mRNA_H-elongata_contig53877.12749.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53877.12749.1
Unique NamemRNA_H-elongata_contig53877.12749.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig53877.12749.1 vs. uniprot
Match: A0A6H5K335_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K335_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 8.910e-47
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 1 
Query:    7 QWLLALCAQFWRGFRFFGKPPLGTTAGVIVCLMIYRRKVGLANMALAASVLSGLNPLVVLAVMLAWKLFARTKFLPKGCRHGP----PEGLGEEKLSDDFTREKVTKLDGE-YDNIVVGSDLGG 363
            QWLL LCAQ WR F  FGKPPLGTTAGV+V LMIYRRKVG  NM+LAA+ LSGLNPLVV+AV LAWKL+A TKFLP+GCR  P    PE LG +KLSDDF   KV+   GE YD++VVGSDLGG
Sbjct:   88 QWLLGLCAQLWRSFHLFGKPPLGTTAGVVVGLMIYRRKVGFVNMSLAAAALSGLNPLVVVAVALAWKLWASTKFLPRGCRLNPEYEAPEDLGVDKLSDDFEPAKVSTAPGEEYDHVVVGSDLGG 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53877.12749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K335_9PHAE8.910e-4770.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53877contigH-elongata_contig53877:1721..3422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_004310.1
Hectar predicted targeting categorysignal anchor
Exons3
Model size387
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53877.12749.1prot_H-elongata_contig53877.12749.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53877 1721..3422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930877.8692248-CDS-H-elongata_contig53877:1720..18611622930877.8692248-CDS-H-elongata_contig53877:1720..1861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53877 1721..1861 -
1691679608.3054657-CDS-H-elongata_contig53877:1720..18611691679608.3054657-CDS-H-elongata_contig53877:1720..1861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53877 1721..1861 -
1622930877.885972-CDS-H-elongata_contig53877:2347..24771622930877.885972-CDS-H-elongata_contig53877:2347..2477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53877 2348..2477 -
1691679608.3187046-CDS-H-elongata_contig53877:2347..24771691679608.3187046-CDS-H-elongata_contig53877:2347..2477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53877 2348..2477 -
1622930877.9019175-CDS-H-elongata_contig53877:3306..34221622930877.9019175-CDS-H-elongata_contig53877:3306..3422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53877 3307..3422 -
1691679608.3341215-CDS-H-elongata_contig53877:3306..34221691679608.3341215-CDS-H-elongata_contig53877:3306..3422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53877 3307..3422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53877.12749.1

>prot_H-elongata_contig53877.12749.1 ID=prot_H-elongata_contig53877.12749.1|Name=mRNA_H-elongata_contig53877.12749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MEQWLLALCAQFWRGFRFFGKPPLGTTAGVIVCLMIYRRKVGLANMALAA
SVLSGLNPLVVLAVMLAWKLFARTKFLPKGCRHGPPEGLGEEKLSDDFTR
EKVTKLDGEYDNIVVGSDLGGEVTGREE*
back to top

mRNA from alignment at H-elongata_contig53877:1721..3422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53877.12749.1 ID=mRNA_H-elongata_contig53877.12749.1|Name=mRNA_H-elongata_contig53877.12749.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1702bp|location=Sequence derived from alignment at H-elongata_contig53877:1721..3422- (Himanthalia elongata Himel1 dioecious)
ATGGAGCAGTGGCTACTGGCACTCTGTGCGCAATTCTGGCGTGGTTTTCG
CTTTTTTGGGAAGCCGCCCCTTGGCACCACGGCGGGCGTGATTGTCTGCC
TCATGATTTACCGCCGGTGAGAAACGACACCCCTCGCAAGCGGGAGAGAA
TTTTCTTTGATCTTTTGAAGGTTGCGTGTCACCACCATTTGTAAGCTAGC
ATGGGTGCAGGTCTTTCGGCGCTGTTTTCGTGGCGCGCCTATTTACACCC
CATGTGTTTATGTCGAACCACCACCCAGAGCTTCTTTTATTGATTTGGGT
GTGGGTTAGGGTCGGGGTCGGGTTTGGTCCACCAATTATCTTGACTACGT
ATAAAGGTTTCAGAGAGACTATCTGTTTTACTTCGCATGAAATATCTCCA
TATTTTGCTGATTATAGATAAATAATTATCAGAAACTGAGGTCAGGGTGG
TGGTTCGACTAAAACACCCATGGGGTGTAAATAGGCGGCGCCTCTGTCTT
CGACTGTGTCGCGAGTAGCTTAAGTAGAGGGTTCACCGTGCAATAGTAGA
GTAAGCACACAGTGTTGTACCCGCTAGCCGATGGTGTAGTTGTGAAGCAG
GGTCAATCTTTCACGAGTATTGCGCCTCCCAGCCGCCGGACTGCCCAAAA
CGAGCGTGATTGGCGACCCCTCCCCCATCCCCTGGTAGGGCCGCGCAGCC
CGTCTTTAATCCGCTGCGCCTATTTTGACGTCCTAGTAAGCAGTACACGA
TAGTCTCACCGTCTCACCCGTCCCGTCCGTGCGAGCGAGCGATTCCCGTC
GGCAGCACCCTCTGCTGCTCCACACGGCGGCCCCGTGTCATGAGGAGCCT
TCCCCAAAATCTTCCTTTTGAGACTTATTTTCCCGGGCTTCAACTAATGA
AGCAAAAAAAAAGCAAAGCAAACGATCGAACGACTCGACGCGCAGGAAGG
TCGGCTTGGCGAACATGGCGCTCGCCGCCTCCGTGTTGTCCGGCCTTAAC
CCGTTGGTGGTGTTGGCGGTTATGCTGGCTTGGAAGCTGTTTGCCAGGAC
CAAGTTTCTACCCAAGGGCTGCAGGGTCCACCCAGAGGCAAGCAAAACGT
TTTTGGAGCTGTAGAGTGCCCGCCGGGGTTTCCACACCGCGAGATTGGCT
GCTTCGCAAAGAGGTTTTGGGACAGAAAACAATTTGTTCTGCTGTGAGCA
GTAGTGACCGTGAGGGCTTTATAAGATATTTCGATGCGGTGGGGAGTTGG
GGGTTCCGTCGTATGATGGCGTGTTGTTGCGGATTATCGTGTGCCCCGGC
GAGCGTCGGCGCCGTCGTATTTTCCTTTTCCAATTTTGTTTTGTTTGATT
TTTGGTTTATGCTTGCTTGTTCCGTACTATAAATATACTATACTACACTT
TTCTTTCCCTTTCTATTTTTTATGTCTTCTTTAATTTCTTTGATCATTTT
TTAGTTTAATTAATGTTATTGTTATTTTGTTATTTTATCATTTTTCTTCC
TTCCCCCACCCCTCCCCCCCTCCTCCCGGCTTTTTTCCCATTTTTCCCTC
TACGTTGCCAGCACGGGCCACCCGAAGGCCTTGGCGAGGAAAAGCTTTCC
GACGACTTCACCCGGGAGAAGGTCACAAAGCTCGATGGGGAATACGACAA
CATAGTGGTGGGGTCTGATCTAGGAGGTGAGGTGACCGGAAGAGAAGAGT
GA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig53877:1721..3422-

>mRNA_H-elongata_contig53877.12749.1 ID=mRNA_H-elongata_contig53877.12749.1|Name=mRNA_H-elongata_contig53877.12749.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig53877:1721..3422- (Himanthalia elongata Himel1 dioecious)
ATGGAGCAGTGGCTACTGGCACTCTGTGCGCAATTCTGGCGTGGTTTTCG
CTTTTTTGGGAAGCCGCCCCTTGGCACCACGGCGGGCGTGATTGTCTGCC
TCATGATTTACCGCCGATGGAGCAGTGGCTACTGGCACTCTGTGCGCAAT
TCTGGCGTGGTTTTCGCTTTTTTGGGAAGCCGCCCCTTGGCACCACGGCG
GGCGTGATTGTCTGCCTCATGATTTACCGCCGGAAGGTCGGCTTGGCGAA
CATGGCGCTCGCCGCCTCCGTGTTGTCCGGCCTTAACCCGTTGGTGGTGT
TGGCGGTTATGCTGGCTTGGAAGCTGTTTGCCAGGACCAAGTTTCTACCC
AAGGGCTGCAGGGAAGGTCGGCTTGGCGAACATGGCGCTCGCCGCCTCCG
TGTTGTCCGGCCTTAACCCGTTGGTGGTGTTGGCGGTTATGCTGGCTTGG
AAGCTGTTTGCCAGGACCAAGTTTCTACCCAAGGGCTGCAGGCACGGGCC
ACCCGAAGGCCTTGGCGAGGAAAAGCTTTCCGACGACTTCACCCGGGAGA
AGGTCACAAAGCTCGATGGGGAATACGACAACATAGTGGTGGGGTCTGAT
CTAGGAGGTGAGGTGACCGGAAGAGAAGAGTGACACGGGCCACCCGAAGG
CCTTGGCGAGGAAAAGCTTTCCGACGACTTCACCCGGGAGAAGGTCACAA
AGCTCGATGGGGAATACGACAACATAGTGGTGGGGTCTGATCTAGGAGGT
GAGGTGACCGGAAGAGAAGAGTGA
back to top