mRNA_H-elongata_contig53893.12754.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53893.12754.1
Unique NamemRNA_H-elongata_contig53893.12754.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 3.520e-82
Identity = 139/273 (50.92%), Postives = 192/273 (70.33%), Query Frame = 1
Query:   28 MVHALNSKVKIPHRRDVVNRMQQILVALQGSAATMMTSQYVSMTTDG*TSRANESYISFTAVFVDEEWKMVTLVLSCAKKEGSTTGEDLTASIEAMVKTHDLTGRVVVGNTDCEPSMVKAGRNL-TEKRVFTHVGCTCHRIECVTSLVFDVPGVKKSMALARSLVTRCTKSSQAADRLQELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAVELHESLDNIVPLLEPVDWAVLEMLEPVLLPFMYVQKKLE-SNNVTGSLVVPLICEL 840
            MV ALN + K+P RR++++RM+ +  AL+   A M+ +++V++TTDG TSR NESY+S T  ++D EWK+  L L CAK  G+TTGEDL A +  MV+ HDLTGRV+   TDCEPSM+KAGR L  +    +H+GC+ HR+E  TS VF+   +  ++ LAR+LV R  KSSQ A RL +LCG + + PL V+QDVET+WWST +M  RL+YL +A++LHES+D + PLL   DW VL ++EP+L PFM  QK LE +  VTGS+ +  + EL
Sbjct:    1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAEL 272          
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 6.710e-74
Identity = 134/276 (48.55%), Postives = 182/276 (65.94%), Query Frame = 1
Query:   19 FRDMVHALNSKVKIPHRRDVVNRMQQILVALQGSAATMMTSQYVSMTTDG*TSRANESYISFTAVFVDEEWKMVTLVLSCAKKEGSTTGEDLTASIEAMVKTHDLTGRVVVGNTDCEPSMVKAGRNL-TEKRVFTHVGCTCHRIECVTSLVFDVPGVKKSMALARSLVTRCTKSSQAADRLQELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAVELHESLDNIVPLLEPVDWAVLEMLEPVLLPFMYVQKKLE-SNNVTGSLVVPLICEL 840
            F  +V  LN K + P RR +V +M++I   L+   A M+  +YV++TTDG TSR+NESY+S T  ++D  W++  L L+C K  GST GEDL   I +M++ H LTGRV    TDCEPSMVKAGR L        H+GC+ HR+E  TS VF+   +  ++A AR++V R  +SSQ + RL    G + + PL V+QDVET+WWS+ +M ERL+YL +A++LHES DNI P+L   DW VL ++EP+L PFM  QK LE +  VTGS+ VP I EL
Sbjct:   34 FHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGEL 308          
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 9.070e-74
Identity = 125/281 (44.48%), Postives = 185/281 (65.84%), Query Frame = 1
Query:    1 VVDNTFFRDMVHALNSKVKIPHRRDVVNRMQQILVALQGSAATMMTSQYVSMTTDG*TSRANESYISFTAVFVDEEWKMVTLVLSCAKKEGSTTGEDLTASIEAMVKTHDLTGRVVVGNTDCEPSMVKAGRNLTEKRVFTHVGCTCHRIECVTSLVFDVPGVKKSMALARSLVTRCTKSSQAADRLQELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAVELHESLDNIVPLLEPVDWAVLEMLEPVLLPFMYVQKKLE-SNNVTGSLVVPLICEL 840
            +V+N  F +MV  L S+  +PH+R  + +++ +   L       +T ++V++T+DG TS +N++Y+ FT  ++   + +V L + C K  G TTGEDL  +++AM+  + LT R V   TDCEPSMVKAGR L E    TH+GC CHR+E +TS  F  PGV K++ALAR +VTR   SSQA+DRL+++   V +   +V+QDVET+WWST++   RL+ LRR +  HE +D+I PLL+  DW VL+++EP+  PF+  QK  E S +VT SLV+P I +L
Sbjct:    1 MVENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADL 281          
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 2.730e-62
Identity = 116/237 (48.95%), Postives = 158/237 (66.67%), Query Frame = 1
Query:  133 MTSQYVSMTTDG*TSRANESYISFTAVFVDEEWKMVTLVLSCAKKEGSTTGEDLTASIEAMVKTHDLTGRVVVGNTDCEPSMVKAGRNLTEKRVFTHVGCTCHRIECVTSLVFDVPGVKKSMALARSLVTRCTKSSQAADRLQELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAVELHESLDNIVPLLEPVDWAVLEMLEPVLLPFMYVQKKLE-SNNVTGSLVVPLICEL 840
            MT ++V++T+DG T  +N++Y+SFT  ++   + +V L L C K    T GEDL  +++AM+  + LTGR V   TDCE SMVKAGR L E    TH+GC CHR+E +TS  F  PGV K++ALAR +VTR T SSQA+DRL+++C  V +    V+QDVET+WWST+    RL+ LRR +  HE +D+  PLL+  DW VL+++E +L PFM  QK LE S  VT  LV P I +L
Sbjct:    1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADL 237          
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.340e-54
Identity = 102/223 (45.74%), Postives = 138/223 (61.88%), Query Frame = 1
Query:  175 SRANESYISFTAVFVDEEWKMVTLVLSCAKKEGSTTGEDLTASIEAMVKTHDLTGRVVVGNTDCEPSMVKAGRNLTEKRVFTHVGCTCHRIECVTSLVFDVPGVKKSMALARSLVTRCTKSSQAADRLQELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAVELHESLDNIVPLLEPVDWAVLEMLEPVLLPFMYVQKKLE-SNNVTGSLVVPLICEL 840
            S +N++Y++FT  ++   + +V L L   K  G TTGEDL  +++AM+  + LTGR V   TDCEP MVKAGR L E    +H+GC CHR E +TS  F  PGV K++AL R +VTR T SSQA++RL+++C  V +   +V+QDVET+WWST                   +D+I PLL   DW VL+++EP+L PFM  QK LE S  VT SLV   I +L
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWSTP----------------REIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADL 209          
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Match: A0A224XKI7_9HEMI (Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XKI7_9HEMI)

HSP 1 Score: 120 bits (300), Expect = 5.350e-27
Identity = 78/280 (27.86%), Postives = 146/280 (52.14%), Query Frame = 1
Query:    1 VVDNTFFRDMVHALNSKVKIPHRRDVVNRMQQILV--ALQGSAATMMTSQYVSMTTDG*TSRANESYISFTAVFVDEEWKMVTLVLSCAKKEGSTTGEDLTASIEAMVKTHDLTGRVVVGNTDCEPSMVKAGRNLTEKRVFTHVGCTCHRIECVTSLVFDVPGVKKSMALARSLVTRCTKSSQAADRLQELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAVELHESL-DNIVPLLEPVDWAVLEMLEPVLLPFMYVQKKLESNNV-TGSLVVPL 828
            VV++T FR+ + ALN   ++P+R  +   +   L    L  +   ++T +   +TTD  TS   E+YI  TA F+DE +K+ +L+L C+K + S   ED+  +++ + +   +  ++++  +D   +M KA + L E   + H GC  H I  +         ++  +   + +V    +S  A ++L     T    PL++IQ+V+T+W ST+ M ER V L  A++   ++ D  +P L   +W +L+ +  +L P+  V K +  +   T ++V+PL
Sbjct:  132 VVEDTGFRNFISALNPSYELPNRHTISKTLLPALYEECLNDTKKKILTGKSFCITTDSWTSNNTENYIGVTAHFLDENFKLHSLLLECSKTDASHKAEDIAGTLKRITQYWGIDQKIILAVSDNASNMQKAIQQLLE---WKHFGCFAHTINLIVKDALKCKDIQAIVEKVKRIVEYFRRSCTATEKLSRYQATSRNTPLKLIQEVQTRWNSTYYMLERFVSLEEAIKSTMAIIDKDLPKLNFEEWKILKEMCQILKPYENVTKAISGDKYCTAAIVIPL 408          
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Match: UPI001F5EA1FC (E3 SUMO-protein ligase ZBED1-like isoform X1 n=3 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5EA1FC)

HSP 1 Score: 109 bits (273), Expect = 2.350e-23
Identity = 89/292 (30.48%), Postives = 151/292 (51.71%), Query Frame = 1
Query:    1 VVDNTFFRDMVHALNSKVKIPHRRDVVNRM---------QQILVALQGSAATMMTSQYVSMTTDG*TSRANESYISFTAVFVDEEWKMVTLVLSCAKKEGSTTGEDLTASIEAMVKTHDLTGRVVVGNTDCEPSMVKAGRNLTEKRVFTHVGCTCHRIECVTSLVFDVPGVKKSMALARSLVTRCTKSSQAADRL---QELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAVELHESLDNI---VPLLEPVDWAVLEMLEPVLLPFMYVQKKLESNNV-TGSLVVPL 828
            +V+++ FR  VHALN   +IP RR V N M         +++   LQG          + +TTD  TS +NESY++ T  F++E++++ +++L C+   G+ T  +L+ ++  +     L G++++  TD  P++  A   + +   + H GC  H +  V         V++     +++V    +SS A +RL   Q+  G V I  L  IQD+ T+W ST  M ER+V L  AV++  +L N    +P L   +W +   L  +L PF  V ++L + +  TGSLV+ L
Sbjct:  159 IVNDSGFRSFVHALNPAYEIPSRRTVTNVMLPAAYAEANEKVQQKLQGIKT-------ICLTTDCWTSASNESYMAVTGHFINEQFRLQSVLLECSHFSGAHTSSNLSTALIKITDKFSLGGKILMVVTDNAPNIKNAISTILK---WKHFGCYAHTLNLVVQDALK--NVQEVHQKVKTIVGFFKRSSSATERLLTCQQNSGKVNIKKL--IQDLPTRWNSTLFMLERIVELSEAVKITVALCNRPTDLPSLSNDEWEICSELCSILKPFEQVSRQLSAEDYPTGSLVIVL 436          
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Match: J9JWR9_ACYPI (BED-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9JWR9_ACYPI)

HSP 1 Score: 101 bits (251), Expect = 2.200e-20
Identity = 83/263 (31.56%), Postives = 136/263 (51.71%), Query Frame = 1
Query:   40 LNSKVKIPHR--RDVVNRMQQILVALQGSA----ATMMTSQY-VSMTTDG*TSRANESYISFTAVFVDEEWKMVTLVLSCAKKEGSTTGEDLTASIEAMVKTHDLTGRVVVGNTDCEPSMVKAGRNLTEKRVFTHVGCTCHRIECVTSL-VFDVPGVKKSMALARSLVTRCTKSSQAADRLQELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAV-ELHESLDNIVPLLEPVDWAVLEMLEPVLLPFMYVQKKLESNN 801
            +N + KI H+  + +V  +QQ +  L          +MT+ + V +TTDG TS  NESYI  TA F+DE   + ++ L C K E   T ++L   ++  V+  ++  +V    +D   ++V A R+      F HV C  H I  V    + ++  ++K +   +S+V    +SS A  +LQE+   +G+PPL++ QDV T+W STH M +R+V ++ AV      L   V  L  V+W ++E    +L  F  V K++ S  
Sbjct:  472 VNHQKKIDHQLVKMIVKGVQQHVPLLYHQTHEKIQVLMTNCFAVCLTTDGWTSIKNESYIGVTAHFIDENASLQSVCLGCEKFEERHTSDNLALYLKNTVREWNIENKVAAVVSDNASNIVGAIRDCN----FRHVPCFAHSINLVVQQGLKNISHIQKKV---KSIVEHFKRSSHAQSKLQEIQQQMGLPPLKLKQDVVTRWNSTHDMFKRIVEIKDAVVSTLAILQCDVEQLTVVEWQIVEWSTNILQIFAEVTKEISSER 727          
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Match: UPI001C8ABA7E (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=UPI001C8ABA7E)

HSP 1 Score: 97.1 bits (240), Expect = 5.490e-19
Identity = 89/290 (30.69%), Postives = 147/290 (50.69%), Query Frame = 1
Query:    1 VVDNTFFRDMVHALNSKVKIPHR---RDVVNRMQQILVALQGSAATMMTS-QYVSMTTDG*TSRANESYISFTAVFVDEEWKMVTLVLSCAKKEGSTTGEDLTAS--IEAMVKTHDLTGRVVVGNTDCEPSMVKAGRNLTEKRVFTHVGCTCHRIECVTSLVFDVPGVKKSMALARSLVTRCTKSSQAADRLQELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAVELHESLDNIVPLLEPV---DWAVLEMLEPVLLPFMYVQKKLESNNV-TGSLVVPLICEL 840
            +V++  FRD++  ++ K KIP R   R+V+  + ++   L+      +   QYV++TTDG TSRANE+YI+ T  FVD+++++V+ VLS A     T    L  +  I  ++    L  +VV   TD + +M KA  +L  K    H  C  H I  +   +  +  +K  +   +++V    +SS A  + +E    +   PL +IQ+V T+W S   M ER++    A+ +  SL        P    + +VLE L  +L PF    K +      T SLV+P++CE+
Sbjct:   13 MVEDEGFRDLMQHMDPKYKIPSRTFFREVM--LPKLYKDLKKDLECELEDVQYVAITTDGWTSRANEAYITVTCHFVDKKFQLVSAVLSTASLLTPTNHSALNIADTIRQVLNEWKLLHKVVTIVTDNDATMKKACEHLQMK----HFPCFAHTINLLVQEILKLEIIKPILTKCKTVVAFMKRSSTAMTKFKE--AQMVTDPLGLIQEVPTRWNSAFQMMERILKTNGALSI--SLLGTAKAPAPFSAKEISVLEELCSLLRPFEKATKLISGGKYPTMSLVIPIVCEM 292          
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Match: A0A4Y2KUX9_ARAVE (Zinc finger BED domain-containing protein 4 n=5 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KUX9_ARAVE)

HSP 1 Score: 96.7 bits (239), Expect = 7.390e-19
Identity = 86/286 (30.07%), Postives = 144/286 (50.35%), Query Frame = 1
Query:    1 VVDNTFFRDMVHALNSKVKIPHRRDVVNRM-----QQILVALQGSAATMMTSQYVSMTTDG*TSRANESYISFTAVFVDEEWKMVTLVLSCAKKEGSTTGEDLTASIEAMVKTHDLTGRVVVGNTDCEPSMVKAGRNLTEKRVFTHVGCTCHRIECVTSLVFDVPGVKKSMAL--ARSLVTRCTKSSQAADRLQELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAVELHESL-DNIVPLLEPVDWAVLEMLEPVLLPFMYVQKKLESNN-VTGSLVVPLI 831
            +V++  FR  V ALN   ++P R  +VN +     +Q+   ++ +  T+   +   +TTD  TS  NES++S TA ++DEE+KM +L+L  +      T  +L +    +V+  +L G+++V  TD   ++V A +N  +   + H+GC  H I    +L+     V+ S  +   +S+V    +S+ A  RL E   T G    ++IQDV T+W ST  M ER V L   +    +L D  +P L   +W  L++L   L PF          N  T SL++ ++
Sbjct:  163 IVNDRGFRAFVSALNPSYRLPSRDTIVNTLLPAIYEQVSHDVRQACCTI---KKACLTTDCWTSANNESFMSVTAHYLDEEFKMNSLLLDVSILFVPHTSANLASETLKIVENWNLQGKILVTVTDNASNIVGAIKNGLK---WQHLGCFAHTI----NLILKDAQVEFSCLVEKVKSIVCHFKRSTAANSRLMECQVTSGKDAKKLIQDVPTRWNSTFYMLERFVELESCIRTTVALLDADLPHLTAGEWKTLQLLCKALKPFEDATTMASGENYATASLIIIIV 438          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53893.12754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI3.520e-8250.92Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE6.710e-7448.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE9.070e-7444.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE2.730e-6248.95Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE1.340e-5445.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A224XKI7_9HEMI5.350e-2727.86Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylu... [more]
UPI001F5EA1FC2.350e-2330.48E3 SUMO-protein ligase ZBED1-like isoform X1 n=3 T... [more]
J9JWR9_ACYPI2.200e-2031.56BED-type domain-containing protein n=1 Tax=Acyrtho... [more]
UPI001C8ABA7E5.490e-1930.69E3 SUMO-protein ligase ZBED1-like n=1 Tax=Drosophi... [more]
A0A4Y2KUX9_ARAVE7.390e-1930.07Zinc finger BED domain-containing protein 4 n=5 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53893contigH-elongata_contig53893:2496..3335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue7.3e-48
Seed eggNOG ortholog2880.D8LCS5
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size840
Cds size606
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.3998985-CDS-H-elongata_contig53893:2495..31011622930878.3998985-CDS-H-elongata_contig53893:2495..3101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53893 2496..3101 -
1691679608.483261-CDS-H-elongata_contig53893:2495..31011691679608.483261-CDS-H-elongata_contig53893:2495..3101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53893 2496..3101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.420644-UTR-H-elongata_contig53893:3101..33351622930878.420644-UTR-H-elongata_contig53893:3101..3335Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53893 3102..3335 -
1691679608.4983628-UTR-H-elongata_contig53893:3101..33351691679608.4983628-UTR-H-elongata_contig53893:3101..3335Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53893 3102..3335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53893.12754.1prot_H-elongata_contig53893.12754.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53893 2496..3101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53893.12754.1

>prot_H-elongata_contig53893.12754.1 ID=prot_H-elongata_contig53893.12754.1|Name=mRNA_H-elongata_contig53893.12754.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
MVTLVLSCAKKEGSTTGEDLTASIEAMVKTHDLTGRVVVGNTDCEPSMVK
AGRNLTEKRVFTHVGCTCHRIECVTSLVFDVPGVKKSMALARSLVTRCTK
SSQAADRLQELCGTVGIPPLRVIQDVETQWWSTHSMDERLVYLRRAVELH
ESLDNIVPLLEPVDWAVLEMLEPVLLPFMYVQKKLESNNVTGSLVVPLIC
EL
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mRNA from alignment at H-elongata_contig53893:2496..3335-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53893.12754.1 ID=mRNA_H-elongata_contig53893.12754.1|Name=mRNA_H-elongata_contig53893.12754.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=840bp|location=Sequence derived from alignment at H-elongata_contig53893:2496..3335- (Himanthalia elongata Himel1 dioecious)
GTGGTGGACAACACGTTCTTTCGAGACATGGTGCACGCGCTTAATAGCAA GGTCAAAATACCGCATCGACGTGACGTAGTCAACCGGATGCAGCAAATTC TAGTGGCACTGCAAGGGAGCGCCGCTACCATGATGACGAGCCAGTACGTC TCCATGACCACGGACGGATGAACGTCACGCGCCAACGAGTCCTACATTTC CTTCACCGCCGTCTTCGTCGATGAAGAATGGAAGATGGTGACGCTCGTGC TCAGCTGCGCGAAGAAGGAAGGTTCGACGACCGGGGAAGACCTGACTGCG TCCATCGAGGCCATGGTTAAGACCCACGACCTCACGGGGCGCGTGGTCGT GGGAAACACGGACTGCGAGCCGTCGATGGTAAAGGCGGGTCGCAATCTCA CCGAAAAGCGCGTGTTCACCCACGTTGGGTGCACCTGCCACCGGATCGAG TGCGTCACTTCGCTGGTCTTCGACGTGCCCGGCGTGAAGAAATCCATGGC TCTAGCTCGTTCCCTGGTGACTCGCTGCACCAAGTCCTCACAGGCTGCAG ACCGACTTCAGGAATTGTGCGGTACAGTCGGCATCCCCCCTTTGAGGGTT ATTCAGGACGTGGAGACGCAGTGGTGGTCGACGCACTCGATGGATGAGCG CCTGGTGTACCTTCGGCGTGCTGTCGAGTTGCACGAGTCCCTGGACAACA TCGTCCCCCTGCTAGAGCCGGTGGACTGGGCCGTCTTGGAAATGCTCGAG CCTGTGCTTTTGCCATTCATGTATGTCCAGAAGAAGCTCGAGTCCAACAA CGTGACGGGAAGCTTGGTCGTGCCGCTCATCTGCGAACTC
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Coding sequence (CDS) from alignment at H-elongata_contig53893:2496..3335-

>mRNA_H-elongata_contig53893.12754.1 ID=mRNA_H-elongata_contig53893.12754.1|Name=mRNA_H-elongata_contig53893.12754.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig53893:2496..3335- (Himanthalia elongata Himel1 dioecious)
ATGGTGACGCTCGTGCTCAGCTGCGCGAAGAAGGAAGGTTCGACGACCGG
GGAAGACCTGACTGCGTCCATCGAGGCCATGGTTAAGACCCACGACCTCA
CGGGGCGCGTGGTCGTGGGAAACACGGACTGCGAGCCGTCGATGGTAAAG
GCGGGTCGCAATCTCACCGAAAAGCGCGTGTTCACCCACGTTGGGTGCAC
CTGCCACCGGATCGAGTGCGTCACTTCGCTGGTCTTCGACGTGCCCGGCG
TGAAGAAATCCATGGCTCTAGCTCGTTCCCTGGTGACTCGCTGCACCAAG
TCCTCACAGGCTGCAGACCGACTTCAGGAATTGTGCGGTACAGTCGGCAT
CCCCCCTTTGAGGGTTATTCAGGACGTGGAGACGCAGTGGTGGTCGACGC
ACTCGATGGATGAGCGCCTGGTGTACCTTCGGCGTGCTGTCGAGTTGCAC
GAGTCCCTGGACAACATCGTCCCCCTGCTAGAGCCGGTGGACTGGGCCGT
CTTGGAAATGCTCGAGCCTGTGCTTTTGCCATTCATGTATGTCCAGAAGA
AGCTCGAGTCCAACAACGTGACGGGAAGCTTGGTCGTGCCGCTCATCTGC
GAACTCATGGTGACGCTCGTGCTCAGCTGCGCGAAGAAGGAAGGTTCGAC
GACCGGGGAAGACCTGACTGCGTCCATCGAGGCCATGGTTAAGACCCACG
ACCTCACGGGGCGCGTGGTCGTGGGAAACACGGACTGCGAGCCGTCGATG
GTAAAGGCGGGTCGCAATCTCACCGAAAAGCGCGTGTTCACCCACGTTGG
GTGCACCTGCCACCGGATCGAGTGCGTCACTTCGCTGGTCTTCGACGTGC
CCGGCGTGAAGAAATCCATGGCTCTAGCTCGTTCCCTGGTGACTCGCTGC
ACCAAGTCCTCACAGGCTGCAGACCGACTTCAGGAATTGTGCGGTACAGT
CGGCATCCCCCCTTTGAGGGTTATTCAGGACGTGGAGACGCAGTGGTGGT
CGACGCACTCGATGGATGAGCGCCTGGTGTACCTTCGGCGTGCTGTCGAG
TTGCACGAGTCCCTGGACAACATCGTCCCCCTGCTAGAGCCGGTGGACTG
GGCCGTCTTGGAAATGCTCGAGCCTGTGCTTTTGCCATTCATGTATGTCC
AGAAGAAGCTCGAGTCCAACAACGTGACGGGAAGCTTGGTCGTGCCGCTC
ATCTGCGAACTC
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