mRNA_H-elongata_contig52968.12621.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52968.12621.1
Unique NamemRNA_H-elongata_contig52968.12621.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52968.12621.1 vs. uniprot
Match: A0A6H5JU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU28_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 6.670e-64
Identity = 169/388 (43.56%), Postives = 210/388 (54.12%), Query Frame = 1 
Query:    1 ESVSICPLHTFQGKKVHSLLWAQDLFVPPRTLVEPCAKAGFSSV----GGASGAHPSHPNAR-----------LGRSAHAGLLRAATLPPMVNATTRDLPPLRQLQGSYSGRGARKRSTGELKRPMVLKPGAPGQPLLSSFARKFEARFYA-TRSGEPEPETD--ELQQRVGRLSTGGRRIDIACDGGSRG--IDG-RYWSAELQGLSVDGPR----------GLGCGSQ-----------GHDSYDEQGAI-DLVPEREEKFLTTIFGMVDTRDRGEVRLDEVLFHMTENAQVKSLLRQVTLWTMIKTRRWEWLEELFAAQASRTLTLSALLRYSQSLHEEKGVPRKHVRLPMALRKEDVARRDARSKRLLPADLVEGREVEALFMK 1035
            E  S  P H F+GKK H +  A+D FVPPR L EP  K G  SV     GA+GA  + P  R            G +A +G+ +A  LPP++       P    + G  +  G    S    KRP    P       +SSF RK  AR    +R  E E E    E Q R   L  G + +D   DGG +G  I G RY      G+S    +          G+ C  Q           GH  +D+ G + +LVPE EEK LT +FG++D R RGEVRLDEVLF+MTENAQVKS+L+QV LW + KTRRW W++EL  AQ  RTLTL ALL +S+SLHEE  VPRKH+RL   LR+  V R+D RSKRLLPA+ VEG EVEAL+ K
Sbjct:  283 EGSSTRPFHVFRGKKTHQVFPAKDCFVPPRHLSEPTTKHGLISVHALTAGAAGAAGACPAGREKTAGPETVDPAGANAPSGVSKAVHLPPLLETPGEGWPAAVPIAGRAAVTGEPLSSN---KRP----PSWQRPRSVSSFERKLAARRQQWSREAEEEAEERAFEEQWRTQELLLGVQGLD---DGGWQGGGIAGYRYKVGGTAGISQGSTQAGRRCHGNGGGVMCTRQRRVRTRGWRDRGHHDWDDDGKVTELVPELEEKLLTEMFGILDARHRGEVRLDEVLFYMTENAQVKSILKQVPLWMLTKTRRWAWVDELLDAQPGRTLTLPALLAFSRSLHEESHVPRKHLRLATELREGGVERKDVRSKRLLPAEFVEGAEVEALYRK 660
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BLAST of mRNA_H-elongata_contig52968.12621.1 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 1.990e-60
Identity = 165/388 (42.53%), Postives = 198/388 (51.03%), Query Frame = 1 
Query:    1 ESVSICPLHTFQGKKVHSLLWAQDLFVPPRTLVEPCAKAGFSSVGGASGAHPSHPNARLGR--------------SAHAGLLRAATLPPMVNATTRDLPPLRQLQGSYSGRGARKRSTGELKRPMVLKPGAPGQPLLSSFARKFEARFYATRSGEPEPETDEL----QQRVGRLSTGGRRIDIACDGGSRG---IDGRYWSAELQGLSVDGPR-GLGCGSQG---------------------HDSYDEQGAIDLVPEREEKFLTTIFGMVDTRDRGEVRLDEVLFHMTENAQVKSLLRQVTLWTMIKTRRWEWLEELFAAQASRTLTLSALLRYSQSLHEEKGVPRKHVRLPMALRKEDVARRDARSKRLLPADLVEGREVEALFMK 1035
            E  S  P H F GKK H +  A+D FVPPR L EP  K G  SV   +           GR              +A +G+ +A  LPP++       P      G  +  G    S    KRP    P       +SSF RK  AR     S E E E +E     Q+R   L  G + ID   DGG +G      RY   E   +S    R G  C   G                      D  D++   +LVPE EEK LT ++GM+D R RGEVRLDEVLF+MTENAQVKS+L+QV LW + KTRRW W++EL AAQ  RTLTL ALL +S+SLHEE  VPRKH+RL   L +  V R+D RSKRLLPADLVEG EVEALF K
Sbjct:  701 EGSSTRPFHVFCGKKTHQVFPARDCFVPPRHLSEPTTKHGLISVHALAAXXXXXXXCPAGREKTAGPETVDPAGANAPSGVSKAVHLPPLLETHGEGWPAAVPSAGRVAATGEPLSSN---KRP----PSWQRPRSVSSFERKLAARRQQW-SREAEEEAEERAFAEQRRTQELLLGVQGID---DGGWQGGGRAGYRYKVGETAAISPGSTRAGRRCHRNGGGVRFARQRRAXXXXXXXXXXXDWGDDEKVTELVPEVEEKLLTEMYGMLDARHRGEVRLDEVLFYMTENAQVKSILKQVPLWMLTKTRRWAWVDELLAAQPGRTLTLPALLAFSRSLHEESHVPRKHLRLATELGEGGVERKDVRSKRLLPADLVEGAEVEALFRK 1077
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52968.12621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU28_9PHAE6.670e-6443.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFK6_ECTSI1.990e-6042.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52968contigH-elongata_contig52968:703..2185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.1
Seed ortholog evalue2.5e-56
Seed eggNOG ortholog2880.D8LFK6
EggNOG OGs29WS3@1,2RXQ6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001865.1
Exons2
Model size1035
Cds size1035
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.6545696-CDS-H-elongata_contig52968:702..9871622930864.6545696-CDS-H-elongata_contig52968:702..987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52968 703..987 -
1691679603.1289346-CDS-H-elongata_contig52968:702..9871691679603.1289346-CDS-H-elongata_contig52968:702..987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52968 703..987 -
1622930864.675196-CDS-H-elongata_contig52968:1435..21851622930864.675196-CDS-H-elongata_contig52968:1435..2185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52968 1436..2185 -
1691679603.1429303-CDS-H-elongata_contig52968:1435..21851691679603.1429303-CDS-H-elongata_contig52968:1435..2185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52968 1436..2185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52968.12621.1prot_H-elongata_contig52968.12621.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52968 703..2185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52968.12621.1

>prot_H-elongata_contig52968.12621.1 ID=prot_H-elongata_contig52968.12621.1|Name=mRNA_H-elongata_contig52968.12621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=345bp
ESVSICPLHTFQGKKVHSLLWAQDLFVPPRTLVEPCAKAGFSSVGGASGA
HPSHPNARLGRSAHAGLLRAATLPPMVNATTRDLPPLRQLQGSYSGRGAR
KRSTGELKRPMVLKPGAPGQPLLSSFARKFEARFYATRSGEPEPETDELQ
QRVGRLSTGGRRIDIACDGGSRGIDGRYWSAELQGLSVDGPRGLGCGSQG
HDSYDEQGAIDLVPEREEKFLTTIFGMVDTRDRGEVRLDEVLFHMTENAQ
VKSLLRQVTLWTMIKTRRWEWLEELFAAQASRTLTLSALLRYSQSLHEEK
GVPRKHVRLPMALRKEDVARRDARSKRLLPADLVEGREVEALFMK
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mRNA from alignment at H-elongata_contig52968:703..2185-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52968.12621.1 ID=mRNA_H-elongata_contig52968.12621.1|Name=mRNA_H-elongata_contig52968.12621.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1483bp|location=Sequence derived from alignment at H-elongata_contig52968:703..2185- (Himanthalia elongata Himel1 dioecious)
GAAAGCGTATCTATCTGTCCTCTTCACACCTTCCAGGGGAAGAAAGTACA
CAGCCTGTTGTGGGCGCAAGACCTGTTCGTCCCTCCCAGAACGCTTGTTG
AGCCTTGTGCGAAAGCGGGATTCTCGTCAGTAGGTGGGGCGTCGGGAGCA
CACCCGTCTCATCCAAACGCACGCCTAGGCAGGTCCGCCCACGCCGGACT
TCTCAGGGCCGCGACCCTGCCTCCCATGGTCAACGCCACCACCAGAGATT
TACCACCCCTGCGACAACTTCAAGGCTCGTATAGCGGGCGGGGGGCTCGG
AAACGGAGCACTGGCGAATTGAAGCGACCGATGGTGTTGAAGCCAGGGGC
TCCGGGGCAACCGCTGCTGTCGTCTTTCGCGCGCAAGTTTGAAGCTCGGT
TTTATGCGACGCGGTCAGGAGAGCCTGAACCTGAGACCGATGAGCTTCAG
CAGCGCGTAGGGAGGTTGTCGACAGGCGGACGTAGGATCGACATAGCGTG
CGATGGTGGAAGTCGTGGAATAGATGGACGATATTGGTCTGCCGAATTGC
AAGGGTTGAGCGTGGACGGACCACGAGGGCTAGGGTGCGGATCACAAGGG
CACGACTCGTACGATGAGCAAGGAGCGATCGATTTGGTTCCCGAGAGGGA
GGAAAAGTTTCTCACGACAATATTCGGAATGGTGGACACCCGCGACCGGG
GCGAGGTTCGGCTAGACGAGGTCTTGTTCCACATGACAGAGAACGCCCAG
GTAAGGGAGGACCGATATATGGATTTCATTTAGGATTACCTTCGGCATGC
ATGCAAGTAAGCAAATTATGCCCGTCACACTTTGCGCCAACCTTCCAAAG
GGGGGCTTCAAAGTGTGCGTTTCGTCCCGATAATTCTAGAAAACGCGTGC
AAGATGCTGAGCGTCGGCGACATATTTGTCGATTCCAAAGTAGTGCCCAT
TTCGTGGTCAACGAACAGCCAGAGTTAAATCCCACACCCGCTGGTGCTGG
ATCACGGGAGATCTATCACTGGTTGTAGCGAAAACAAACTTCCCCGTGAA
ATGTTTCAAGCGCTTTCGGTAACCACGTATATTCCCGCGTGGTTCGTGAC
ACATTTATCGAAGCGTAACGGCAACCTCACCGCCAAACGTATCGCTACCC
GTGGCCCACTCTTGCCTCCTCCCTGCTCATTGATCACAACTTGAGAAGGT
CAAGTCCCTGTTGAGGCAGGTGACCTTGTGGACGATGATCAAGACGCGGC
GCTGGGAATGGCTCGAGGAGCTCTTCGCCGCTCAGGCAAGTCGAACGCTA
ACCCTCTCGGCGCTGTTGCGCTACAGCCAAAGCCTCCACGAGGAGAAAGG
AGTGCCGCGCAAACACGTACGGCTCCCGATGGCGCTGCGCAAGGAGGACG
TGGCTCGAAGAGATGCTCGTTCGAAGCGGCTTCTGCCGGCGGACTTGGTC
GAGGGCCGAGAGGTGGAAGCCCTGTTCATGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig52968:703..2185-

>mRNA_H-elongata_contig52968.12621.1 ID=mRNA_H-elongata_contig52968.12621.1|Name=mRNA_H-elongata_contig52968.12621.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2070bp|location=Sequence derived from alignment at H-elongata_contig52968:703..2185- (Himanthalia elongata Himel1 dioecious)
GAAAGCGTATCTATCTGTCCTCTTCACACCTTCCAGGGGAAGAAAGTACA
CAGCCTGTTGTGGGCGCAAGACCTGTTCGTCCCTCCCAGAACGCTTGTTG
AGCCTTGTGCGAAAGCGGGATTCTCGTCAGTAGGTGGGGCGTCGGGAGCA
CACCCGTCTCATCCAAACGCACGCCTAGGCAGGTCCGCCCACGCCGGACT
TCTCAGGGCCGCGACCCTGCCTCCCATGGTCAACGCCACCACCAGAGATT
TACCACCCCTGCGACAACTTCAAGGCTCGTATAGCGGGCGGGGGGCTCGG
AAACGGAGCACTGGCGAATTGAAGCGACCGATGGTGTTGAAGCCAGGGGC
TCCGGGGCAACCGCTGCTGTCGTCTTTCGCGCGCAAGTTTGAAGCTCGGT
TTTATGCGACGCGGTCAGGAGAGCCTGAACCTGAGACCGATGAGCTTCAG
CAGCGCGTAGGGAGGTTGTCGACAGGCGGACGTAGGATCGACATAGCGTG
CGATGGTGGAAGTCGTGGAATAGATGGACGATATTGGTCTGCCGAATTGC
AAGGGTTGAGCGTGGACGGACCACGAGGGCTAGGGTGCGGATCACAAGGG
CACGACTCGTACGATGAGCAAGGAGCGATCGATTTGGTTCCCGAGAGGGA
GGAAAAGTTTCTCACGACAATATTCGGAATGGTGGACACCCGCGACCGGG
GCGAGGTTCGGCTAGACGAGGTCTTGTTCCACATGACAGAGAACGCCCAG
GAAAGCGTATCTATCTGTCCTCTTCACACCTTCCAGGGGAAGAAAGTACA
CAGCCTGTTGTGGGCGCAAGACCTGTTCGTCCCTCCCAGAACGCTTGTTG
AGCCTTGTGCGAAAGCGGGATTCTCGTCAGTAGGTGGGGCGTCGGGAGCA
CACCCGTCTCATCCAAACGCACGCCTAGGCAGGTCCGCCCACGCCGGACT
TCTCAGGGCCGCGACCCTGCCTCCCATGGTCAACGCCACCACCAGAGATT
TACCACCCCTGCGACAACTTCAAGGCTCGTATAGCGGGCGGGGGGCTCGG
AAACGGAGCACTGGCGAATTGAAGCGACCGATGGTGTTGAAGCCAGGGGC
TCCGGGGCAACCGCTGCTGTCGTCTTTCGCGCGCAAGTTTGAAGCTCGGT
TTTATGCGACGCGGTCAGGAGAGCCTGAACCTGAGACCGATGAGCTTCAG
CAGCGCGTAGGGAGGTTGTCGACAGGCGGACGTAGGATCGACATAGCGTG
CGATGGTGGAAGTCGTGGAATAGATGGACGATATTGGTCTGCCGAATTGC
AAGGGTTGAGCGTGGACGGACCACGAGGGCTAGGGTGCGGATCACAAGGG
CACGACTCGTACGATGAGCAAGGAGCGATCGATTTGGTTCCCGAGAGGGA
GGAAAAGTTTCTCACGACAATATTCGGAATGGTGGACACCCGCGACCGGG
GCGAGGTTCGGCTAGACGAGGTCTTGTTCCACATGACAGAGAACGCCCAG
GTCAAGTCCCTGTTGAGGCAGGTGACCTTGTGGACGATGATCAAGACGCG
GCGCTGGGAATGGCTCGAGGAGCTCTTCGCCGCTCAGGCAAGTCGAACGC
TAACCCTCTCGGCGCTGTTGCGCTACAGCCAAAGCCTCCACGAGGAGAAA
GGAGTGCCGCGCAAACACGTACGGCTCCCGATGGCGCTGCGCAAGGAGGA
CGTGGCTCGAAGAGATGCTCGTTCGAAGCGGCTTCTGCCGGCGGACTTGG
TCGAGGGCCGAGAGGTGGAAGCCCTGTTCATGAAGGTCAAGTCCCTGTTG
AGGCAGGTGACCTTGTGGACGATGATCAAGACGCGGCGCTGGGAATGGCT
CGAGGAGCTCTTCGCCGCTCAGGCAAGTCGAACGCTAACCCTCTCGGCGC
TGTTGCGCTACAGCCAAAGCCTCCACGAGGAGAAAGGAGTGCCGCGCAAA
CACGTACGGCTCCCGATGGCGCTGCGCAAGGAGGACGTGGCTCGAAGAGA
TGCTCGTTCGAAGCGGCTTCTGCCGGCGGACTTGGTCGAGGGCCGAGAGG
TGGAAGCCCTGTTCATGAAG
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