mRNA_H-elongata_contig53636.12718.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53636.12718.1
Unique NamemRNA_H-elongata_contig53636.12718.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53636.12718.1 vs. uniprot
Match: A0A835YIM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.820e-21
Identity = 45/80 (56.25%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    4 LTKKPVCAPGTCVDTVYGNGVLVAFRPRDDIHVVRLWRPRGTGSALGYLERSALLGKLPAVPGMRVVTSDGHGVAVRLSR 243
            L   PV APGTCV T  G GVLV +R  DD+H VRLWRPRGTGSAL YL R+++L  LPA PG+  +T  G G  +   R
Sbjct:    9 LVAAPVTAPGTCVLTAMGPGVLVKYREADDMHCVRLWRPRGTGSALAYLNRASILAPLPASPGLEAITPLGKGTVLSYRR 88
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BLAST of mRNA_H-elongata_contig53636.12718.1 vs. uniprot
Match: D8LTI7_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 3.240e-17
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   31 GTCVDTVYGNGVLVAFRPRDDIHVVRLWRPRGTGSALGYLERSALLGKLPAVPGMRVVTSDGHGVAV 231
            GTCV+T  G GVLV  R  DD+HVVRLWR RG GSA  YL   A+L +LPA  G+RV T +G GV V
Sbjct:    6 GTCVETTLGTGVLVEIRQEDDVHVVRLWRSRGAGSAKAYLHPGAVLRELPAAVGVRVKTPEGDGVVV 72
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BLAST of mRNA_H-elongata_contig53636.12718.1 vs. uniprot
Match: A0A7S2GSF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GSF8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.640e-14
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   13 KPVCAPGTCVDTVYGNGVLVAFRPRDDIHVVRLWRPRGTGSALGYLERSALLGKLPAVPGMRVVTSDGHG 222
            +P+  PGT V T YG GV++++R  DD+H VRLW PRG GSA  +L RSA++  + A  G  V T+ G G
Sbjct:   19 RPLGPPGTPVLTYYGTGVILSYRAEDDVHHVRLWAPRGGGSAAAFLTRSAIIRTIAAAVGFIVKTTMGRG 88
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BLAST of mRNA_H-elongata_contig53636.12718.1 vs. uniprot
Match: A0A7S2UG56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG56_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.770e-12
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    7 TKKPVCAPGTCVDTVYGNGVLVAFRPRDDIHVVR-LWRPRGTGSALGYLERSALLGKLPAVPGMRVVTSDGHGV 225
            +K PV   G+CV T YG G+LVA+R  DD HV+R LW+PRG+GSA+ Y+ R A+   + A  G  V T  G GV
Sbjct:  380 SKHPV---GSCVATSYGIGILVAWRVEDDCHVIRSLWKPRGSGSAIAYMNRDAIHDVVEAAVGFDVETKLGKGV 450
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BLAST of mRNA_H-elongata_contig53636.12718.1 vs. uniprot
Match: A0A7S2A1I7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A1I7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.500e-12
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    7 TKKPVCAPGTCVDTVYGNGVLVAFRPRDDIHVVR-LWRPRGTGSALGYLERSALLGKLPAVPGMRVVTSDGHGVAV 231
            +K P+   G+CV T +G GVLV +R +DD HVVR LW+ RGTGSAL YL RSA+   + A  G  V TS G+G  V
Sbjct:   56 SKFPI---GSCVATSFGIGVLVGWRFQDDCHVVRSLWQKRGTGSALAYLNRSAIHCIMEAPVGFHVETSLGYGFVV 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53636.12718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YIM8_9STRA2.820e-2156.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LTI7_ECTSI3.240e-1759.70Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2GSF8_9STRA5.640e-1448.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2UG56_9STRA1.770e-1250.00Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2A1I7_9STRA4.500e-1252.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53636contigH-elongata_contig53636:923..1165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2.8e-14
Seed eggNOG ortholog2880.D8LTI7
EggNOG OGs28JPJ@1,2QS2W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930874.5497978-CDS-H-elongata_contig53636:922..11651622930874.5497978-CDS-H-elongata_contig53636:922..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53636 923..1165 -
1691679606.8777466-CDS-H-elongata_contig53636:922..11651691679606.8777466-CDS-H-elongata_contig53636:922..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53636 923..1165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53636.12718.1prot_H-elongata_contig53636.12718.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53636 923..1165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53636.12718.1

>prot_H-elongata_contig53636.12718.1 ID=prot_H-elongata_contig53636.12718.1|Name=mRNA_H-elongata_contig53636.12718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MLTKKPVCAPGTCVDTVYGNGVLVAFRPRDDIHVVRLWRPRGTGSALGYL
ERSALLGKLPAVPGMRVVTSDGHGVAVRLSR
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mRNA from alignment at H-elongata_contig53636:923..1165-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53636.12718.1 ID=mRNA_H-elongata_contig53636.12718.1|Name=mRNA_H-elongata_contig53636.12718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig53636:923..1165- (Himanthalia elongata Himel1 dioecious)
ATGTTAACGAAGAAGCCAGTCTGTGCACCTGGGACCTGCGTCGACACGGT
ATACGGTAACGGCGTTCTGGTCGCGTTCCGGCCGAGGGACGATATCCACG
TCGTTCGGCTGTGGCGGCCCAGGGGTACGGGATCAGCACTTGGCTACCTC
GAACGCTCCGCCCTGCTGGGAAAGCTCCCAGCAGTTCCTGGAATGCGCGT
GGTTACCTCCGACGGCCACGGCGTAGCCGTTCGCTTGTCCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig53636:923..1165-

>mRNA_H-elongata_contig53636.12718.1 ID=mRNA_H-elongata_contig53636.12718.1|Name=mRNA_H-elongata_contig53636.12718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig53636:923..1165- (Himanthalia elongata Himel1 dioecious)
ATGTTAACGAAGAAGCCAGTCTGTGCACCTGGGACCTGCGTCGACACGGT
ATACGGTAACGGCGTTCTGGTCGCGTTCCGGCCGAGGGACGATATCCACG
TCGTTCGGCTGTGGCGGCCCAGGGGTACGGGATCAGCACTTGGCTACCTC
GAACGCTCCGCCCTGCTGGGAAAGCTCCCAGCAGTTCCTGGAATGCGCGT
GGTTACCTCCGACGGCCACGGCGTAGCCGTTCGCTTGTCCAGGATGTTAA
CGAAGAAGCCAGTCTGTGCACCTGGGACCTGCGTCGACACGGTATACGGT
AACGGCGTTCTGGTCGCGTTCCGGCCGAGGGACGATATCCACGTCGTTCG
GCTGTGGCGGCCCAGGGGTACGGGATCAGCACTTGGCTACCTCGAACGCT
CCGCCCTGCTGGGAAAGCTCCCAGCAGTTCCTGGAATGCGCGTGGTTACC
TCCGACGGCCACGGCGTAGCCGTTCGCTTGTCCAGG
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