prot_H-elongata_contig52942.12619.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52942.12619.1
Unique Nameprot_H-elongata_contig52942.12619.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length215
Homology
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BLAST of mRNA_H-elongata_contig52942.12619.1 vs. uniprot
Match: A0A2P6V7C3_9CHLO (HECT-type E3 ubiquitin transferase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V7C3_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 6.230e-10
Identity = 53/155 (34.19%), Postives = 81/155 (52.26%), Query Frame = 0 
Query:   52 ESSADLFERLKTEHPVPKRRYFSLLARVRAAVAWRGGLEARRAAVRGRIMALTALVYCHPSQDALIAYVSIQPELVQELVDLVRVRTDPLAQSTVPLDISVLAVHCLAALVHTRSGRSNLGLLARHTHVFQELGIARGQFTGLLPLLVRHGVASL 206
            ESS +L +RL  EH VP+ + ++LL ++    ++ G  EA++A +R R++A       +PS   ++A     P+LVQ+   L+R      A+  VP +I  LA+  LA           + LL R  H     GIA G+ +GLL LL+   VASL
Sbjct:  260 ESSHELLQRLVAEHGVPQDKRYALLHKINICKSF-GSAEAQQALLRRRLLAFYVAFQSNPSPTDILALFQATPDLVQQQAALLR------AEGEVPEEIQTLALRALA-----------VQLLDRSRHAAVLAGIAGGEQSGLLALLLHRSVASL 396
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BLAST of mRNA_H-elongata_contig52942.12619.1 vs. uniprot
Match: A0A1V9ZKE2_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKE2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.530e-9
Identity = 53/156 (33.97%), Postives = 75/156 (48.08%), Query Frame = 0 
Query:   53 SSADLFERLKTEHPVPKRRYFSLLARVRAAVAWRGGLEARRAAVRGRIMALTALVYCHPSQDALIAYVSIQPELVQELVDLVRVRTDPLAQSTVPLDISVLAVHCLAALVHTR--SGRSNLGLLARHTHVFQELGIARGQFTGLLPLLVRHGVASL 206
            S++ +  +L  +H VP++  F LL R+R++         R AAV  R+ AL  L Y     D +  ++   PELV E+V+L+R    P     VPL + V AVH L ALV       R    L    + V   LG+ RG   G    LVRH + +L
Sbjct:  254 SASAVLTQLVRQHNVPEKHQFKLLYRIRSSYG-AASRSTREAAVVERLHALLGLFYIFGDSDEVTTFMESNPELVGEVVELIRFDIHP----HVPLSVRVAAVHVLTALVSDGIVQSRGVRDLSRLQSSVLSALGVVRGMPHGAFLSLVRHTMGTL 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52942.12619.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2P6V7C3_9CHLO6.230e-1034.19HECT-type E3 ubiquitin transferase n=1 Tax=Micract... [more]
A0A1V9ZKE2_9STRA1.530e-933.97HECT-type E3 ubiquitin transferase n=1 Tax=Achlya ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010309E3 ubiquitin ligase, domain of unknown function DUF908PFAMPF06012DUF908coord: 46..203
e-value: 2.8E-19
score: 69.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52942contigH-elongata_contig52942:531..3544 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52942.12619.1mRNA_H-elongata_contig52942.12619.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52942 531..3544 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52942.12619.1 ID=prot_H-elongata_contig52942.12619.1|Name=mRNA_H-elongata_contig52942.12619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
GSWGGGEGGAGQESNHPSPPGGYTGSRTIFVPATPAAGEDVDAVGASGSA
SESSADLFERLKTEHPVPKRRYFSLLARVRAAVAWRGGLEARRAAVRGRI
MALTALVYCHPSQDALIAYVSIQPELVQELVDLVRVRTDPLAQSTVPLDI
SVLAVHCLAALVHTRSGRSNLGLLARHTHVFQELGIARGQFTGLLPLLVR
HGVASLFLMPEQDVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010309E3_Ub_ligase_DUF908