mRNA_H-elongata_contig53700.12726.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig53700.12726.1
Unique Name	mRNA_H-elongata_contig53700.12726.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: A0A6H5L8Y3_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Y3_9PHAE)

HSP 1 Score: 383 bits (984), Expect = 1.790e-115
Identity = 263/634 (41.48%), Postives = 350/634 (55.21%), Query Frame = 2

Query:   11 AFCGAICAENARRTWHGSECLDISG-KPLEPAMLGLSPECRAALRAVRRTMRE----------------------ETPGASSAHSCAILSTSDSGGNLAIGF-----GDLQEHYTVRSPRQRDLLETEAAIATVLATGSGMESRENDRGMDRPGD-----RLVEESRETLAAKLATALVKVSTNAFAVSTLRGTEPAVG-SVQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAACDPPKGNVGRTKTHPGSSNIWPGATAQ---------------SHITEFGCTEAR---CHGTLNVGMSP-------------TQSPSYEKEVEGQRLPAAQISEL----------PSSQSSKCLFLWCNRCGARLSQRSTEVLLEEDEDDRRLWADVLLAVARLEDQSRMEDGLDE-----------TRRTCRQQKCLKTSAPSAVSLSEAVANSATAAKD---LVVQRVQWRDRRLSPASMRRATAHDVHARLLAMEGNFSRAADACAVALKVLARRFAPEEPELGVEYLKLAELCFNAGLLERCLAACQRARVSLDVCLPSSDEQLAALSKMQALCAA 1645
            AFCG  C+  A + WHGSEC+D S   PLEPA+ G+SP C  ALRA +R  R+                      ET GA       I S+   GG   + +     G+LQEHY  RS R+RDLLETEAA+  VLA G G +   +   + R G      R   E+ E +AA+LAT LVKVSTNAF +S+LR ++   G +V+ + H  VAV LY  A+M+NHSC PNALA+F GGE+R+VATR I+ GEPV+ISYGP ASK          +S  S+R++ L  AYFFRC C AC P       T +   S     G   Q               S  T+F CTEA    C GTL VG+ P             T        VE   +P+  I+ +          PS +  + + LWC+RCG+R+     + LL+ED++DRRLW +   A++  E  +    G D+           +R    ++ C K+S     S++ A +  + A+ D   LV++R++WRDR L+  SMRRA AHD+HAR+LA   +F  AADACA A+ VL RRF+PE+ ELG+E+LKLAELCFNAG  ++C AAC +A+ SL VCL   DEQL AL+ +QALCAA
Sbjct:  191 AFCGRGCSTAALQEWHGSECVDASSCTPLEPALSGVSPTCMVALRAYKRARRQGGQLPKRTDSGQGDAGVAVTVTETQGACQNRFGNIASSPPRGGGEDVAWPKVKLGNLQEHYAARSARERDLLETEAAVTAVLANGFGSDIDLDADSLGRSGSGRCATRTSTEACELVAAELATTLVKVSTNAFTISSLRCSDSRAGHNVRPLKHATVAVGLYLVASMINHSCRPNALASFHGGEMRVVATRAIERGEPVTISYGPLASK----------MSSTSERQAYLSRAYFFRCECIACHPLSEETATTPSRR-SRGSEGGDERQLTDRDKEGKAIEATFSKRTDFACTEAESGGCPGTLCVGVPPXXXXXXXXXXXXSTTQGCINSGVESSNVPSPCINRVQAVASTSSTSPSPRRMEVVVLWCDRCGSRVPPDLADALLKEDKEDRRLWEEAKAAMSSSEKGAGRSGGDDDGELKSMSPPRRSRPNTGERWC-KSSTTEDGSVNAAPSPGSFASSDALSLVMERIRWRDRYLTTTSMRRAVAHDMHARVLASREDFPGAADACARAVSVLKRRFSPEDQELGIEFLKLAELCFNAGWTDKCTAACVKAKESLGVCLQPGDEQLEALNTLQALCAA 812

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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: D7FV15_ECTSI (Set and mynd domain containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV15_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 3.380e-104
Identity = 238/558 (42.65%), Postives = 317/558 (56.81%), Query Frame = 2

Query:  167 ETPGASSAHSCAILSTSDSGGNLAIGF-----GDLQEHYTVRSPRQRDLLETEAAIATVLATGSGMES-----RENDRGMDRPGDRLVEESRETLAAKLATALVKVSTNAFAVSTLRGTEPAVG-SVQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAACDPPKGNV-----GRTKTHPGSSNIW------PGATAQ---SHITEFGCTEAR---CHGTLNVGMSP-------------TQSPSYEKEVEGQRLP----------AAQISELPSSQSSKCLFLWCNRCGARLSQRSTEVLLEEDEDDRRLWADVLLAVARLEDQSRMEDGLDE-----------TRRTCRQQKCLKTSAPSAVSLSEAVANSATAAKD---LVVQRVQWRDRRLSPASMRRATAHDVHARLLAMEGNFSRAADACAVALKVLARRFAPEEPELGVEYLKLAELCFNAGLLERCLAACQRARVSLDVCLPSSDEQLAALSKMQALCAA 1645
            ET GA      ++ S+   GG   + +     G+LQEHY  RS R+RDLLETEAA+  VLA+G G  +                 R   E+ E +AA+LAT LVKVSTNAF VS+LR ++P  G +V+ + H  VAV LY  A+M+NHSC PNALA+F GGE+R+VATR I+ GEPV+ISYGP ASK          +S AS+R++ L  AYFFRC C AC PP         GR++   G            G   +   S  T+F CTEA    C GTL VG+SP             T         E   +P          A+  S  PS +  + + LWC+RCG+R+     + LL+ED++DRRLW +   A++  E ++    G D+           +R    ++ C K+S     S++ A    ++A+ D   LVV+R++WRDR L+  SMRRA AHD+HAR+LA   +F  AADACA A+ VL RRF+PE+ ELG+E+LKLAELCFNAG  ++C AAC +AR SL VCL   DEQL AL+ +QALCAA
Sbjct:   36 ETRGACHDRFGSVASSPPRGGGDDVAWPNVKLGNLQEHYAARSARERDLLETEAAVTAVLASGFGSGTDLXXXXXXXXXXXXXATRTSTEACELVAAELATTLVKVSTNAFTVSSLRCSDPPAGHNVRPLKHATVAVGLYLVASMMNHSCRPNALASFHGGEMRVVATRAIERGEPVTISYGPLASK----------ISSASERQAYLSRAYFFRCECIACHPPPEETATTPSGRSRGSEGGDERQLTDREKEGRATEATFSKRTDFACTEAESGACPGTLRVGVSPXXXXXXXXXXXXSTTQGCLISGAESSNVPSPCFNRVQAVASLSSTSPSPRRMEVVVLWCDRCGSRVPPDLADALLKEDKEDRRLWEEAKAAMSSSEKEAGRCGGGDDGELKSMPPPRRSRPNTGERSC-KSSTTEDGSVNAAPFPGSSASSDTLSLVVERIRWRDRYLTTTSMRRAVAHDMHARVLASREDFPGAADACARAVSVLKRRFSPEDQELGIEFLKLAELCFNAGWTDKCTAACVKARESLGVCLQPGDEQLEALNTLQALCAA 582

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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: A0A8B7Y3H6_ACAPL (SET and MYND domain-containing protein 4-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y3H6_ACAPL)

HSP 1 Score: 72.4 bits (176), Expect = 2.840e-9
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 2

Query:  512 VQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAAC 796
            V +    R+A A+Y TA++LNHSC PN +A+FDG  + + ATRDI+ GE +   YGP A   S             +R+ +L+  YFF C C AC
Sbjct:  332 VDTTKQARLATAVYPTASLLNHSCQPNTIASFDGAILTMRATRDIQPGEEILHCYGPHAKHMSR-----------DERQKALQEQYFFTCTCHAC 415

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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: A0A139APV2_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139APV2_GONPJ)

HSP 1 Score: 71.6 bits (174), Expect = 5.890e-9
Identity = 75/277 (27.08%), Postives = 112/277 (40.43%), Query Frame = 2

Query:    8 EAFCGAICAENARRTWHGSEC-LDISGKPLEPAMLGLSPECRAALRAVRRTMREETPG--ASSAHSCAILSTSDSGGNLAIGFGDLQEHYTVRSP---RQRDLLETEAAIATVLATGSGMESRENDRGMDRPGDRLVEESRETLAAKLATALVKVSTNAFAVSTLRGTEPAVGSVQSINHTRVAVALYCTAAMLNHSCVPNALATF-DGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAACDPPKGNV 817
            E +CG  C   A   WH  EC L + G  +   +    P  R  LR   R   E + G  A +    + L  +    +L  G  +L       S       DLL   A  A V+A  S     E  R   +P       S E     L  ++++   N  AV  +  T+    S        V  A+Y   +M NHSCVPNA+ATF DG  + +   + +++G  V+ISYGP+ ++          +     RR  L+  + F C C AC+  + + 
Sbjct:  307 EMYCGGPCQVAAWEAWHHVECELAVGGLGVSAFLRVAPPHVRLGLRGFWRWRAEMSHGEKAPAPTDDSALDLTPQWTSLWTGLSELVSQLNAASSLDLNHPDLLFESALAAAVVAEISPEPLLEPHR---QPPHESAAASAEIA---LTMSMLRALRNTMAVKRVVRTQEGESSADEYER-HVGSAVYLFGSMANHSCVPNAVATFVDGANLTLRLVKPVQSGSEVTISYGPTDTR----------IPSREVRRQILQDKWDFCCRCGACETERSST 566

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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: A0A2G8L8R3_STIJA (SET and MYND domain-containing protein 4 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L8R3_STIJA)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-8
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 2

Query:  512 VQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAAC 796
            V++    RVA A+Y T +++NH C PN +A+F+G ++ I ATR+IK GE +  SYGP  +    A           +R   L+  YFF C C+AC
Sbjct:  369 VETTEQVRVASAVYPTVSLMNHGCDPNVIASFNGSDVTIRATRNIKNGEEICHSYGPHKNHMPVA-----------ERLRKLKEQYFFDCTCSAC 452

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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: A0A067CP86_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CP86_SAPPC)

HSP 1 Score: 70.9 bits (172), Expect = 1.260e-8
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 2

Query: 1358 ATAHDVHARLLAMEGNFSRAADACAVALKVLARRFAPEEPELGVEYLKLAELCFNAGLLERCLAACQRARVSLDVCLPSSDEQLAALSKMQALCA 1642
            A A D+ A+LLAM G F+ A+DAC  A+ VL   + P + ELG EYLK A+L FNA     C     RA+ SL + LP++D   A +++MQ+  A
Sbjct: 1191 AEALDLRAQLLAMHGAFAAASDACLAAIAVLETHYDPLDAELGHEYLKAAQLLFNAARWPSCRMYLARAKASLTLHLPATDALHAEMTEMQSYVA 1285

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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: UPI0018D77732 (SET and MYND domain-containing protein 4-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D77732)

HSP 1 Score: 70.5 bits (171), Expect = 1.480e-8
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2

Query:  512 VQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAAC 796
            V +    R+A A+Y TA++LNHSC PN +A+FDG  + + ATRDI+ G+ +   YGP A       H +  V     R+ +L+  YFF C C AC
Sbjct:  670 VDTTKQVRLATAIYPTASLLNHSCQPNVIASFDGAVLTMRATRDIQPGQEILHCYGPHAK------HMSRDV-----RQRALQEQYFFTCTCHAC 753

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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: UPI0001CB9E1E (SET and MYND domain-containing protein 4-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB9E1E)

HSP 1 Score: 69.3 bits (168), Expect = 2.680e-8
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 2

Query:  404 ESRETLAAKLATALVKVSTNAFAVSTLRG-TEPAVGSVQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAACDPPK 808
            ++ + +A+ L   L+++  N  AV+ +   T+ +   V +    R+AVA+Y TA+MLNHSC PN +A +DG ++ I AT  IK G  V   YGP  S                +R   LR  Y+F C C  C  P+
Sbjct:  327 DAEKAVASVLLHHLLQLRCNVHAVTEVATKTDSSTSFVATTQQIRIAVAVYGTASMLNHSCTPNVIAGYDGNQLTIRATEMIKKGGEVLHCYGPRVSDM-----------FRDERLKVLRDQYYFTCKCMFCGIPQ 451

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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: UPI000B45D5F6 (SET and MYND domain-containing protein 4-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45D5F6)

HSP 1 Score: 65.9 bits (159), Expect = 2.410e-7
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = 2

Query:  386 GDRLVEESRETLAAKLATALVKVSTNAFAVSTLRGTEPAVGS-VQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAAC 796
            G R V E    +   L   + ++  NA A++ L+ T+    S V + +  RVA A+Y TA+++NHSC P  +++FD   + + A RD+K G  +   YGP   + S A            RR  L+  YFF C C AC
Sbjct:  162 GARDVSEVERYVGGLLLRHIQQLVCNAHAITELQVTQATDQSLVDTKSQVRVATAIYPTASLMNHSCDPTIISSFDRDSLVVRAVRDVKEGMEIYNCYGPHHKRMSGA-----------DRRQILKEQYFFDCQCNAC 288

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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: T0PZ94_SAPDV (SET and MYND domain-containing protein 4 n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PZ94_SAPDV)

HSP 1 Score: 66.2 bits (160), Expect = 2.730e-7
Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 2

Query: 1283 TAAKDLVVQRVQWRDRRLSPASMRRATAHDVHARLLAMEGNFSRAADACAVALKVLARRFAPEEPELGVEYLKLAELCFNAGLLERCLAACQRARVSLDVCLPSSDEQLAALSKMQALCAAQ 1648
            TA   LV  RV      L P  +  A A D+ A+L A++G+F+ A+DAC  A+ +L   + P + ELG EYLK A+L FNA     C     RA+ SL + LP++D     +++M A  A++
Sbjct:  672 TAVDALVASRVTA----LPPNHLAIAEALDLRAQLWAVQGDFAAASDACVQAIALLEAHYDPLDAELGHEYLKAAQLLFNAERWPSCRVYLGRAKRSLALHLPATDALFREMAEMHAYVASR 789

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot

BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L8Y3_9PHAE	1.790e-115	41.48	SET domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FV15_ECTSI	3.380e-104	42.65	Set and mynd domain containing protein, putative n...	[more]
A0A8B7Y3H6_ACAPL	2.840e-9	41.05	SET and MYND domain-containing protein 4-like n=1 ...	[more]
A0A139APV2_GONPJ	5.890e-9	27.08	Uncharacterized protein n=1 Tax=Gonapodya prolifer...	[more]
A0A2G8L8R3_STIJA	1.130e-8	38.95	SET and MYND domain-containing protein 4 n=1 Tax=S...	[more]
A0A067CP86_SAPPC	1.260e-8	44.21	Uncharacterized protein n=1 Tax=Saprolegnia parasi...	[more]
UPI0018D77732	1.480e-8	41.05	SET and MYND domain-containing protein 4-like n=1 ...	[more]
UPI0001CB9E1E	2.680e-8	33.82	SET and MYND domain-containing protein 4-like n=1 ...	[more]
UPI000B45D5F6	2.410e-7	33.33	SET and MYND domain-containing protein 4-like n=1 ...	[more]
T0PZ94_SAPDV	2.730e-7	37.70	SET and MYND domain-containing protein 4 n=1 Tax=S...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig53700	contig	H-elongata_contig53700:2..3513 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	357.5
Seed ortholog evalue	1.1e-95
Seed eggNOG ortholog	2880.D7FV15
EggNOG free text desc.	SET domain
EggNOG OGs	COG2940@1,KOG2084@2759
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Ec32 ortholog description	MYND zinc finger and SET domain protein
Ec32 ortholog	Ec-14_003800.1
Exons	3
Model size	2941
Cds size	1566
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig53700.12726.1	prot_H-elongata_contig53700.12726.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig53700 105..2241 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930875.5160284-UTR-H-elongata_contig53700:1..104	1622930875.5160284-UTR-H-elongata_contig53700:1..104	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig53700 2..104 +
1691679607.2826967-UTR-H-elongata_contig53700:1..104	1691679607.2826967-UTR-H-elongata_contig53700:1..104	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig53700 2..104 +
1622930875.5940838-UTR-H-elongata_contig53700:2241..3513	1622930875.5940838-UTR-H-elongata_contig53700:2241..3513	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig53700 2242..3513 +
1691679607.3336976-UTR-H-elongata_contig53700:2241..3513	1691679607.3336976-UTR-H-elongata_contig53700:2241..3513	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig53700 2242..3513 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930875.5473948-CDS-H-elongata_contig53700:104..452	1622930875.5473948-CDS-H-elongata_contig53700:104..452	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig53700 105..452 +
1691679607.2940686-CDS-H-elongata_contig53700:104..452	1691679607.2940686-CDS-H-elongata_contig53700:104..452	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig53700 105..452 +
1622930875.5680592-CDS-H-elongata_contig53700:733..1006	1622930875.5680592-CDS-H-elongata_contig53700:733..1006	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig53700 734..1006 +
1691679607.3060825-CDS-H-elongata_contig53700:733..1006	1691679607.3060825-CDS-H-elongata_contig53700:733..1006	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig53700 734..1006 +
1622930875.5802302-CDS-H-elongata_contig53700:1296..2241	1622930875.5802302-CDS-H-elongata_contig53700:1296..2241	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig53700 1297..2241 +
1691679607.3206007-CDS-H-elongata_contig53700:1296..2241	1691679607.3206007-CDS-H-elongata_contig53700:1296..2241	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig53700 1297..2241 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig53700:2..3513+
coding sequence from alignment at H-elongata_contig53700:2..3513+

protein sequence of mRNA_H-elongata_contig53700.12726.1

>prot_H-elongata_contig53700.12726.1 ID=prot_H-elongata_contig53700.12726.1|Name=mRNA_H-elongata_contig53700.12726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=522bp
MLGLSPECRAALRAVRRTMREETPGASSAHSCAILSTSDSGGNLAIGFGD
LQEHYTVRSPRQRDLLETEAAIATVLATGSGMESRENDRGMDRPGDRLVE
ESRETLAAKLATALVKVSTNAFAVSTLRGTEPAVGSVQSINHTRVAVALY
CTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASP
AYHAAFSVSLASQRRSSLRSAYFFRCGCAACDPPKGNVGRTKTHPGSSNI
WPGATAQSHITEFGCTEARCHGTLNVGMSPTQSPSYEKEVEGQRLPAAQI
SELPSSQSSKCLFLWCNRCGARLSQRSTEVLLEEDEDDRRLWADVLLAVA
RLEDQSRMEDGLDETRRTCRQQKCLKTSAPSAVSLSEAVANSATAAKDLV
VQRVQWRDRRLSPASMRRATAHDVHARLLAMEGNFSRAADACAVALKVLA
RRFAPEEPELGVEYLKLAELCFNAGLLERCLAACQRARVSLDVCLPSSDE
QLAALSKMQALCAAQLRLSGI*

mRNA from alignment at H-elongata_contig53700:2..3513+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig53700.12726.1 ID=mRNA_H-elongata_contig53700.12726.1|Name=mRNA_H-elongata_contig53700.12726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3512bp|location=Sequence derived from alignment at H-elongata_contig53700:2..3513+ (Himanthalia elongata Himel1 dioecious)
CGGCCTCGAAGCCTTTTGCGGTGCCATATGCGCGGAGAACGCACGGAGAA
CGTGGCACGGATCCGAATGCCTCGATATATCTGGAAAACCACTGGAGCCA
GCCATGTTGGGATTATCCCCCGAGTGTAGAGCGGCGCTCAGAGCAGTCCG
GCGAACCATGCGGGAGGAAACACCCGGGGCCTCGAGCGCTCATTCTTGTG
CTATCCTTTCCACCTCAGACAGTGGTGGAAACCTGGCAATAGGGTTCGGT
GACCTTCAAGAACACTACACGGTACGATCACCACGCCAGCGTGACTTGTT
GGAAACCGAAGCGGCAATTGCAACAGTCCTTGCAACCGGCAGCGGTATGG
AAAGCAGAGAAAACGACCGCGGCATGGATAGGCCCGGTGACCGTTTGGTC
GAGGAATCACGCGAGACTCTCGCTGCTAAGCTAGCGACGGCGTTGGTGAA
GGTGACAAGAAAGACTGTTCTTGGGGTGTACAGTAATGTTGGAATTTCCA
GCGTCTTTGTCCTAAAGGGGTTTGTGTCGACCTGGTCGAGCTCGATTCCA
TGCTGAGCCCTGTCAGCTACTTCTCTCCGCGTTCAATATCCGCTCCTCAC
GAATGGTTAAGCGTCGCCTCTATTTTTTTTTACCGTGCTTGTTTGCGTTT
CGGGAAAGCCTCGGTCGACATGAGATATACCATCAACGAAGCATACAACG
CGATCCCGCCAAAAAACGATCCGCTTGACCAGGTTAGTACTAACGCCTTC
GCCGTGTCGACGCTTCGTGGAACGGAGCCCGCAGTTGGTAGCGTACAATC
AATAAACCACACACGGGTGGCCGTTGCGCTCTACTGCACGGCGGCGATGT
TAAACCATTCCTGTGTCCCCAATGCCCTAGCCACGTTCGACGGAGGGGAG
ATACGAATCGTCGCTACGCGTGATATAAAGACGGGGGAGCCTGTGAGCAT
TTCCTACGGACCGTCGGCATCGAAGGCAAGTCCTGCTTACCACGCGGCGT
TTAGTGTACTCTAGCGATGTCGGGAGGGTAATATTTTAGTGCGAGGTCGT
TGGCCGTACTGTGGTACTTGTTCCAGAGTGCAGGACGAAACCTCGCGAGT
ATGTTGTTTTCATTGATTTCGCCGTTTTTTCCGTAATCGTTTATTTTTTT
ACCGAGGGTTACGCGTATGGTTGACCTTAAAGACATACCCGAAATTGTCC
TGCGCGAATATATCCCATGTTGTGGGAATAGTGGAGTGATCATCAGCTAC
CCGTAGTCCTCTAGACCACCTGCATATCCATCCACCGGCCGACAGGTTTC
GTTGGCTTCCCAACGGCGTTCATCCCTTCGAAGCGCCTACTTCTTCCGTT
GCGGGTGCGCCGCGTGCGACCCCCCAAAAGGTAACGTGGGTAGGACTAAG
ACTCACCCCGGAAGCTCGAATATTTGGCCCGGAGCCACGGCGCAATCCCA
TATCACTGAGTTTGGATGTACAGAGGCTCGGTGCCATGGGACGCTCAACG
TTGGGATGTCTCCGACGCAGTCGCCATCGTATGAAAAAGAGGTGGAAGGG
CAAAGGTTGCCGGCCGCACAAATCTCAGAGCTCCCGTCCTCGCAATCTAG
TAAGTGCCTGTTCCTTTGGTGTAACCGCTGTGGAGCTCGCTTGTCCCAGC
GTTCGACAGAAGTGCTGCTGGAGGAGGACGAAGACGACCGACGCCTTTGG
GCGGATGTATTGTTGGCGGTAGCTCGCTTAGAAGACCAATCCCGCATGGA
GGATGGCTTAGATGAAACTAGACGCACATGTAGGCAGCAGAAATGTCTGA
AGACGTCTGCGCCTTCAGCAGTATCATTGAGCGAGGCTGTGGCTAACTCG
GCGACCGCGGCCAAGGATCTTGTAGTTCAACGAGTTCAGTGGCGTGACCG
TCGACTGTCTCCTGCTTCAATGAGGCGGGCGACTGCGCACGATGTGCACG
CGCGTCTGCTTGCCATGGAAGGGAACTTCTCGAGGGCTGCCGATGCCTGT
GCGGTAGCGTTGAAAGTGCTCGCGCGGAGGTTCGCGCCGGAGGAACCGGA
ACTGGGCGTCGAGTATCTTAAATTGGCTGAGCTATGCTTCAACGCGGGTC
TCTTGGAGCGATGCTTGGCGGCCTGTCAACGCGCGAGGGTTTCGCTGGAC
GTGTGCCTACCGTCAAGTGACGAGCAGCTCGCGGCGTTAAGCAAAATGCA
GGCCTTGTGTGCGGCCCAACTGCGCCTTTCGGGGATATAGCATAATCAAT
TTTGCCATATTCTCCCGGTGTACGATAGTGCACAGCATCACGGAATCTGG
GGCTGGTGCCGTAGTCCTATTCATAAAAGCCTTCGTGCGTCATCGATTTT
GATGAGGGTAGAGCGCGTTGGACTCCTTTGACGTGGCACCCCGTGATGAG
GGTTTCTTCGCCAGCTCTTCGCGGTCAGATCTGCCATTTGCCGAACGTTG
CTCCCCATTTTTCGAATATAACTTATGTGCCTGTTGCTACGTACGGTTGT
CCCTGGATTGCCCCGTCCCCCGAGCGGTGCATGACTTCGACACCCAAAAA
TATCAGATCAGTATCCGCGGATCTTCCTTGGTAAATTTTCCCAGCTCTGG
ATCCCAAAGAAAACAATTATTTTATGAGGTCAGTAGTATTATTAGTAGTG
TTGTCATTCCATTTGTTCTGGACGTCAGACTTCTGGACGCACCAGCCGGG
GTCACATAGGATTTCTCTGCCTTCCTTCTGCAATGCTTGCCTTAATTTTA
ATTTTTTATCGCGAGGAGGATTCAGCCGTCACTTTCCCTCGTCGACTGTG
AAGCCGATTTTTGTCTACCCACGAAATAATCGTTCTCCATTTGTTGGGCA
TGATGTGAGAGAAATCCCAGTTCGTGTAACTACGCACCGAGATTCGAATT
CGCGTCCCAACGTCAGAAGATTTCGAGGTTACGAAATGATCCACCGGGGC
TTCCGTCATGAATTATCTCCCGAAATGAGCTGCCCCACATTGTATTTAAT
TGCTAAACCAAATGACACTGCCTCGGTAGTAGTAGGTGGGTCCTGAAATC
ACCTAAAGCGCCGTCAAAGAGAGTGTGATGAAAGTAGAGTCTGAACTGCT
GGGGTGTGTATCTCGCTAGTGATTATGGCCTAAAATATGGCGTGCGCTGG
AAATCTATTTTTGCTTAAATTTCACTCAGCACATAATTTCAGAGAAGCTA
TGTGCGGCTTGCCGCACACCGAGATTTTGGGTCCGCGCTTTTTGAAAAAA
AAATGGGGTCCATATTTTCGCCGTAGGCGATTTTTTAACATACCACTTTG
GTCCGAAATATAGGGGCCGTCTAGGCTCAAATGTTGATATCTTCGGATAG
AAAATGTTTTTTTTACCCGGATTTTTGAATTGTGTCCTCTGTGACTTGGT
GCGGTGGGAAGTGGTCCTTTAGATGAATCTGTCAGCCTGACACATGTTAA
CCTAGTAAGGGCAAACGGACCCCGCCTCACAAACGCGCCCGCTGGGATTG
GGGTAAACTGGG

Coding sequence (CDS) from alignment at H-elongata_contig53700:2..3513+

>mRNA_H-elongata_contig53700.12726.1 ID=mRNA_H-elongata_contig53700.12726.1|Name=mRNA_H-elongata_contig53700.12726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3132bp|location=Sequence derived from alignment at H-elongata_contig53700:2..3513+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGGATTATCCCCCGAGTGTAGAGCGGCGCTCAGAGCAGTCCGGCG
AACCATGCGGGAGGAAACACCCGGGGCCTCGAGCGCTCATTCTTGTGCTA
TCCTTTCCACCTCAGACAGTGGTGGAAACCTGGCAATAGGGTTCGGTGAC
CTTCAAGAACACTACACGGTACGATCACCACGCCAGCGTGACTTGTTGGA
AACCGAAGCGGCAATTGCAACAGTCCTTGCAACCGGCAGCGGTATGGAAA
GCAGAGAAAACGACCGCGGCATGGATAGGCCCGGTGACCGTTTGGTCGAG
GAATCACGCGAGACTCTCGCTGCTAAGCTAGCGACGGCGTTGGTGAAGAT
GTTGGGATTATCCCCCGAGTGTAGAGCGGCGCTCAGAGCAGTCCGGCGAA
CCATGCGGGAGGAAACACCCGGGGCCTCGAGCGCTCATTCTTGTGCTATC
CTTTCCACCTCAGACAGTGGTGGAAACCTGGCAATAGGGTTCGGTGACCT
TCAAGAACACTACACGGTACGATCACCACGCCAGCGTGACTTGTTGGAAA
CCGAAGCGGCAATTGCAACAGTCCTTGCAACCGGCAGCGGTATGGAAAGC
AGAGAAAACGACCGCGGCATGGATAGGCCCGGTGACCGTTTGGTCGAGGA
ATCACGCGAGACTCTCGCTGCTAAGCTAGCGACGGCGTTGGTGAAGGTTA
GTACTAACGCCTTCGCCGTGTCGACGCTTCGTGGAACGGAGCCCGCAGTT
GGTAGCGTACAATCAATAAACCACACACGGGTGGCCGTTGCGCTCTACTG
CACGGCGGCGATGTTAAACCATTCCTGTGTCCCCAATGCCCTAGCCACGT
TCGACGGAGGGGAGATACGAATCGTCGCTACGCGTGATATAAAGACGGGG
GAGCCTGTGAGCATTTCCTACGGACCGTCGGCATCGAAGGCAAGTCCTGC
TTACCACGCGGCGTTTAGTGTTAGTACTAACGCCTTCGCCGTGTCGACGC
TTCGTGGAACGGAGCCCGCAGTTGGTAGCGTACAATCAATAAACCACACA
CGGGTGGCCGTTGCGCTCTACTGCACGGCGGCGATGTTAAACCATTCCTG
TGTCCCCAATGCCCTAGCCACGTTCGACGGAGGGGAGATACGAATCGTCG
CTACGCGTGATATAAAGACGGGGGAGCCTGTGAGCATTTCCTACGGACCG
TCGGCATCGAAGGCAAGTCCTGCTTACCACGCGGCGTTTAGTGTTTCGTT
GGCTTCCCAACGGCGTTCATCCCTTCGAAGCGCCTACTTCTTCCGTTGCG
GGTGCGCCGCGTGCGACCCCCCAAAAGGTAACGTGGGTAGGACTAAGACT
CACCCCGGAAGCTCGAATATTTGGCCCGGAGCCACGGCGCAATCCCATAT
CACTGAGTTTGGATGTACAGAGGCTCGGTGCCATGGGACGCTCAACGTTG
GGATGTCTCCGACGCAGTCGCCATCGTATGAAAAAGAGGTGGAAGGGCAA
AGGTTGCCGGCCGCACAAATCTCAGAGCTCCCGTCCTCGCAATCTAGTAA
GTGCCTGTTCCTTTGGTGTAACCGCTGTGGAGCTCGCTTGTCCCAGCGTT
CGACAGAAGTGCTGCTGGAGGAGGACGAAGACGACCGACGCCTTTGGGCG
GATGTATTGTTGGCGGTAGCTCGCTTAGAAGACCAATCCCGCATGGAGGA
TGGCTTAGATGAAACTAGACGCACATGTAGGCAGCAGAAATGTCTGAAGA
CGTCTGCGCCTTCAGCAGTATCATTGAGCGAGGCTGTGGCTAACTCGGCG
ACCGCGGCCAAGGATCTTGTAGTTCAACGAGTTCAGTGGCGTGACCGTCG
ACTGTCTCCTGCTTCAATGAGGCGGGCGACTGCGCACGATGTGCACGCGC
GTCTGCTTGCCATGGAAGGGAACTTCTCGAGGGCTGCCGATGCCTGTGCG
GTAGCGTTGAAAGTGCTCGCGCGGAGGTTCGCGCCGGAGGAACCGGAACT
GGGCGTCGAGTATCTTAAATTGGCTGAGCTATGCTTCAACGCGGGTCTCT
TGGAGCGATGCTTGGCGGCCTGTCAACGCGCGAGGGTTTCGCTGGACGTG
TGCCTACCGTCAAGTGACGAGCAGCTCGCGGCGTTAAGCAAAATGCAGGC
CTTGTGTGCGGCCCAACTGCGCCTTTCGGGGATATAGGTTTCGTTGGCTT
CCCAACGGCGTTCATCCCTTCGAAGCGCCTACTTCTTCCGTTGCGGGTGC
GCCGCGTGCGACCCCCCAAAAGGTAACGTGGGTAGGACTAAGACTCACCC
CGGAAGCTCGAATATTTGGCCCGGAGCCACGGCGCAATCCCATATCACTG
AGTTTGGATGTACAGAGGCTCGGTGCCATGGGACGCTCAACGTTGGGATG
TCTCCGACGCAGTCGCCATCGTATGAAAAAGAGGTGGAAGGGCAAAGGTT
GCCGGCCGCACAAATCTCAGAGCTCCCGTCCTCGCAATCTAGTAAGTGCC
TGTTCCTTTGGTGTAACCGCTGTGGAGCTCGCTTGTCCCAGCGTTCGACA
GAAGTGCTGCTGGAGGAGGACGAAGACGACCGACGCCTTTGGGCGGATGT
ATTGTTGGCGGTAGCTCGCTTAGAAGACCAATCCCGCATGGAGGATGGCT
TAGATGAAACTAGACGCACATGTAGGCAGCAGAAATGTCTGAAGACGTCT
GCGCCTTCAGCAGTATCATTGAGCGAGGCTGTGGCTAACTCGGCGACCGC
GGCCAAGGATCTTGTAGTTCAACGAGTTCAGTGGCGTGACCGTCGACTGT
CTCCTGCTTCAATGAGGCGGGCGACTGCGCACGATGTGCACGCGCGTCTG
CTTGCCATGGAAGGGAACTTCTCGAGGGCTGCCGATGCCTGTGCGGTAGC
GTTGAAAGTGCTCGCGCGGAGGTTCGCGCCGGAGGAACCGGAACTGGGCG
TCGAGTATCTTAAATTGGCTGAGCTATGCTTCAACGCGGGTCTCTTGGAG
CGATGCTTGGCGGCCTGTCAACGCGCGAGGGTTTCGCTGGACGTGTGCCT
ACCGTCAAGTGACGAGCAGCTCGCGGCGTTAAGCAAAATGCAGGCCTTGT
GTGCGGCCCAACTGCGCCTTTCGGGGATATAG