSPRKKSKNLVWSQFRKACDRCTDKKVRCDGSNPTGGFKACTPCKRAGEACIFGICRRSGPRDEHGHKTAAAGVIMKRNDFEKVTERLGQCRTKTCRFVNKDGSFWREHFHCRVGDCSFAGK 627

[Close]

BLAST of mRNA_H-elongata_contig54298.12801.1 vs. uniprot
Match: A0A6H5JPG2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPG2_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 7.990e-61
Identity = 95/125 (76.00%), Postives = 103/125 (82.40%), Query Frame = 0

Query:    1 SSRKSSRKKQKNIVWSQFRKACDRCTDKKVRCDGSNPNGGFKSCTSCHRVGKPCVFGICRRSGPRDINGHKTIAVGVIMKRGKFEKVTHRSGKCRTEECRFANSDGSFRREHYHCRVGDCVFTGK 125
            S R S RKK KN+VWSQFRKACDRCTDKKVRCDGSNP GGFK+CT C R G+ C+FGICRRSGPRD +GHKT A GVIMKR  FEKVT R G+CRT+ CRF N DGSF REH+HCRVGDC F GK
Sbjct:  752 SGRPSPRKKSKNLVWSQFRKACDRCTDKKVRCDGSNPTGGFKACTPCKRAGEACLFGICRRSGPRDAHGHKTAAAGVIMKRNDFEKVTERLGQCRTKTCRFVNKDGSFWREHFHCRVGDCSFAGK 876

[Close]

BLAST of mRNA_H-elongata_contig54298.12801.1 vs. uniprot
Match: D7FXA4_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA4_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.010e-40
Identity = 70/124 (56.45%), Postives = 81/124 (65.32%), Query Frame = 0

Query:    3 RKSSRKKQKNIVWSQFRKACDRCTDKKVRCDGSNPNGGFKSCTSCHRVGKPCVFGICRRSGPRDINGHKTIAVGVIMKRGKFEKVTHRSGKCR-TEECRFANSDGSFRREHYHCRVGDCVFTGK 125
            R+ SRKK K  VWSQ RKACDRCT KKVRCDG       + C  C RVG  C F ICRRSGPRD NGHKT  +G I+ R  +EKVT R G CR + +CRF ++DG  + EHYHCR   C +  K
Sbjct:   63 RRPSRKKTKKPVWSQLRKACDRCTSKKVRCDGK------EGCFQCSRVGATCHFSICRRSGPRDSNGHKTGTIGPIIPRDGYEKVTGRRGSCRISSQCRFVSADGQSKTEHYHCRAPGCEYASK 180

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig54298.12801.1 vs. uniprot

BLAST of mRNA_H-elongata_contig54298.12801.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G066_ECTSI	4.700e-62	76.00	Zn(2)-C6 fungal-type domain-containing protein n=1...	[more]
A0A6H5JPG2_9PHAE	7.990e-61	76.00	Zn(2)-C6 fungal-type domain-containing protein n=1...	[more]
D7FXA4_ECTSI	1.010e-40	56.45	Zn(2)-C6 fungal-type domain-containing protein n=1...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001138	Zn(2)-C6 fungal-type DNA-binding domain	SMART	SM00066	gal4_2	coord: 16..65 e-value: 0.0075 score: 23.9
IPR001138	Zn(2)-C6 fungal-type DNA-binding domain	PFAM	PF00172	Zn_clus	coord: 20..56 e-value: 1.3E-7 score: 31.6
IPR001138	Zn(2)-C6 fungal-type DNA-binding domain	PROSITE	PS00463	ZN2_CY6_FUNGAL_1	coord: 21..54
IPR001138	Zn(2)-C6 fungal-type DNA-binding domain	PROSITE	PS50048	ZN2_CY6_FUNGAL_2	coord: 21..56 score: 10.227
IPR036864	Zn(2)-C6 fungal-type DNA-binding domain superfamily	GENE3D	4.10.240.10		coord: 15..56 e-value: 6.1E-8 score: 34.4
IPR036864	Zn(2)-C6 fungal-type DNA-binding domain superfamily	SUPERFAMILY	57701	Zn2/Cys6 DNA-binding domain	coord: 14..61

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig54298	contig	H-elongata_contig54298:1..1828 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig54298.12801.1	mRNA_H-elongata_contig54298.12801.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig54298 1..1828 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig54298.12801.1 ID=prot_H-elongata_contig54298.12801.1|Name=mRNA_H-elongata_contig54298.12801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
SSRKSSRKKQKNIVWSQFRKACDRCTDKKVRCDGSNPNGGFKSCTSCHRV
GKPCVFGICRRSGPRDINGHKTIAVGVIMKRGKFEKVTHRSGKCRTEECR
FANSDGSFRREHYHCRVGDCVFTGKK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001138	Zn2-C6_fun-type_DNA-bd
IPR036864	Zn2-C6_fun-type_DNA-bd_sf