mRNA_H-elongata_contig53600.12715.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 8.560e-23 Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = -1
Query: 58 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRGSSIVRALPVSQAA 300
QSLQDRTT TVDE I EVKR F+ Q P+TL KVW + QA+L++I+LAKGDNT LPHL+K + G SI + LP+S A
Sbjct: 52 QSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESLQAILQEIILAKGDNTIKLPHLKKDKAANSGRSIPKELPLSAEA 132
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.520e-19 Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = -1
Query: 40 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRGSSIVRALPVSQAAWNAAHS 300
QSLQDR T TVDE I EVKR F+ Q P+T KVW + QA+L QI+LAKG+NTF LPHL+K + G SI + LP+S A A +
Sbjct: 204 QSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAIL-QIILAKGNNTFKLPHLKKDNAANSGRSIPKELPLSAEASTAVRA 289
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: UPI000E705B9B (uncharacterized protein LOC113279201 n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E705B9B) HSP 1 Score: 56.2 bits (134), Expect = 4.870e-7 Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = -1
Query: 82 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRGSSIVR 300
QS+Q R +N +DELI V++ ++ EP + KV+ T+Q + ++M A+G+ F LPH+ K R G+ +R
Sbjct: 388 QSIQHRQRMNNIDELIVAVEKAYNDMEPRIINKVFLTHQLCMLEVMKARGEIRFVLPHIGKDKLEREGNLPMR 460
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A392MRR2_9FABA (Transposase n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MRR2_9FABA) HSP 1 Score: 53.9 bits (128), Expect = 2.390e-6 Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = -1
Query: 97 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRG 300
QS+Q++ T T+DEL++ V+ F+ E T +++ T Q + +IM KG N + +PH++K R+G
Sbjct: 167 QSIQEKITTKTIDELVQAVETAFEIFEVDTSNRIFLTLQTCMVEIMKRKGSNQYDIPHIKKTVLQRQG 234
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: UPI00104066C4 (uncharacterized protein LOC114370211 n=1 Tax=Glycine soja TaxID=3848 RepID=UPI00104066C4) HSP 1 Score: 53.9 bits (128), Expect = 2.640e-6 Identity = 27/68 (39.71%), Postives = 38/68 (55.88%), Query Frame = -1
Query: 97 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRG 300
QSLQ + N+VDELIE VK+ FD + VW T Q + +I+ +G N + +P + KA R G
Sbjct: 195 QSLQQKVRANSVDELIEAVKKSFDEYPTKKVEYVWLTLQLCMREILKVEGSNRYKIPDVNKARLDREG 262
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A6H5JRZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ6_9PHAE) HSP 1 Score: 51.6 bits (122), Expect = 8.680e-6 Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = -1
Query: 169 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQ 300
QSLQDRTT T+D+L+ EV+R F AQ P + +VWTT Q+V +
Sbjct: 135 QSLQDRTTPTTIDQLVAEVERAFWAQSPGAVDRVWTTLQSVFRR 178
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A0A9BDH3_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9BDH3_ARUDO) HSP 1 Score: 50.4 bits (119), Expect = 2.440e-5 Identity = 23/68 (33.82%), Postives = 41/68 (60.29%), Query Frame = -1
Query: 97 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRG 300
QS+Q +TT T +EL+ V + F+ + + +++ T L +IM G+N++ +PH+RKA R+G
Sbjct: 92 QSIQQKTTCKTKEELVAAVDKAFEEYQVSKANRIFLTLHGCLNEIMRIGGNNSYNIPHIRKAMLERQG 159
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A6A4ZR54_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZR54_9STRA) HSP 1 Score: 49.3 bits (116), Expect = 5.940e-5 Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = -1
Query: 97 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRG 300
QSLQDR + T+DEL+ FD L + + QA L + M+ GDN + LPH+ K + R+G
Sbjct: 25 QSLQDRKSTRTIDELVGHETSSFDEYPHERLNHTFMSLQACLIETMIHFGDNAYKLPHMSKEKHERKG 92
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A6A4Z322_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z322_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 7.090e-5 Identity = 23/86 (26.74%), Postives = 47/86 (54.65%), Query Frame = -1
Query: 43 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRGSSIVRALPVSQAAWNAAH 300
QSLQ NT E+++ + +D +P +L + + T Q L ++++A GDN++ +PH++K + G + ++ S+ + H
Sbjct: 356 QSLQQTHHSNTYQEIVDATNKAWDDVDPWSLERNFLTLQCCLREVIMAAGDNSYKVPHMKKEALKKSGK-LPESVMCSEDVFETGH 440 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53600.12715.1 >prot_H-elongata_contig53600.12715.1 ID=prot_H-elongata_contig53600.12715.1|Name=mRNA_H-elongata_contig53600.12715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp MRNAPPPPLPLSSRVSRIPRRLADRQRTHDRRTSAAVRRLAQVGQGERVVback to top mRNA from alignment at H-elongata_contig53600:2639..2938+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53600.12715.1 ID=mRNA_H-elongata_contig53600.12715.1|Name=mRNA_H-elongata_contig53600.12715.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig53600:2639..2938+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53600:2639..2938+ >mRNA_H-elongata_contig53600.12715.1 ID=mRNA_H-elongata_contig53600.12715.1|Name=mRNA_H-elongata_contig53600.12715.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig53600:2639..2938+ (Himanthalia elongata Himel1 dioecious)back to top |