mRNA_H-elongata_contig116091.1269.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116091.1269.1
Unique NamemRNA_H-elongata_contig116091.1269.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116091.1269.1 vs. uniprot
Match: A0A6H5KJH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH4_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.320e-22
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:   13 QVSSLSALVSLKMRKNQLTSVPPEVFLLECLALLDLTGNVIRELPEEQLGAAVLLKSLLLSGNRLSSLPSTMGNL 237
            QVS+LS LVSLK+RKN+L++VPPE+F LE L+LLDLTGN IRELPEE L AAV LK LLLSGNRLS LPS++G+L
Sbjct:   26 QVSNLSVLVSLKLRKNRLSAVPPELFSLESLSLLDLTGNAIRELPEEGLCAAVALKGLLLSGNRLSRLPSSVGSL 100
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BLAST of mRNA_H-elongata_contig116091.1269.1 vs. uniprot
Match: D8LFI7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI7_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 6.130e-22
Identity = 128/191 (67.02%), Postives = 140/191 (73.30%), Query Frame = 1 
Query:   16 VSSLSALVSLKMRKNQLTSVPPEVFLLECLALLDLTGNVIRELPEEQLGAAVLLKSLLLSGNRLSSLPSTMGNLEGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DFPSLPQTDRLAQVFIGFNLLTDLDVTSLLRVS 585
            VS+LS LVSLK+RKN+L+SVPPE+F LE L+LLDLTGN IRELPEE LGAAV LK LLLSGNRLS LPS++       XXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     + P LP+  RLAQVF+GFNLLT LD  +LL VS
Sbjct:  133 VSNLSVLVSLKLRKNRLSSVPPELFSLESLSLLDLTGNAIRELPEEGLGAAVALKGLLLSGNRLSRLPSSVXXXXXXXXXXXXXXXXXXXXXSIDGLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGLARLGALTSLDLRENKLTEVPPLPEGGRLAQVFLGFNLLTSLDGAALLGVS 323
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BLAST of mRNA_H-elongata_contig116091.1269.1 vs. uniprot
Match: A0A3F2RWM2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWM2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.850e-6
Identity = 29/74 (39.19%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:   10 DQVSSLSALVSLKMRKNQLTSVPPEVFLLECLALLDLTGNVIRELPEEQLGAAVLLKSLLLSGNRLSSLPSTMG 231
            D++++L+++ S+K+ +N L ++P   F L+ L  LDL+ N + +   E+ GA   LK L+LSGN+LS LP+++G
Sbjct:   28 DEIATLTSVTSIKLCQNALQTLPEGFFELQTLTYLDLSHNQLDQNLSERFGALTSLKELVLSGNKLSCLPNSIG 101
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BLAST of mRNA_H-elongata_contig116091.1269.1 vs. uniprot
Match: A0A6G0PK55_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6G0PK55_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.300e-6
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:   10 DQVSSLSALVSLKMRKNQLTSVPPEVFLLECLALLDLTGNVIRELPEEQLGAAVLLKSLLLSGNRLSSLPSTM 228
            D+++ L+++ S+K+ KN L  +P   F L+ L  LDL+ N + +   E  GA V LK L+LSGN+LS LP ++
Sbjct:   86 DEIAGLTSVTSIKLTKNALQVLPEGFFELQALTYLDLSHNQLEQDLSESFGALVGLKELVLSGNKLSRLPDSI 158
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BLAST of mRNA_H-elongata_contig116091.1269.1 vs. uniprot
Match: A0A329S1P8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S1P8_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.880e-6
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   10 DQVSSLSALVSLKMRKNQLTSVPPEVFLLECLALLDLTGNVIRELPEEQLGAAVLLKSLLLSGNRLSSLPSTMGNLE 240
            D++  L+++ S+K+ KN L  +P   F L+ L  LDL+ N + +   E  GA   LK L+LSGN+LS LP+++  LE
Sbjct:   85 DEIGGLTSVTSIKLTKNALQVLPERFFELQTLTYLDLSYNRLEQDLSESFGALAGLKELVLSGNKLSRLPNSITLLE 161
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BLAST of mRNA_H-elongata_contig116091.1269.1 vs. uniprot
Match: A0A418CIW4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CIW4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-5
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   16 VSSLSALVSLKMRKNQLTSVPPEVFLLECLALLDLTGNVIRELPEEQLGAAVLLKSLLLSGNRLSSLPST 225
            +  LS L+S KM +N+L  VP E+F L  LA LDL+ N +     + LG    LK L+LSGN+L+S+P++
Sbjct:   93 IQGLSGLLSFKMCQNKLVEVPVELFSLTSLAYLDLSNNCLSGAFPDPLGRLNKLKELVLSGNKLTSVPAS 162
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BLAST of mRNA_H-elongata_contig116091.1269.1 vs. uniprot
Match: A0A833WIV5_PHYIN (Leucine rich repeat n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WIV5_PHYIN)

HSP 1 Score: 55.1 bits (131), Expect = 1.770e-5
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   10 DQVSSLSALVSLKMRKNQLTSVPPEVFLLECLALLDLTGNVIRELPEEQLGAAVLLKSLLLSGNRLSSLPSTMGNLE 240
            D++  L+++ S+K+ KN L  +P   F L  L  LDL+ N + +   E  GA + LK L LSGN+LS LP+++  LE
Sbjct:   13 DEIGGLTSVTSIKLTKNALQVLPEGFFELHALTYLDLSHNELEQNLSESFGALIGLKELGLSGNKLSHLPNSITLLE 89
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BLAST of mRNA_H-elongata_contig116091.1269.1 vs. uniprot
Match: W4GPG4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GPG4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.130e-5
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   16 VSSLSALVSLKMRKNQLTSVPPEVFLLECLALLDLTGNVIRELPEEQLGAAVLLKSLLLSGNRLSSLPST 225
            +  LS L+S KM +N+L  VP E+F L  LA LDL+ N +     + LG    LK L+LSGN+L+S+P++
Sbjct:   93 IQGLSGLLSFKMCQNKLVDVPVELFSLTSLAYLDLSNNCLGGAFPDPLGRLNNLKELVLSGNKLTSVPAS 162
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BLAST of mRNA_H-elongata_contig116091.1269.1 vs. uniprot
Match: W4GRJ5_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRJ5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.300e-5
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   16 VSSLSALVSLKMRKNQLTSVPPEVFLLECLALLDLTGNVIRELPEEQLGAAVLLKSLLLSGNRLSSLPST 225
            +  LS L+S KM +N+L  VP E+F L  LA LDL+ N +     + LG    LK L+LSGN+L+S+P++
Sbjct:   93 IQGLSGLLSFKMCQNKLVDVPVELFSLTSLAYLDLSNNCLGGAFPDPLGRLNNLKELVLSGNKLTSVPAS 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116091.1269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KJH4_9PHAE2.320e-2274.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFI7_ECTSI6.130e-2267.02Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A3F2RWM2_9STRA3.850e-639.19Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A6G0PK55_9STRA7.300e-641.10Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A329S1P8_9STRA9.880e-640.26Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A418CIW4_9STRA1.330e-544.29Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A833WIV5_PHYIN1.770e-540.26Leucine rich repeat n=2 Tax=Phytophthora infestans... [more]
W4GPG4_9STRA3.130e-544.29Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W4GRJ5_9STRA3.300e-544.29Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116091contigH-elongata_contig116091:818..2073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D8LFI7
EggNOG free text desc.Leucine-rich repeats, outliers
EggNOG OGsCOG4886@1,KOG0472@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-04_002040.1
Exons3
Model size585
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116091.1269.1prot_H-elongata_contig116091.1269.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116091 818..2073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.523464-CDS-H-elongata_contig116091:817..10131622929674.523464-CDS-H-elongata_contig116091:817..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116091 818..1013 +
1691679114.8518245-CDS-H-elongata_contig116091:817..10131691679114.8518245-CDS-H-elongata_contig116091:817..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116091 818..1013 +
1622929674.539541-CDS-H-elongata_contig116091:1445..17741622929674.539541-CDS-H-elongata_contig116091:1445..1774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116091 1446..1774 +
1691679114.8607864-CDS-H-elongata_contig116091:1445..17741691679114.8607864-CDS-H-elongata_contig116091:1445..1774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116091 1446..1774 +
1622929674.555183-CDS-H-elongata_contig116091:2013..20731622929674.555183-CDS-H-elongata_contig116091:2013..2073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116091 2014..2073 +
1691679114.8718455-CDS-H-elongata_contig116091:2013..20731691679114.8718455-CDS-H-elongata_contig116091:2013..2073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116091 2014..2073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116091.1269.1

>prot_H-elongata_contig116091.1269.1 ID=prot_H-elongata_contig116091.1269.1|Name=mRNA_H-elongata_contig116091.1269.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MRLDQVSSLSALVSLKMRKNQLTSVPPEVFLLECLALLDLTGNVIRELPE
EQLGAAVLLKSLLLSGNRLSSLPSTMGNLEGLETLELSDNNLRFLPESIG
RLRRLTALTASNNALNRLPESLGGLSAVALLDLSRNAVERIPQGLARLES
LTSLDLRENKLEDFPSLPQTDRLAQVFIGFNLLTDLDVTSLLRVS
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mRNA from alignment at H-elongata_contig116091:818..2073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116091.1269.1 ID=mRNA_H-elongata_contig116091.1269.1|Name=mRNA_H-elongata_contig116091.1269.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1256bp|location=Sequence derived from alignment at H-elongata_contig116091:818..2073+ (Himanthalia elongata Himel1 dioecious)
ATGCGTCTTGATCAGGTGTCAAGCCTGTCGGCTCTAGTGTCTCTCAAGAT
GCGGAAGAACCAGCTCACGTCGGTCCCGCCCGAGGTGTTCTTGCTTGAGT
GCCTTGCGCTGCTCGATCTCACGGGGAACGTCATCCGTGAGCTCCCGGAG
GAACAGCTCGGAGCGGCCGTTTTGCTCAAGAGCCTGCTGCTTTCTGGTGA
GGGGAAACCATGCAAGGGTTTCGGGCACCAGGCTGCCTTTGAGTACTGCG
CAGTCTTTTGGAGAAGAATGGTTGGGGGGGAGGCATTTCTTGGTAGGGGG
TTAATACTGTTTCGATATAGAGGATCGTGACAGGGCAGCAAAAGCAGCAA
CTTTTCAAGGTGTAGCGCTGATTTTTGATTTGGATTTTGGATGGGGGAAA
AAAAAGTACAGTAGCGAAAGATTGAGCAGTTTTTTATCGTCACGTCCTTC
AAAATTCGCGCGAAGTGGTTACGCGCTCAGTAGGAATTCTTTTTTTGTTT
GAATTTTCCCTTTCCGCTCTTTTTTTTACAAAAACATATCCGCTATAATA
AATAGTATGAACTTACTCAAATCCTCCAAACACCTATGCCCCCTCCCCCG
CCACCAAACATCCCCGCGATACCGACAGGAAACCGCCTATCAAGTCTACC
GTCCACTATGGGCAACCTAGAAGGACTCGAAACCCTGGAGCTCTCCGATA
ACAATCTACGCTTTCTTCCGGAGTCCATCGGGCGGCTCAGGCGCCTCACC
GCCCTGACGGCCAGCAACAACGCCCTAAACCGCCTGCCCGAGTCCCTCGG
AGGGCTGTCGGCCGTCGCGCTGCTGGACCTCAGCCGAAACGCCGTCGAGA
GGATCCCACAAGGGCTGGCCCGTCTCGAGAGTCTGACGTCGCTCGACTTA
CGAGAGAACAAGCTCGAGGATTTCCCCTCGCTGCCTCAGACCGATCGCCT
GGCCCAGGTGCACGAATTGACAAGACGCGGAGTTGGCCTTGACCTCTCCA
AGTTTTTAGGGGATCCCGGGTGACCAGAGCCTGTTCGTCTTGGGTTTAAC
ATAAAACGAGTATTTTCCTGAGCGAGTCCACGGGGTAGAGGCCTTCGCCC
CCCACAGTGTGTCGTAGGATACGCGCCTCAAGGCCCTTTTTTTTCTCTCT
CCCTTTTTTCTTCTTTTTCTTCTTTTTTTTTACCCCTGTCTGGCAGGTTT
TCATCGGCTTCAATCTGCTCACCGATCTCGACGTGACATCCCTCTTACGC
GTTTCG
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Coding sequence (CDS) from alignment at H-elongata_contig116091:818..2073+

>mRNA_H-elongata_contig116091.1269.1 ID=mRNA_H-elongata_contig116091.1269.1|Name=mRNA_H-elongata_contig116091.1269.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig116091:818..2073+ (Himanthalia elongata Himel1 dioecious)
ATGCGTCTTGATCAGGTGTCAAGCCTGTCGGCTCTAGTGTCTCTCAAGAT
GCGGAAGAACCAGCTCACGTCGGTCCCGCCCGAGGTGTTCTTGCTTGAGT
GCCTTGCGCTGCTCGATCTCACGGGGAACGTCATCCGTGAGCTCCCGGAG
GAACAGCTCGGAGCGGCCGTTTTGCTCAAGAGCCTGCTGCTTTCTGATGC
GTCTTGATCAGGTGTCAAGCCTGTCGGCTCTAGTGTCTCTCAAGATGCGG
AAGAACCAGCTCACGTCGGTCCCGCCCGAGGTGTTCTTGCTTGAGTGCCT
TGCGCTGCTCGATCTCACGGGGAACGTCATCCGTGAGCTCCCGGAGGAAC
AGCTCGGAGCGGCCGTTTTGCTCAAGAGCCTGCTGCTTTCTGGAAACCGC
CTATCAAGTCTACCGTCCACTATGGGCAACCTAGAAGGACTCGAAACCCT
GGAGCTCTCCGATAACAATCTACGCTTTCTTCCGGAGTCCATCGGGCGGC
TCAGGCGCCTCACCGCCCTGACGGCCAGCAACAACGCCCTAAACCGCCTG
CCCGAGTCCCTCGGAGGGCTGTCGGCCGTCGCGCTGCTGGACCTCAGCCG
AAACGCCGTCGAGAGGATCCCACAAGGGCTGGCCCGTCTCGAGAGTCTGA
CGTCGCTCGACTTACGAGAGAACAAGCTCGAGGATTTCCCCTCGCTGCCT
CAGACCGATCGCCTGGCCCAGGAAACCGCCTATCAAGTCTACCGTCCACT
ATGGGCAACCTAGAAGGACTCGAAACCCTGGAGCTCTCCGATAACAATCT
ACGCTTTCTTCCGGAGTCCATCGGGCGGCTCAGGCGCCTCACCGCCCTGA
CGGCCAGCAACAACGCCCTAAACCGCCTGCCCGAGTCCCTCGGAGGGCTG
TCGGCCGTCGCGCTGCTGGACCTCAGCCGAAACGCCGTCGAGAGGATCCC
ACAAGGGCTGGCCCGTCTCGAGAGTCTGACGTCGCTCGACTTACGAGAGA
ACAAGCTCGAGGATTTCCCCTCGCTGCCTCAGACCGATCGCCTGGCCCAG
GTTTTCATCGGCTTCAATCTGCTCACCGATCTCGACGTGACATCCCTCTT
ACGCGTTTCGGTTTTCATCGGCTTCAATCTGCTCACCGATCTCGACGTGA
CATCCCTCTTACGCGTTTCG
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