mRNA_H-elongata_contig53579.12712.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE) HSP 1 Score: 151 bits (382), Expect = 1.480e-40 Identity = 92/216 (42.59%), Postives = 124/216 (57.41%), Query Frame = 1
Query: 1 LVVATWNVRTMSERGTNGPGHAEDLLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHCSGHCHGDGGKPGILGVGLAVRESIARALGPDGIVPEYISARLLKVRVIFK-HRAVTIFIVGYAPTETAATCHKSKF*KELRSTAAEVPASDHLILMMDANARTGGRGEGGGLGFVRVLGPYGRDTLNDNGSRLLACAAGHKLSIVNTFFSTPKRG 645
L VATWNVRT++ G NG G A +L AA+ + + +QETRR GRT A AG+ V C G G G+ GVG+AV+ES+ + E+I L+ +R + HR F+ YAPTE + K F +L S +P+ + + ++MDANARTG R +GG RV+G YGRD LNDNG LL A G++L++ NTFF T K G
Sbjct: 113 LRVATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAA--AGFRVFCCGTETG-----GVHGVGIAVKESLCKT---STFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTEPSTADSKRVFWGKLDSLVRRIPSKECVHVLMDANARTGDRLDGGD---GRVIGMYGRDELNDNGMLLLNFATGNRLALTNTFFETRKGG 315
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 156 bits (395), Expect = 2.520e-40 Identity = 93/222 (41.89%), Postives = 129/222 (58.11%), Query Frame = 1
Query: 1 LVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHCSGHCHGDGGKPGILGVGLAVRESIARALGPDGIVPEYISARLLKVRVIFKHRAVTIFIVGYAPTETAATCH------KSKF*KELRSTAAEVPASDHLILMMDANARTGGRGEGGGLGFVRVLGPYGRDTLNDNGSRLLACAAGHKLSIVNTFFSTPKRG 645
L T+NVRT++ G N GH ++ A +CD I +QETRR G+ I GY + SG G K G+ GVG+A++E++ ++G G E IS RL+KVR+ F+VGYAPTETA K F L + EV + DHL+++MDANARTG R +G +++G YGRD +N+NG RLL AA ++LS++NT+F TPK G
Sbjct: 90 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGG 307
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 154 bits (389), Expect = 3.620e-40 Identity = 91/222 (40.99%), Postives = 129/222 (58.11%), Query Frame = 1
Query: 1 LVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHCSGHCHGDGGKPGILGVGLAVRESIARALGPDGIVPEYISARLLKVRVIFKHRAVTIFIVGYAPTETAATCH------KSKF*KELRSTAAEVPASDHLILMMDANARTGGRGEGGGLGFVRVLGPYGRDTLNDNGSRLLACAAGHKLSIVNTFFSTPKRG 645
L T+NVRT++ G N GH ++ + CD I +QETRR G+ +I GY + SG G K G+ GVG+A++E++ ++G +G E IS RL+KVR+ F+VGYAPTET T K F L + EV + DHL+++MDANARTG R +G +++G YGRD +N+NG RLL A+ ++LS+ NT+F TPK G
Sbjct: 175 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGG 392
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 150 bits (378), Expect = 2.520e-39 Identity = 89/222 (40.09%), Postives = 127/222 (57.21%), Query Frame = 1
Query: 1 LVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHCSGHCHGDGGKPGILGVGLAVRESIARALGPDGIVPEYISARLLKVRVIFKHRAVTIFIVGYAPTETAATCH------KSKF*KELRSTAAEVPASDHLILMMDANARTGGRGEGGGLGFVRVLGPYGRDTLNDNGSRLLACAAGHKLSIVNTFFSTPKRG 645
L T+NVRT++ G N GH ++ + CD I +QETRR G+ +I GY + SG G K G+ GVG+ ++E++ ++G +G E I RL+KVR+ F+VGYAPTET T K F L + EV + DHL+++MDANARTG R +G +++G YGRD +N+NG RLL A+ ++LS+ NT+F TPK G
Sbjct: 81 LSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGG 298
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 152 bits (383), Expect = 3.840e-39 Identity = 90/222 (40.54%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 1 LVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHCSGHCHGDGGKPGILGVGLAVRESIARALGPDGIVPEYISARLLKVRVIFKHRAVTIFIVGYAPTETAATCH------KSKF*KELRSTAAEVPASDHLILMMDANARTGGRGEGGGLGFVRVLGPYGRDTLNDNGSRLLACAAGHKLSIVNTFFSTPKRG 645
L T+NVRT++ G N GH ++ + CD I +QETRR G+ +I GY + SG G K G+ GVG+A++E++ ++G +G E IS RL+KVR+ F+VGYAPTET T K F L + EV + DHL+++MDANARTG R +G +++G YGRD +N+NG RLL A+ ++LS+ NT+ TPK G
Sbjct: 86 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPKGG 303
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 152 bits (385), Expect = 5.550e-39 Identity = 90/220 (40.91%), Postives = 129/220 (58.64%), Query Frame = 1
Query: 1 LVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHCSGHCHGDGGKPGILGVGLAVRESIARALGPDGIVPEYISARLLKVRVIFKHRAVTIFIVGYAPTETAATCH------KSKF*KELRSTAAEVPASDHLILMMDANARTGGRGEGGGLGFVRVLGPYGRDTLNDNGSRLLACAAGHKLSIVNTFFSTPK 639
L T+NVRT++ G N GH ++ + CD I +QETRR+G+ +I GY + SG G K G+ GVG+A++E++ ++G +G E IS RL+KVR+ H I +VGYAPTET T K F L + EV + DHL+++MDANARTG R +G +++G YGRD +N+NG R L A+ ++LS+ NT+F TPK
Sbjct: 133 LSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERRLGLASDNQLSLTNTYFRTPK 348
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 146 bits (369), Expect = 6.980e-39 Identity = 87/219 (39.73%), Postives = 126/219 (57.53%), Query Frame = 1
Query: 1 LVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHCSGHCHGDGGKPGILGVGLAVRESIARALGPDGIVPEYISARLLKVRVIFKHRAVTIFIVGYAPTETAATCH------KSKF*KELRSTAAEVPASDHLILMMDANARTGGRGEGGGLGFVRVLGPYGRDTLNDNGSRLLACAAGHKLSIVNTFFSTP 636
L T+NVRT++ G N GH ++ + CD I +QETRR+G+ +I GY + SG G K G+ GVG+A++E++ ++G +G E I RL+KVR+ F+V YAPTET T K F L + EV + DHL+++MDANARTG R +G +++G YGRD +N+NG RLL A+ ++LS+ NT+F TP
Sbjct: 148 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDG--CCDAKIMGVYGRDIMNNNGERLLGLASNNQLSLTNTYFRTP 362
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Match: A0A6H5KA69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA69_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.930e-38 Identity = 88/223 (39.46%), Postives = 129/223 (57.85%), Query Frame = 1
Query: 1 LVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHCSGHCHGDGGKPGILGVGLAVRESIARALGPDGIVPEYISARLLKVRVIFKHRAVTIFIVGYAPTETAATCH------KSKF*KELRSTAAEVPASDHLILMMDANARTGGRGEGGGLGFVRVLGPYGRDTLNDNGSRLLACAAGHKLSIVNTFFSTPKRGR 648
L T+NVRT++ G N GH ++ + CD + + E+RR+G+ +I GY + SG G K G+ GVG+A++E++ ++G +G E IS RL+KVR+ F+VGYAPTET T K F L + EV + DHL+++MDANART R +G +++G YGRD +N+NG RLL A+ ++LS+ NT+F TPK GR
Sbjct: 125 LPFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVMELHESRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFRASLDAAIREVHSCDHLVVLMDANARTCRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGR 343
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 149 bits (377), Expect = 6.360e-38 Identity = 89/222 (40.09%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 1 LVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHCSGHCHGDGGKPGILGVGLAVRESIARALGPDGIVPEYISARLLKVRVIFKHRAVTIFIVGYAPTETAATCH------KSKF*KELRSTAAEVPASDHLILMMDANARTGGRGEGGGLGFVRVLGPYGRDTLNDNGSRLLACAAGHKLSIVNTFFSTPKRG 645
L T+NV T++ G N GH ++ + CD I +QETRR+G+ +I GY + SG G K G+ GVG+A++E++ ++G +G E IS RL+KVR+ F+V YAPTET T K F L + EV + DHL+++MDANARTG R +G +++G YGRD +N+NG RLL A+ ++LS+ NT+F TPK G
Sbjct: 657 LSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGG 874
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 140 bits (352), Expect = 8.710e-38 Identity = 81/195 (41.54%), Postives = 114/195 (58.46%), Query Frame = 1
Query: 73 LLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHCSGHCHGDGGKPGILGVGLAVRESIARALGPDGIVPEYISARLLKVRVIFKHRAVTIFIVGYAPTETAATCH------KSKF*KELRSTAAEVPASDHLILMMDANARTGGRGEGGGLGFVRVLGPYGRDTLNDNGSRLLACAAGHKLSIVNTFFSTPK 639
++ A +CD I +QETRR G+ I GY + SG G K G+ GVG+A++E++ ++G G E IS RL+KVR+ F+VGYAPTETA K F L + EV + DHL+++MDANARTG R +G +++G YGRD +N+NG RLL AA ++LS++NT+ TPK
Sbjct: 3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYIRTPK 193 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53579.12712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53579.12712.1 >prot_H-elongata_contig53579.12712.1 ID=prot_H-elongata_contig53579.12712.1|Name=mRNA_H-elongata_contig53579.12712.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp MSERGTNGPGHAEDLLMFAAKYECDFIAIQETRRDGRTTIQAPSAGYAVHback to top mRNA from alignment at H-elongata_contig53579:1920..2573+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53579.12712.1 ID=mRNA_H-elongata_contig53579.12712.1|Name=mRNA_H-elongata_contig53579.12712.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at H-elongata_contig53579:1920..2573+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53579:1920..2573+ >mRNA_H-elongata_contig53579.12712.1 ID=mRNA_H-elongata_contig53579.12712.1|Name=mRNA_H-elongata_contig53579.12712.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig53579:1920..2573+ (Himanthalia elongata Himel1 dioecious)back to top |