prot_H-elongata_contig53896.12755.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig53896.12755.1
Unique Nameprot_H-elongata_contig53896.12755.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length89
Homology
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BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 49.3 bits (116), Expect = 9.400e-5
Identity = 29/93 (31.18%), Postives = 47/93 (50.54%), Query Frame = 0 
Query:    1 MLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSYLEVA-----VMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKRKRG 88
            +L+GC TW +      KL   H   L + +      +  PD  +L   ++      + Q  L +AG V RM D+RLP +++ GE+ +GKR +G
Sbjct:  775 LLHGCETWTIYQRHAKKLNHFHTTSLRKLLGIKWQDKV-PDTEVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQG 866
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8C5PP25_9ANUR9.400e-531.18Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53896contigH-elongata_contig53896:2248..2547 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53896.12755.1mRNA_H-elongata_contig53896.12755.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig53896 2065..2547 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig53896.12755.1 ID=prot_H-elongata_contig53896.12755.1|Name=mRNA_H-elongata_contig53896.12755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSYLEV
AVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKRKRG*
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