prot_H-elongata_contig53507.12696.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig53507.12696.1
Unique Nameprot_H-elongata_contig53507.12696.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length152
Homology
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BLAST of mRNA_H-elongata_contig53507.12696.1 vs. uniprot
Match: D8LS06_ECTSI (Calponin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS06_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.050e-23
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = 0 
Query:    2 VSDLRPPATLSARARKMCPEEVVKSPRALAYDTDPLGHPTRSPTFRTPEASNSIGSG--VFFHSAWDTEIYSIRNAKTRFSRPLSPGSRIKTLSPQGLWAAG 101
            ++DL PPATLSARAR+MCP E+V SPRAL ++ DP+GHPTRSPT R    SN+   G      SAW T+ Y  + A    S   +  SR  TLSP G+W  G
Sbjct:  342 ITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHPTRSPTLRAAWESNATNGGRAAAGRSAWGTDAYPAKRAAKATSNLSATSSRGMTLSPAGIWGTG 443
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BLAST of mRNA_H-elongata_contig53507.12696.1 vs. uniprot
Match: A0A6H5JBJ6_9PHAE (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.930e-21
Identity = 50/102 (49.02%), Postives = 62/102 (60.78%), Query Frame = 0 
Query:    2 VSDLRPPATLSARARKMCPEEVVKSPRALAYDTDPLGHPTRSPTFRTPEASNSIGSG--VFFHSAWDTEIYSIRNAKTRFSRPLSPGSRIKTLSPQGLWAAG 101
            ++DL PPATLSARAR+MCP E+V SPRAL ++ DP+GHP RSPT R    SN+   G      SAW T+ Y  +      S   +  SR  TLSP G+W  G
Sbjct:  340 ITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHPPRSPTLRAAWESNATNGGRAAAGRSAWGTDAYPAKRTAKITSNLSATSSRGMTLSPAGIWGTG 441
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53507.12696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS06_ECTSI4.050e-2350.98Calponin domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBJ6_9PHAE1.930e-2149.02Calponin-homology (CH) domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53507contigH-elongata_contig53507:493..1692 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53507.12696.1mRNA_H-elongata_contig53507.12696.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig53507 440..2786 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig53507.12696.1 ID=prot_H-elongata_contig53507.12696.1|Name=mRNA_H-elongata_contig53507.12696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MVSDLRPPATLSARARKMCPEEVVKSPRALAYDTDPLGHPTRSPTFRTPE
ASNSIGSGVFFHSAWDTEIYSIRNAKTRFSRPLSPGSRIKTLSPQGLWAA
GNAKYTAKSAYLTDAYAHGHSPAEDGEGMTTDVAAARAGYILPEAHGEHR
S*
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