prot_H-elongata_contig116053.1263.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig116053.1263.1
Unique Name	prot_H-elongata_contig116053.1263.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	114

Homology

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BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.830e-19
Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = 0

Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDY-INPQKLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 113
            F+++GG ++  S+G N Y +I  DDCTR+  V F+K KS+  AA    + DY        +    TD GGEF  +F     R  I  E TPP+TP+YNGV ERAL LL + A+A
Sbjct:  198 FLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALA 311

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BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.370e-16
Identity = 46/103 (44.66%), Postives = 58/103 (56.31%), Query Frame = 0

Query:   12 SLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDY-INPQKLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 113
            S+G N Y +I  DDCTR+  V F+K KS+  AA    + DY        +    TD GGEF  +F     R  I  E TPP+TP+YNGV ERAL LL + A+A
Sbjct:    5 SIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALA 107

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BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.540e-16
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 0

Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDYINPQKLSIKCVW-TDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 113
            ++D+GG +K  S+G N Y +I  DD +R+  V F+K KS+        + DY         C+  TD GGEF  +F     R  I  E TPP TP+YNGV ERAL L+ + A+A
Sbjct:   25 YLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALA 138

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BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.180e-15
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 0

Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDYINPQ-KLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 113
            ++D+GG +K  S+G++ Y ++  DD +R+  V F+K KS+        + DY   +    +    TD+GGEF  +F     R  I  E TPP TP+YN V ERAL L+ + A+A
Sbjct:  219 YLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLITDAALA 332

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BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.660e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0

Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALF-YLIEDYINPQKLSIKCVWTDNGGEF-DTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 113
            FVD+ G  +  SLG   Y +I  DD TR+  V F+K KS+   A   YL E+  N     +  V +DNGGEF + +F R   +  I  E TP  +P+YNGV ERAL L+++ A+A
Sbjct:  737 FVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALA 851

[Close]

BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.670e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0

Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALF-YLIEDYINPQKLSIKCVWTDNGGEF-DTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 113
            FVD+ G  +  SLG   Y +I  DD TR+  V F+K KS+   A   YL E+  N     +  V +DNGGEF + +F R   +  I  E TP  +P+YNGV ERAL L+++ A+A
Sbjct:  572 FVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALA 686

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BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.670e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0

Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALF-YLIEDYINPQKLSIKCVWTDNGGEF-DTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 113
            FVD+ G  +  SLG   Y +I  DD TR+  V F+K KS+   A   YL E+  N     +  V +DNGGEF + +F R   +  I  E TP  +P+YNGV ERAL L+++ A+A
Sbjct:  585 FVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALA 699

[Close]

BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.670e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0

Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALF-YLIEDYINPQKLSIKCVWTDNGGEF-DTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 113
            FVD+ G  +  SLG   Y +I  DD TR+  V F+K KS+   A   YL E+  N     +  V +DNGGEF + +F R   +  I  E TP  +P+YNGV ERAL L+++ A+A
Sbjct:  728 FVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALA 842

[Close]

BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.600e-15
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 0

Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDY-INPQKLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELL 107
            ++D+GG +K  S+G N Y +I  DD +R+  V F+K KS+    L   + DY        +    TD GGEF  +F     R  I  E TPP TP+YNGV ERAL  L
Sbjct:  649 YLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGAL 756

[Close]

BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 8.670e-15
Identity = 47/116 (40.52%), Postives = 63/116 (54.31%), Query Frame = 0

Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDYIN---PQKLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 113
            ++D+GG +K  S+G N Y +I  DDC+R+  V F    S+        + DY     P K+ I    TD GGEF  +F     R  I  E TPP TP+YNGV ERAL L+ + A+A
Sbjct:  403 YLDLGGKMKTRSIGGNWYTLIIRDDCSRWTCVFFFNH-SDAAVGFEKSLADYRTKGVPCKVYI--ARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALA 515

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot

BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5LL52_9PHAE	1.830e-19	42.98	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KKB4_9PHAE	1.370e-16	44.66	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KAM7_9PHAE	1.540e-16	40.35	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KGJ8_9PHAE	1.180e-15	36.84	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JTI6_9PHAE	2.660e-15	41.74	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JZQ8_9PHAE	2.670e-15	41.74	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN00_9PHAE	2.670e-15	41.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KF60_9PHAE	2.670e-15	41.74	Uncharacterized protein n=12 Tax=Ectocarpus sp. CC...	[more]
A0A6H5JM30_9PHAE	3.600e-15	40.74	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JIN8_9PHAE	8.670e-15	40.52	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..114 e-value: 1.8E-15 score: 58.7
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 3..109 e-value: 7.2E-15 score: 55.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..114 score: 16.015
None	No IPR available	PANTHER	PTHR42648:SF11		coord: 12..107
IPR038965	Transposase InsF-like	PANTHER	PTHR42648	FAMILY NOT NAMED	coord: 12..107
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig116053	contig	H-elongata_contig116053:1628..1969 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig116053.1263.1	mRNA_H-elongata_contig116053.1263.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig116053 1628..1969 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig116053.1263.1 ID=prot_H-elongata_contig116053.1263.1|Name=mRNA_H-elongata_contig116053.1263.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIE
DYINPQKLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVV
ERALELLREKAIAL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR038965	InsF-like
IPR012337	RNaseH-like_sf