mRNA_H-elongata_contig53428.12684.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53428.12684.1
Unique NamemRNA_H-elongata_contig53428.12684.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53428.12684.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 7.150e-22
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  124 SSFDSDGEYDSLRSVLGKVHLLKYFGHFRRREIRLECLEHLSEKDLVEIGLPMGARKRLLVETYGISSATREP 342
            S  DSD  YDSLR VLGKV L KYF  FRRRE+RLE L+HL+E DL E+G+P+G RKRLLVE +GI++  R P
Sbjct: 3057 SGSDSDAAYDSLRGVLGKVSLSKYFKEFRRREVRLEDLQHLTEGDLTEMGMPVGPRKRLLVEVHGITTPVRTP 3129
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BLAST of mRNA_H-elongata_contig53428.12684.1 vs. uniprot
Match: A0A7N2KZ33_QUELO (SAM domain-containing protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2KZ33_QUELO)

HSP 1 Score: 54.7 bits (130), Expect = 2.390e-6
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:  103 TPAGSPGS-SFDSDGEYDSLRSVLGKVHLLKYFGHFRRREIRLECLEHLSEKDLVEIGLPMGARKRLLVETY 315
            TP G  G  SF S  E  ++ S+L  + L KY  HFR  E+ +  L+ + +KDL ++G+PMG RK++L+  +
Sbjct:  212 TPIGGIGQKSFHSVEESHTVPSLLQSLGLGKYSIHFRAEEVDMTALKQMGDKDLKDMGIPMGPRKKILLALW 283
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BLAST of mRNA_H-elongata_contig53428.12684.1 vs. uniprot
Match: A0A7S3YCN2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCN2_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 3.710e-6
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  145 EYDSLRSVLGKVHLLKYFGHFRRREIRLECLEHLSEKDLVEIGLPMGARKRL 300
            +Y  LR+ L  + LLK++   R  EI LE L  +SE++L E+GLP+GAR+R+
Sbjct:   19 DYRPLRAALEGLRLLKHYPTLRENEITLEVLGAISEEELAELGLPLGARRRI 70
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BLAST of mRNA_H-elongata_contig53428.12684.1 vs. uniprot
Match: A0A1S3FT60_DIPOR (phospholipase DDHD2 n=2 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3FT60_DIPOR)

HSP 1 Score: 52.4 bits (124), Expect = 1.920e-5
Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  112 GSPGSSFDSDGEYDSLRSVLGKVHLLKYFGHFRRREIRLECLEHLSEKDLVEIGLPMGARKRLL 303
            GSP +  D  G+  +L   L ++HL +YF  F + ++  E L   ++KDL E+G+P+G RK+LL
Sbjct:  330 GSPSTVMDQ-GDTRTLEEDLKRLHLSEYFSIFEKEKVDKEALALCTDKDLQEMGIPLGPRKKLL 392
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BLAST of mRNA_H-elongata_contig53428.12684.1 vs. uniprot
Match: UPI001CFC38D7 (uncharacterized protein LOC123198101 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFC38D7)

HSP 1 Score: 51.6 bits (122), Expect = 2.850e-5
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   58 LSELEEAAQLKTPFETPAGSPGSSFDSDGEYDSLRSVLGKVHLLKYFGHFRRREIRLECLEHLSEKDLVEIGLPMGARKRLLV 306
            L    +AA ++ P     G    S     E+ ++  VL  + L KY   FR  E+ +  L+ +S+KDL E+G+PMG RK++L+
Sbjct:  182 LGASRQAAHMRYPVAPSGGFMQKSALMGVEHLTVAGVLESLGLTKYEITFRAEEVDMPALKQMSDKDLKELGIPMGPRKKILL 264
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BLAST of mRNA_H-elongata_contig53428.12684.1 vs. uniprot
Match: A0A0V0HVQ0_SOLCH (SAM domain-containing protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HVQ0_SOLCH)

HSP 1 Score: 50.8 bits (120), Expect = 6.030e-5
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  124 SSFDSDGEYDSLRSVLGKVHLLKYFGHFRRREIRLECLEHLSEKDLVEIGLPMGARKRLLVETYGISSATREP 342
            SS   D    ++ S+L  + L KY  HF+  E+ +  L+ + ++DL E+G+PMG RK++L+    + S TR P
Sbjct:  247 SSXXXDQPPVTVASLLNSLGLGKYAIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILL---AMLSQTRRP 316
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BLAST of mRNA_H-elongata_contig53428.12684.1 vs. uniprot
Match: A0A238KXN3_9RHOB (Adenylate cyclase 1 n=29 Tax=Ruegeria arenilitoris TaxID=1173585 RepID=A0A238KXN3_9RHOB)

HSP 1 Score: 50.8 bits (120), Expect = 6.910e-5
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:  157 LRSVLGKVHLLKYFGHFRRREIRLECLEHLSEKDLVEIGLPMGARKRLLVETYGISSAT 333
            + + L K+ L KY   F   E+ L  L HLSE DL+++GLP+G R+RLL  T   +  T
Sbjct:    4 IAAFLEKLGLSKYAPAFAAAEVALSDLVHLSEHDLIDLGLPLGPRRRLLAATARFAQDT 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53428.12684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L4T0_9PHAE7.150e-2264.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7N2KZ33_QUELO2.390e-638.89SAM domain-containing protein n=3 Tax=Fagaceae Tax... [more]
A0A7S3YCN2_HETAK3.710e-646.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1S3FT60_DIPOR1.920e-539.06phospholipase DDHD2 n=2 Tax=Heteromyidae TaxID=100... [more]
UPI001CFC38D72.850e-533.73uncharacterized protein LOC123198101 n=1 Tax=Mangi... [more]
A0A0V0HVQ0_SOLCH6.030e-535.62SAM domain-containing protein n=1 Tax=Solanum chac... [more]
A0A238KXN3_9RHOB6.910e-542.37Adenylate cyclase 1 n=29 Tax=Ruegeria arenilitoris... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53428contigH-elongata_contig53428:2520..3377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size350
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53428.12684.1prot_H-elongata_contig53428.12684.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53428 2520..3377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.9230776-CDS-H-elongata_contig53428:2519..26001622930870.9230776-CDS-H-elongata_contig53428:2519..2600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53428 2520..2600 -
1691679605.591805-CDS-H-elongata_contig53428:2519..26001691679605.591805-CDS-H-elongata_contig53428:2519..2600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53428 2520..2600 -
1622930870.953776-CDS-H-elongata_contig53428:2872..30611622930870.953776-CDS-H-elongata_contig53428:2872..3061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53428 2873..3061 -
1691679605.611653-CDS-H-elongata_contig53428:2872..30611691679605.611653-CDS-H-elongata_contig53428:2872..3061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53428 2873..3061 -
1622930870.968639-CDS-H-elongata_contig53428:3299..33771622930870.968639-CDS-H-elongata_contig53428:3299..3377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53428 3300..3377 -
1691679605.621935-CDS-H-elongata_contig53428:3299..33771691679605.621935-CDS-H-elongata_contig53428:3299..3377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53428 3300..3377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53428.12684.1

>prot_H-elongata_contig53428.12684.1 ID=prot_H-elongata_contig53428.12684.1|Name=mRNA_H-elongata_contig53428.12684.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
DGPLAFSRPGSAEEKLKPRLSELEEAAQLKTPFETPAGSPGSSFDSDGEY
DSLRSVLGKVHLLKYFGHFRRREIRLECLEHLSEKDLVEIGLPMGARKRL
LVETYGISSATREPFQ
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mRNA from alignment at H-elongata_contig53428:2520..3377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53428.12684.1 ID=mRNA_H-elongata_contig53428.12684.1|Name=mRNA_H-elongata_contig53428.12684.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig53428:2520..3377- (Himanthalia elongata Himel1 dioecious)
GACGGGCCGCTAGCTTTTTCGCGGCCTGGGTCAGCAGAAGAAAAGCTTAA
ACCAAGACTCTCCGAGCTCGAAGAAGCGGTAAGTGGGCGACCTTGCCCGT
GTGGCATGGGCCAGCAAGGGTGGTGAGGTATCCTTTGGTGGCGTCATTCG
CTACTTTTTTTTTAATGTGGTCTGCGTCATATTTTTTACCCTTCTCACGT
TTCTCGCGAATTTCCACGGAAAACAAGCAAAGGGCACTGAACTCATTATC
TTGAACCTGTGTTTCCGTTTCGCTTTTTCTTTCAACCGGGCTTCGAAACT
ACGCGATCCCGGCAAGGCTCAGCTCAAAACTCCCTTCGAGACGCCGGCAG
GTTCCCCTGGGTCGAGTTTTGACTCGGACGGGGAGTACGATAGCCTGCGC
AGTGTGCTCGGCAAGGTTCACCTTCTGAAGTATTTTGGGCACTTCAGGCG
GAGAGAGATTCGGCTGGAGTGCCTGGAACACCTAAGCGAGAAAGATCTAG
TTGAGGTGGGTACTTATCAACGGTGGTATTATATGCTATTATATGTACCA
AGTGATGGCCGCACGTGTCATGTGTCAAGTGATTGTCGCGGATTTGATAA
AGTTGGATCACCGCGTAGTGGCTTACTCGTAGCGGCAAGATCCGTTTTCT
TGGCTTGGAGTGATCCAGGAAAACTATCAGCACGATATCGTTATTCTATG
CCCGCGATGAATGATAGAACTGGCGTTAAAGGTTCCCTCTCAGTCGTTAT
ACACGCCCTACTAACCATTATTGTCAGATCGGTCTACCCATGGGCGCTAG
AAAGCGACTGTTAGTGGAAACTTACGGGATATCGTCCGCGACGAGGGAAC
CGTTTCAA
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Coding sequence (CDS) from alignment at H-elongata_contig53428:2520..3377-

>mRNA_H-elongata_contig53428.12684.1 ID=mRNA_H-elongata_contig53428.12684.1|Name=mRNA_H-elongata_contig53428.12684.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig53428:2520..3377- (Himanthalia elongata Himel1 dioecious)
GACGGGCCGCTAGCTTTTTCGCGGCCTGGGTCAGCAGAAGAAAAGCTTAA
ACCAAGACTCTCCGAGCTCGAAGAAGCGGACGGGCCGCTAGCTTTTTCGC
GGCCTGGGTCAGCAGAAGAAAAGCTTAAACCAAGACTCTCCGAGCTCGAA
GAAGCGGCTCAGCTCAAAACTCCCTTCGAGACGCCGGCAGGTTCCCCTGG
GTCGAGTTTTGACTCGGACGGGGAGTACGATAGCCTGCGCAGTGTGCTCG
GCAAGGTTCACCTTCTGAAGTATTTTGGGCACTTCAGGCGGAGAGAGATT
CGGCTGGAGTGCCTGGAACACCTAAGCGAGAAAGATCTAGTTGAGGCTCA
GCTCAAAACTCCCTTCGAGACGCCGGCAGGTTCCCCTGGGTCGAGTTTTG
ACTCGGACGGGGAGTACGATAGCCTGCGCAGTGTGCTCGGCAAGGTTCAC
CTTCTGAAGTATTTTGGGCACTTCAGGCGGAGAGAGATTCGGCTGGAGTG
CCTGGAACACCTAAGCGAGAAAGATCTAGTTGAGATCGGTCTACCCATGG
GCGCTAGAAAGCGACTGTTAGTGGAAACTTACGGGATATCGTCCGCGACG
AGGGAACCGTTTCAAATCGGTCTACCCATGGGCGCTAGAAAGCGACTGTT
AGTGGAAACTTACGGGATATCGTCCGCGACGAGGGAACCGTTTCAA
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