mRNA_H-elongata_contig53601.12716.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: D7G7Q4_ECTSI (Dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q4_ECTSI) HSP 1 Score: 431 bits (1108), Expect = 2.670e-146 Identity = 211/292 (72.26%), Postives = 245/292 (83.90%), Query Frame = 2
Query: 2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASIKGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRE 877
AFR+LVRRHGC L +TQMLH+ +FAP+NA KFR++RFDGVD+ EDRPLI QFCGN+P+T+V+AARHVE DAVDLNLGCPQKIAKKGNYGA+LL NP LCE IVA MSRELSVPVTVKIRA D+++DTLDL RRLE AGAQ+LTVHGRTV KT QG A+W II KVK + IPVVANGG+ET ADAERLLE TGAD+VMSSEGLLE+P+LFD L PM++L+G E+ +RIL EY+EL KR+P P+ SIKGHLFK+LYRLLECHHDLR RL HY+ DA AD +V E
Sbjct: 108 AFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDRESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAADWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLIPMEELQGLEVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHE 399
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE) HSP 1 Score: 410 bits (1054), Expect = 8.160e-129 Identity = 210/323 (65.02%), Postives = 241/323 (74.61%), Query Frame = 2
Query: 2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEEL---------------------------------VYRILLLAVEYVELAKRFPTPVASIKGHLFKILYRLLECHHDLRGRLAHYEADATVADAVV 871
AFR+LVRRHGC L +TQMLH+ +FAP+NA KFR++RFDGVD+ EDRPLI QFCGN+P+T+V+AARHVE DAVDLNLGCPQKIAKKGNYGA+LL NP LCE IVA MSRELSVPVTVKIRA DKD+DTLDL RRLE AGAQ+LTVHGRTV KT QG ANW II KVK IPVVANGG+ET ADAERLLE TGAD+VMSSEGLLE+P+LFD L P+++L+G E+ +RIL EY+EL K +P P+ SIKGHLFK+LYRLLECHHDLR RL HY DA AD ++
Sbjct: 108 AFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKDSDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVAGIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDRDLIPIEELQGVEVRRVSSFSCYSARRTPRMFFTCLTINAGLPGPQVAHRILSFTTEYMELVKLYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYHCDAMEADVIM 430
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A836CKE0_9STRA (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE0_9STRA) HSP 1 Score: 319 bits (817), Expect = 1.930e-104 Identity = 166/278 (59.71%), Postives = 206/278 (74.10%), Query Frame = 2
Query: 2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVAS--IKGHLFKILYRLLECHHDLRGRL 829
AFR L RRHGCDL +TQMLH+ +F+ A KFR G D EDRPLIAQFCGNDPE LV+AAR+VE V+A DLNLGCPQ+IAKKGNYGA+LL LCE+++ M+ +L+ PVTVKIR L +T+ L RLE AG Q++TVHGRTVR AKT G A+W+II +VK AL IPVVANGG+ET ADAER L TGAD++MSSE LLEDP+LFD +L + ++ G L R L LA EY++L + +P + + ++ HLFK+L+RLL CH DLRGRL
Sbjct: 22 AFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 299
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A7S2C8F7_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8F7_9STRA) HSP 1 Score: 281 bits (720), Expect = 6.570e-88 Identity = 170/369 (46.07%), Postives = 214/369 (57.99%), Query Frame = 2
Query: 2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGV---DEA----EDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEE-----------------------LVYRILLLAVEYVELAKRFPTP--VASIKGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLR------------ISQRRWYRRH 976
AFR LVRRHG DL FTQMLH+ FA ++R+ FDG D++ EDRPLIAQFCGNDP T+V+AA +++ VDA+DLNLGCPQKIAKKG YGAFLLS PVL IV M+ L VP+TVKIR L +T+ L+ AGA M+TVHGRTV+Q K A+W+++ V+ AL IPVVANGG+ET +DA R L TGAD VMSSE LLE+P LF L G E + R L EY+ L+ FP + + KGH FK+LYRLLE H D+R RL A ++D + L RY + P+ +P +LR ++ + WYRRH
Sbjct: 79 AFRLLVRRHGADLAFTQMLHAKNFA--TVPRYREDNFDGFLRDDQSTYAMEDRPLIAQFCGNDPGTVVEAASYIQDHVDAIDLNLGCPQKIAKKGRYGAFLLSEPVLVRSIVERMATSLDVPITVKIRMLPTKEETVQFACMLQDAGAAMVTVHGRTVKQNKNLSERADWSVVRAVREALTIPVVANGGIETTSDALRCLVETGADMVMSSEALLENPGLFQQNTDHSQDLVGSEGGALNGGTSRSEMDYSEWCEAQLVAARQLSYMREYIALSTLFPARDVIGTTKGHAFKMLYRLLEVHTDVRERLVRMRNLADLSD-ITDTLAARY------RLPVEASPDELRGFRCDDQSTPLHVAAKTWYRRH 438
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A7S3UVI5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI5_HETAK) HSP 1 Score: 258 bits (659), Expect = 4.240e-79 Identity = 151/313 (48.24%), Postives = 198/313 (63.26%), Query Frame = 2
Query: 2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAE--DRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSV---PVTVKIRALDKDADTLDLVR------RLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFD---DTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASIKGHLFKILYRLLECHHDLRGRLAHYEADATVADAVV--RELCERY 892
AFR L R++G L +TQMLHS F+ + FR+ FDG+D E DRPLIAQF GN PET+V+AA+++E VDA+DLN GCPQ+IA+KGNYGAFLL N LC +V+ ++ + P TVK+R L DL R R+ A GAQ+L +HGRTV Q+KT G+A+W +I VK+ + IPV+ANGG+E D +R L+ TGAD+VMSSE LLE+P LFD + + L G +R L LA+EY+EL R PT + K H+FK LYRL E DLR + ++ A D VV E+ RY
Sbjct: 8 AFRLLCRKYGTTLAYTQMLHSSHFSTPSNSFFRETNFDGLDPEETIDRPLIAQFNGNVPETVVKAAKYIEHQVDAIDLNFGCPQQIARKGNYGAFLLENEDLCAALVSALASRPAASTCPPTVKMRCLPGPDGRPDLERTVAFAQRMAAEGAQLLCLHGRTVEQSKTNAGSADWEVIRLVKQEVDIPVIANGGIENFDDVQRCLQITGADAVMSSEALLENPMLFDPARSSAAALAALDGAGWAHRQLGLALEYLELVARHPTHYGTFKSHVFKFLYRLFEEQKDLRAKFGD-KSTAMFEDMVVIILEMASRY 319
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: W7TKF8_9STRA (Dihydrouridine synthase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKF8_9STRA) HSP 1 Score: 261 bits (666), Expect = 7.340e-79 Identity = 162/345 (46.96%), Postives = 215/345 (62.32%), Query Frame = 2
Query: 2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGV----DEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLF---DDTLTPMDQLRGEE---------LVYRILLLAVEYVELAKRF--PTPVASIKGHLFKILYRLLE--CHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLRISQRRWYRRH 976
AFR LVRR+G DL +TQM H+ FA N + +R++ +DG+ + A DRPLIAQF G+ + LV+AA ++ VDAVDLNLGCPQ+IAK+G+YGA+LL L ++++ M + L+VPVT KIR L + DTL+LV+ +E AG +LT+HGRT Q K + G A+WA I K+K A IPVVANGGVET DA TGAD+VMSSEGLLE+PSLF L ++ R + L +R L A EY+ELAK+F VA++KGHLFK+LY +LE ++DLR +L + VV+EL E + D L +S WYRRH
Sbjct: 143 AFRTLVRRYGIDLAYTQMFHATNFA--NVKVYREENWDGLGNAPENAFDRPLIAQFAGDSADELVRAASLIQHEVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRLLSHMVKHLAVPVTTKIRLLPNERDTLELVKAIEDAGVALLTIHGRTREQNKMSVGKADWAAINKIKCACHIPVVANGGVETYEDALACQSVTGADAVMSSEGLLENPSLFLPGSSLLVGGERSRMQSCEREVEAFALAHRQLNFAQEYLELAKKFWPREGVATVKGHLFKMLYHILEVPANYDLREKLGAKGNGIKQYEQVVQELLETRYSSIDVAIVLTKGAIVSPVS---WYRRH 482
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: K3WW65_GLOUD (tRNA-dihydrouridine synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW65_GLOUD) HSP 1 Score: 252 bits (643), Expect = 4.540e-77 Identity = 152/336 (45.24%), Postives = 206/336 (61.31%), Query Frame = 2
Query: 2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASI-KGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLRI--SQRRWYRRHWPDRGQQK 1000
AFR L R+HG +L +T M HS FA A +R++ F+ +DRPLI QFCGNDP T++ AA+HVEG DAVDLNLGCPQ IA+KG YG+FL+ + +IV T+S LS+PVTVKIR + +TL+ L+AAG ML VHGRT KT NW II ++K L IPV+ANGG+E D ER LEAT AD VM+SE +LE+P++ +T + G++ + L LA +Y+E A++FP I + HLFKIL++ L H DLR LA + A + D +++EL E + P G + ++ WYRRH +GQ+K
Sbjct: 42 AFRMLTRKHGAELCYTPMFHSRLFAESPA--YREKMFE--QHIQDRPLIVQFCGNDPATVLAAAKHVEGHCDAVDLNLGCPQGIARKGRYGSFLMKEKDVVREIVQTLSDNLSIPVTVKIRMFPDEQETLEFCDMLQAAGCDMLVVHGRTKEMNKTLVREVNWDIIRQIKERLTIPVIANGGIEFPEDIERCLEATKADGVMTSEAILENPAILAET----NNTPGKDTSF--LELAKQYMEFAQQFPPANEKIVRAHLFKILFQDLRVHTDLRDLLAAVKTRAQMDD-ILKEL-EGRLRKEELDAPAGEKQWSKVVYAAETSWYRRH--RKGQEK 363
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A3R7YT01_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7YT01_9STRA) HSP 1 Score: 251 bits (640), Expect = 1.070e-76 Identity = 153/334 (45.81%), Postives = 205/334 (61.38%), Query Frame = 2
Query: 2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASI-KGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLRISQRRWYRRHWPDRGQQK 1000
AFR L R G D +T MLHS F + ++R++ F+ +DRPLI QFCGNDP+T++ AA+ VE DAVDLNLGCPQ IA+KG+YG+FL+ + + IV T+SR L++PVTVKIR + D +TL+ LE AG +LTVHGRT KT NW II ++K L+IPV+ANGG+ET D R LEATG D VMSSEGLLE+P+LF D+ + G++ + L LA +Y+E A +P I + HLFK+L++ L H DLR LA ++ + D +V EL R D K T + + WYRRH +GQ+K
Sbjct: 39 AFRMLCRTLGADCCYTPMLHSRLFT--ESVEYREKMFEH--HLQDRPLIVQFCGNDPKTVLMAAKMVESHCDAVDLNLGCPQGIARKGHYGSFLMHDKNTVKSIVETLSRGLTIPVTVKIRVFNDDNETLEFAEMLEKAGCDLLTVHGRTKEMNKTAVQEVNWDIIRRIKERLSIPVIANGGLETHEDIARCLEATGCDGVMSSEGLLENPALFADS----NNKPGQDTSF--LQLARQYLEYATLYPPANDKIVRAHLFKMLFQDLRVHSDLRDALAAAKSQKEMVD-IVDELAVRLKKAEDDKATSEIKKTTYAM-ETSWYRRH--RQGQEK 358
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: D0NNQ3_PHYIT (tRNA-dihydrouridine synthase n=25 Tax=Phytophthora TaxID=4783 RepID=D0NNQ3_PHYIT) HSP 1 Score: 248 bits (634), Expect = 8.230e-76 Identity = 150/334 (44.91%), Postives = 205/334 (61.38%), Query Frame = 2
Query: 2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASI-KGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLRISQRRWYRRHWPDRGQQK 1000
AFR L R+ G D +T MLHS FA + ++R++ F+ +DRPL+ QFCGNDP+T++ AA+ VEG DAVDLNLGCPQ IA+KG+YG+FL+ + + V T+S L++PVTVKIR D +TL+ L+ AG +LTVHGRT KT NW II ++K L IPV+ANGG+ET D R LEATG D VMSSEGLLE+P+LF DT + GE+ + L LA +Y+E A +P I + HLFKIL++ L H DLR LA ++ + + +V EL R + +++ ++ WYRRH +GQ+K
Sbjct: 38 AFRMLCRKLGADCCYTPMLHSRLFA--ESAEYREKMFEH--HIQDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKTLSAGLNIPVTVKIRVFPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVNWDIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFADT----NNTPGEDTSF--LELARQYLECATLYPPASDKIVRAHLFKILFQDLRVHSDLRDALAAAKSQQEMVE-IVDELAVR-LKEAESENAGPEIKKVAYAAKASWYRRH--RQGQEK 357
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A5D6XL89_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL89_9STRA) HSP 1 Score: 248 bits (632), Expect = 1.300e-75 Identity = 150/328 (45.73%), Postives = 194/328 (59.15%), Query Frame = 2
Query: 2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASI-KGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRELCERYF--FDPDTKTPLGGAPTDLRISQRRWYRRH 976
AFR L RRHG +L +T M HS FA A +R++ F+ DRPLI QFCGNDP+T++ AA+ VEG DAVDLNLGCPQ IA+KG YG+FL+ + IV T+S L+VPVTVKIR + +TL+ L+AAG +L VHGRT KT A+W I+ ++K L IPVVANGG+E D +R L+AT AD VMSSE +LE+P+LF L Y + LA EY+ LA+ FP I + HLFK+L++ L H DLR LA + +A A+VRE+ R P + + A T WYRRH
Sbjct: 29 AFRMLCRRHGAELCYTPMFHSRLFAESPA--YREKMFE--QHVHDRPLIVQFCGNDPQTMLAAAKLVEGHCDAVDLNLGCPQGIARKGRYGSFLMQDKAAVRAIVETLSAHLAVPVTVKIRVFPDEQETLEFCDMLQAAGCDLLVVHGRTKEMNKTAVRAADWGIVQRIKARLTIPVVANGGIEAPGDVQRCLDATHADGVMSSEAILENPALFSRRDRTTTATATPSLSY--VALATEYLALAEDFPPASDKIVRAHLFKLLFQDLRVHTDLRDALAAAKTRVHMA-AIVREVETRAADPSHPQHRPVVYAAATS-------WYRRH 342 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53601.12716.1 >prot_H-elongata_contig53601.12716.1 ID=prot_H-elongata_contig53601.12716.1|Name=mRNA_H-elongata_contig53601.12716.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp MLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVback to top mRNA from alignment at H-elongata_contig53601:282..3153+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53601.12716.1 ID=mRNA_H-elongata_contig53601.12716.1|Name=mRNA_H-elongata_contig53601.12716.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2872bp|location=Sequence derived from alignment at H-elongata_contig53601:282..3153+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53601:282..3153+ >mRNA_H-elongata_contig53601.12716.1 ID=mRNA_H-elongata_contig53601.12716.1|Name=mRNA_H-elongata_contig53601.12716.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig53601:282..3153+ (Himanthalia elongata Himel1 dioecious)back to top |