mRNA_H-elongata_contig116037.1262.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116037.1262.1
Unique NamemRNA_H-elongata_contig116037.1262.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Match: A0A6H5JE50_9PHAE (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE50_9PHAE)

HSP 1 Score: 374 bits (961), Expect = 1.660e-127
Identity = 180/226 (79.65%), Postives = 205/226 (90.71%), Query Frame = 1
Query:    4 ASQGRSSTAPSMVLITRNERVTSTNNRVETTIPNVNGAAVLDSWQYKVLDFLFSIPIFNDALFGYYRKKMVKKAEGMGIKWTAFLEDLERNKENLLRAQEQLTDTALQIPQYYFAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNSVHGDVLMRRDWIDTCLKYISGSEVKNIVDLGCGTGLSMFMVQSAWPNADLLGVDLSTFKLAISLTKLEKKSISVKSKV 681
            A +GRS  APSMVLITRNERVTSTNNRV+TTIPNV+GAAVL++WQ+KVLD+LFSIP+FNDALFG YRK+ VKKAEGMGIKWTAFL+DL RNKE LL  Q ++TD +L IP+YY+APIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNS+HGDVLMRRDWIDTCLKY    EVKN++DLGCGTGLSM+MVQ+AWP ADL+GVD+ST+KLAIS  KLEKK  S++SKV
Sbjct:   46 APRGRSVEAPSMVLITRNERVTSTNNRVDTTIPNVDGAAVLETWQFKVLDYLFSIPLFNDALFGVYRKQQVKKAEGMGIKWTAFLDDLNRNKERLLNIQSEMTDASLDIPEYYYAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNSIHGDVLMRRDWIDTCLKYKPPGEVKNVIDLGCGTGLSMYMVQTAWPQADLVGVDMSTYKLAISQAKLEKKPESMQSKV 271          
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Match: A0A835YXI6_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXI6_9STRA)

HSP 1 Score: 292 bits (747), Expect = 9.160e-96
Identity = 144/215 (66.98%), Postives = 170/215 (79.07%), Query Frame = 1
Query:   37 MVLITRNERVTSTNNRVETTIPNVNGAAVLDSWQYKVLDFLFSIPIFNDALFGYYRKKMVKKAEGMGIKWTAFLEDLERNKENLLRAQEQLTDTALQIPQYYFAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNSVHGDVLMRRDWIDTCLKYISGSEVKNIVDLGCGTGLSMFMVQSAWPNADLLGVDLSTFKLAISLTKLEKKSISVKSKV 681
            MVL TRNE V S N R   TIPN +G  V+D+WQ+K+LD LFS P+FN ALFG YRK+MV KAEGMGI WTAFL DL+     L   Q ++TD A+ IP YY+APIHAYADGNLCWDSAMEEDLWSKLMIAPLF+NSVHGDVLMRRDW+D   ++    +V+ I+DLGCGTGLSMFMVQS WP A L G+DLST+KLA++ TKLEKK+  V+S+V
Sbjct:    1 MVLTTRNEAVASVNTR-RVTIPNPDGGKVMDTWQFKLLDQLFSFPLFNAALFGVYRKQMVTKAEGMGIPWTAFLADLKAKMAQLRATQARMTDAAVVIPDYYYAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFDNSVHGDVLMRRDWLDAARRHTG--DVREIIDLGCGTGLSMFMVQSTWPRAHLTGIDLSTYKLALAQTKLEKKAPEVRSRV 212          
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Match: A0A7S4D7M6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7M6_HETAK)

HSP 1 Score: 211 bits (536), Expect = 1.180e-63
Identity = 98/173 (56.65%), Postives = 123/173 (71.10%), Query Frame = 1
Query:  118 AVLDSWQYKVLDFLFSIPIFNDALFGYYRKKMVKKAEGMGIKWTAFLEDLERNKENLLRAQEQLTDTALQIPQYYFAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNSVHGDVLMRRDWIDTCLKYISGSEVKNIVDLGCGTGLSMFMVQSAWPNADLLGVDLSTFKLAIS 636
            +V D+  YK+ D + ++P+F+D LFG YR + V+KAE MGI W   L++L+     L + Q  LTD  L IP YY+APIHAYADGNLCWDSA EEDLWSKLMIAPLFN    GDV MR++WID        ++ + ++D GCGTGLSM+M Q  WP AD LGVD+ST+KLAIS
Sbjct:   50 SVTDTLPYKIFDAMMNVPLFHDILFGVYRSQSVEKAEKMGIAWKQTLKELDDADAELKQMQTDLTDPKLTIPDYYYAPIHAYADGNLCWDSAKEEDLWSKLMIAPLFNGRTDGDVKMRQNWIDNVDAVFKENKPRKVMDQGCGTGLSMYMCQQQWPEADFLGVDMSTYKLAIS 222          
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Match: A0A0G4G324_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G324_9ALVE)

HSP 1 Score: 167 bits (423), Expect = 2.890e-44
Identity = 89/189 (47.09%), Postives = 117/189 (61.90%), Query Frame = 1
Query:  121 VLDSWQYKVLDFLFSIPIFNDALFGYYRKKMVKKAEGMGIKWTAFLEDLERNKENLLRAQEQLTDTALQIPQYYF-APIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNSVHGDVLMRRDWIDTCLK---------YISGSEVKNIVDLGCGTGLSMFMVQSAWPNA-DLLGVDLSTFKLAISLTKLEK 654
            V DS  ++ LD+ FS    N  + G +R +   KAE MG+ W   +   E+    L + +  LTD  L+IP+YY  APIHAY  GNLCWDSA+EEDLW+KLMIAPLF  S+ GD LMR  W+    K         +   ++ K ++DLGCGTGLS+FM   AWP A + LG+DLS FKLA++  KLE+
Sbjct:  176 VTDSLAFRFLDWCFSTWPLNRLIMGQFRSQQADKAEEMGLPWRDEIHRWEQQLHFLEQHRAALTDANLEIPRYYAEAPIHAYEKGNLCWDSAIEEDLWAKLMIAPLFGGSLEGDELMREVWLSETKKIHEQVMQQEWKEEAKAKRVIDLGCGTGLSLFMAARAWPAAPEYLGIDLSPFKLAVTAEKLER 364          
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Match: A0A6H5KG82_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG82_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.600e-25
Identity = 55/169 (32.54%), Postives = 93/169 (55.03%), Query Frame = 1
Query:  142 KVLDFLFSIPIFNDALFGYYRKKMVKKAEGMGIKWTAFLEDLERNKENLLRAQEQLTDTALQIPQYYFAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNSV-----HGDVLMRRDWIDTCLKYISGSEVKNIVDLGCGTGLSMFMVQSAWPNADLLGVDLSTFKLAI 633
            K +D LF+   F D +    R+K+VK++  +G+ W   ++ + RN + L    ++L D  +  P YY+AP H Y +GNL W +A+E +  +  + A ++         HGD  +R ++     + + G E K+I+D+GC TGLS   +   +P+A + GVDLS   LA+
Sbjct:   34 KAIDTLFAFEPFFDYMVEEAREKIVKRSYTLGVGWAENVDGMRRNMDELQGEYDRLLDAKVSTPSYYYAPFHCYPEGNLSWQAALEVEPSAICVHADIYTGKKGVYERHGDDKLRGNFHQRMKEMLKGPEPKDILDIGCSTGLSTLKLAETFPSARITGVDLSPHMLAV 202          
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Match: D7FNV1_ECTSI (Methyltransferase type 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNV1_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.940e-23
Identity = 55/169 (32.54%), Postives = 92/169 (54.44%), Query Frame = 1
Query:  142 KVLDFLFSIPIFNDALFGYYRKKMVKKAEGMGIKWTAFLEDLERNKENLLRAQEQLTDTALQIPQYYFAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNSV-----HGDVLMRRDWIDTCLKYISGSEVKNIVDLGCGTGLSMFMVQSAWPNADLLGVDLSTFKLAI 633
            K +D LF+   F D +    R+K+VK++  +G+ W   ++ + RN + L    ++L D  +  P YY+AP H Y +GNL W +A+E +  +  + A ++         HGD  +R ++     + + G E K+I+D+GC TGLS   +   +P A + GVDLS   LA+
Sbjct:  114 KAIDTLFAFEPFFDYMVVEAREKIVKRSYTLGVGWAENVDGMRRNMDELQGEYDRLLDAKVSTPSYYYAPFHCYPEGNLSWQAALEVEPSAICVHADIYTGKKGVYERHGDDKLRGNFHQRMKEMLKGPEPKDILDIGCSTGLSTLKLAETFPLARITGVDLSPHMLAV 282          
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Match: A0A1Y0RFL6_9CYAN (SAM-dependent methyltransferase n=1 Tax=Nostocales cyanobacterium HT-58-2 TaxID=1940762 RepID=A0A1Y0RFL6_9CYAN)

HSP 1 Score: 102 bits (254), Expect = 2.090e-22
Identity = 54/157 (34.39%), Postives = 96/157 (61.15%), Query Frame = 1
Query:  202 RKKMVKKAEGMGIKWTAFLEDLERNKENLLRAQEQLTDTALQIPQYYFAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNS-VHGDVLMRRDWIDTCLKYISGSEVKNIVDLGCGTGLSMFMVQSAWPNADLLGVDLSTFKLAISLTKLEKKSISV 669
            R+ M+K+AE +G+ W   ++ L+        A+ Q   T    P+YYF P HAY  G+LCW++A+E ++ +  + A ++  +   GD ++R+ + D   K IS +E ++I+DLGCG GLS F +Q  +P+A + G+DLS + LA++  + E++  ++
Sbjct:   34 RQMMMKRAEKIGVNWLEEVQTLQARDWQTDLAKVQNPQTT--YPEYYFRPFHAYEKGDLCWEAALEFEVAAHTVHAGIWQGAGAQGDPMLRQSYHDILKKQIS-NEPQDILDLGCGVGLSTFALQKVYPHAKITGLDLSPYFLAVAKYRNEQRHANI 187          
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Match: A0A846FCR4_9CYAN (Class I SAM-dependent methyltransferase n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FCR4_9CYAN)

HSP 1 Score: 102 bits (254), Expect = 3.210e-22
Identity = 57/152 (37.50%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  202 RKKMVKKAEGMGIKWTAFLEDLE-RNKENLLRAQ-----EQLTDTALQIPQYYFAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNS-VHGDVLMRRDWIDTCLKYISGSEVKNIVDLGCGTGLSMFMVQSAWPNADLLGVDLSTFKLAIS 636
            R  M+++AE +G+ W    + L+ R KE  L ++      QLT+  L  P YY  P HAY  GNL WD+A E ++ +  + A ++ ++ V GD ++R+ + D    +I  +  ++IVDLGCG G+S F +Q+ +P A L GVDLS + LA++
Sbjct:   34 RNMMIERAESIGVNWRQAAKALKSRGKEAELASEWAIELAQLTNPQLTYPDYYLQPFHAYEQGNLSWDAATEVEVAAHAVHARIWPDAGVKGDAMLRQSYHDALQTHIPTAP-RDIVDLGCGVGMSTFTLQALYPQAQLTGVDLSPYFLAVA 184          
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Match: UPI0019825837 (methyltransferase domain-containing protein n=1 Tax=Nostoc sp. UHCC 0702 TaxID=2814655 RepID=UPI0019825837)

HSP 1 Score: 101 bits (251), Expect = 5.570e-22
Identity = 51/152 (33.55%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  193 GYYRKKMVKKAEGMGIKWTAFLEDLERNK--ENLLRAQEQLTDTALQIPQYYFAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNS--VHGDVLMRRDWIDTCLKYISGSEVKNIVDLGCGTGLSMFMVQSAWPNADLLGVDLSTFKLAIS 636
            G  RK+++K+A  +G+ W   ++ L  +K  EN      Q+ +  +  P YY    H+Y  GNLCW+SA+E+++ ++++    F+ +  V GD  +R+++ D     I+ +  ++I+DLGCG GLS F +Q A+PNA ++G+D+S + L+++
Sbjct:   25 GLARKRIIKRARSLGVDWHGQVQKLPLSKWKENFT----QIRNPDINYPSYYTKSFHSYERGNLCWESAIEQEIATQMLSYQTFSEAPGVKGDTKLRQNYHDFLKAQITKAP-RDILDLGCGVGLSTFAIQEAYPNAKVIGLDMSPYFLSVA 171          
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Match: UPI00034CEF8C (class I SAM-dependent methyltransferase n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI00034CEF8C)

HSP 1 Score: 99.4 bits (246), Expect = 3.220e-21
Identity = 53/146 (36.30%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  202 RKKMVKKAEGMGIKWTAFLEDLERNKENLLRAQEQLTDTALQIPQYYFAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNN-SVHGDVLMRRDWIDTCLKYISGSEVKNIVDLGCGTGLSMFMVQSAWPNADLLGVDLSTFKLAIS 636
            R+ M+ +AEGMG+ W   + +          AQ Q  DT  Q P YY    HAY  GN+ W++A E ++ +  + + ++NN S  GD ++RR + D     I  S  ++I+D+GC  G+S F +Q+ +P A+L G+DLS + LAI+
Sbjct:   33 RQMMIDRAEGMGVPWRKIVAEWRSRDLESELAQVQNPDT--QYPDYYLTSFHAYEKGNMSWEAATEVEVAAYAVHSKIWNNNSPEGDAMLRRSYHDVMTNQIQ-SPPQDILDIGCSVGMSTFALQAVYPQANLTGLDLSPYFLAIA 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116037.1262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE50_9PHAE1.660e-12779.65Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A835YXI6_9STRA9.160e-9666.98S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S4D7M6_HETAK1.180e-6356.65Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A0G4G324_9ALVE2.890e-4447.09Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A6H5KG82_9PHAE4.600e-2532.54Methyltransf_11 domain-containing protein n=1 Tax=... [more]
D7FNV1_ECTSI1.940e-2332.54Methyltransferase type 11 n=1 Tax=Ectocarpus silic... [more]
A0A1Y0RFL6_9CYAN2.090e-2234.39SAM-dependent methyltransferase n=1 Tax=Nostocales... [more]
A0A846FCR4_9CYAN3.210e-2237.50Class I SAM-dependent methyltransferase n=1 Tax=Cy... [more]
UPI00198258375.570e-2233.55methyltransferase domain-containing protein n=1 Ta... [more]
UPI00034CEF8C3.220e-2136.30class I SAM-dependent methyltransferase n=1 Tax=Ps... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116037contigH-elongata_contig116037:330..1997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog2880.D7FNV1
KEGG koko:K20069
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2CV5Z@1,2RRD0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-17_003450.1
Exons4
Model size690
Cds size690
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116037.1262.1prot_H-elongata_contig116037.1262.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116037 330..1997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.691651-CDS-H-elongata_contig116037:329..6191622929673.691651-CDS-H-elongata_contig116037:329..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116037 330..619 +
1691679114.550062-CDS-H-elongata_contig116037:329..6191691679114.550062-CDS-H-elongata_contig116037:329..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116037 330..619 +
1622929673.7114363-CDS-H-elongata_contig116037:858..9671622929673.7114363-CDS-H-elongata_contig116037:858..967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116037 859..967 +
1691679114.562429-CDS-H-elongata_contig116037:858..9671691679114.562429-CDS-H-elongata_contig116037:858..967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116037 859..967 +
1622929673.7277331-CDS-H-elongata_contig116037:1248..13861622929673.7277331-CDS-H-elongata_contig116037:1248..1386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116037 1249..1386 +
1691679114.5716674-CDS-H-elongata_contig116037:1248..13861691679114.5716674-CDS-H-elongata_contig116037:1248..1386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116037 1249..1386 +
1622929673.744108-CDS-H-elongata_contig116037:1844..19971622929673.744108-CDS-H-elongata_contig116037:1844..1997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116037 1845..1997 +
1691679114.5808642-CDS-H-elongata_contig116037:1844..19971691679114.5808642-CDS-H-elongata_contig116037:1844..1997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116037 1845..1997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116037.1262.1

>prot_H-elongata_contig116037.1262.1 ID=prot_H-elongata_contig116037.1262.1|Name=mRNA_H-elongata_contig116037.1262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
AASQGRSSTAPSMVLITRNERVTSTNNRVETTIPNVNGAAVLDSWQYKVL
DFLFSIPIFNDALFGYYRKKMVKKAEGMGIKWTAFLEDLERNKENLLRAQ
EQLTDTALQIPQYYFAPIHAYADGNLCWDSAMEEDLWSKLMIAPLFNNSV
HGDVLMRRDWIDTCLKYISGSEVKNIVDLGCGTGLSMFMVQSAWPNADLL
GVDLSTFKLAISLTKLEKKSISVKSKVRR*
back to top

mRNA from alignment at H-elongata_contig116037:330..1997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116037.1262.1 ID=mRNA_H-elongata_contig116037.1262.1|Name=mRNA_H-elongata_contig116037.1262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1668bp|location=Sequence derived from alignment at H-elongata_contig116037:330..1997+ (Himanthalia elongata Himel1 dioecious)
GCAGCGTCGCAAGGACGAAGTTCAACGGCGCCGAGCATGGTACTTATCAC GCGCAACGAGCGCGTCACGAGCACCAACAACCGGGTAGAAACGACCATTC CCAACGTCAACGGTGCGGCAGTTTTAGACTCTTGGCAGTACAAGGTCCTC GACTTCCTCTTCTCGATACCGATCTTCAACGATGCGCTGTTCGGGTACTA CCGAAAGAAGATGGTCAAGAAGGCCGAAGGGATGGGGATCAAGTGGACGG CGTTTCTCGAAGACCTTGAGCGAAACAAAGAAAACCTATTGTAAGAGGAT GGGGGGGGAGGGAGGGGGGAGGGGCTGCGCTCCGCGCGATAAGCATGTTT CGCGATCCGTGTTTTTTGGTTGGCTTGCCTCAAGACTTTGCGGGCGCTTT GCGATGTCTCGCTGATTGATTTCGCAAGCTCTGCGCTAGAAGACGTATGG GGTATATTTTCAGCTTTTGGTGGGCATTTGACACACTTTTCCCTGCGTCC ACGACCTCCCCCTACCCGCCTTGGTTCAGGAGGGCACAGGAGCAGCTGAC AGACACCGCGTTGCAAATCCCGCAGTATTATTTTGCTCCGATCCACGCCT ACGCCGATGGAAACCTTTGCTGGGATAGCGCCATGGAGGTGGGGTGTTGC GTCATCAACGCTTTTTCGCTCTACTTAAGAGACTCCGCATGAAGGGTTGA ATCGCAGCATATATCCCGCCAAGTAGCAGAGTGACTGTGCATGGTGAGAA AAGTGTAGTGATGCATGATTCTGTTGCGTTGAAGCAGGTGGTCCTGCTGG GCGCCCGCATTGGATTTTTTATCGCACCATAAATATTCCTTGGAGACGGG AAATTATAGCTTTCTCACCGTCAGATCGCCCATGTAGACACACGGGTGTG ATTGCCTTGTGTTGTGCAGGAGGACTTGTGGAGCAAGCTAATGATCGCTC CACTGTTCAACAACTCGGTCCACGGAGACGTTCTCATGCGTAGAGATTGG ATCGACACCTGCCTCAAGTACATCAGCGGAAGCGAAGTCAAGAATATCGT CGACTTGGTGCGCCACAGCAAAATTGTCGAGGCACATAAATAATGTGGTC GTGTGATGGTTGCGTGCGTCCAGAGGCTCCCGAGAGTAGGAATCTAGATT CGATTGTTTTCGCACTTACTTAATAAATTAGTTTAGGGTTAGCTCGAGCG TTTTCAAAGCGTCGATAGGTTCATGGAAGCTTCCAATGCCATGCCGTCGC TGTCCGACACGAACCCGGGCGTGCTTGCGGGGGTGGTTTCCGCCGCCATC GGCGGAGTATCTTAAAATATGAAGACTGGCGGATAACGCCTCGAGTTTTT GGGCCCCTGCCAGCCCCTTCCACCGTTCCCTCTCGACATCGCGCATCATT ATTTTCCCGCCGCGTTTTCCCTTTGTCCCACGGCTTACGCCGCCATTTTC TGACGCGACTCCTCGGGTGGCGATTCCTTCTCACCTCTGGTGCTCCTTCT TGCGTGTTTGGTTAGGGGTGTGGGACGGGTCTATCGATGTTTATGGTCCA GTCGGCGTGGCCCAACGCTGACCTCCTCGGGGTAGACCTGTCGACGTTTA AGCTGGCAATTTCACTGACCAAGTTGGAGAAGAAGTCGATCAGCGTGAAG TCTAAGGTGAGACGTTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig116037:330..1997+

>mRNA_H-elongata_contig116037.1262.1 ID=mRNA_H-elongata_contig116037.1262.1|Name=mRNA_H-elongata_contig116037.1262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig116037:330..1997+ (Himanthalia elongata Himel1 dioecious)
GCAGCGTCGCAAGGACGAAGTTCAACGGCGCCGAGCATGGTACTTATCAC
GCGCAACGAGCGCGTCACGAGCACCAACAACCGGGTAGAAACGACCATTC
CCAACGTCAACGGTGCGGCAGTTTTAGACTCTTGGCAGTACAAGGTCCTC
GACTTCCTCTTCTCGATACCGATCTTCAACGATGCGCTGTTCGGGTACTA
CCGAAAGAAGATGGTCAAGAAGGCCGAAGGGATGGGGATCAAGTGGACGG
CGTTTCTCGAAGACCTTGAGCGAAACAAAGAAAACCTATTGCAGCGTCGC
AAGGACGAAGTTCAACGGCGCCGAGCATGGTACTTATCACGCGCAACGAG
CGCGTCACGAGCACCAACAACCGGGTAGAAACGACCATTCCCAACGTCAA
CGGTGCGGCAGTTTTAGACTCTTGGCAGTACAAGGTCCTCGACTTCCTCT
TCTCGATACCGATCTTCAACGATGCGCTGTTCGGGTACTACCGAAAGAAG
ATGGTCAAGAAGGCCGAAGGGATGGGGATCAAGTGGACGGCGTTTCTCGA
AGACCTTGAGCGAAACAAAGAAAACCTATTGAGGGCACAGGAGCAGCTGA
CAGACACCGCGTTGCAAATCCCGCAGTATTATTTTGCTCCGATCCACGCC
TACGCCGATGGAAACCTTTGCTGGGATAGCGCCATGGAGGAGGGCACAGG
AGCAGCTGACAGACACCGCGTTGCAAATCCCGCAGTATTATTTTGCTCCG
ATCCACGCCTACGCCGATGGAAACCTTTGCTGGGATAGCGCCATGGAGGA
GGACTTGTGGAGCAAGCTAATGATCGCTCCACTGTTCAACAACTCGGTCC
ACGGAGACGTTCTCATGCGTAGAGATTGGATCGACACCTGCCTCAAGTAC
ATCAGCGGAAGCGAAGTCAAGAATATCGTCGACTTGGAGGACTTGTGGAG
CAAGCTAATGATCGCTCCACTGTTCAACAACTCGGTCCACGGAGACGTTC
TCATGCGTAGAGATTGGATCGACACCTGCCTCAAGTACATCAGCGGAAGC
GAAGTCAAGAATATCGTCGACTTGGGGTGTGGGACGGGTCTATCGATGTT
TATGGTCCAGTCGGCGTGGCCCAACGCTGACCTCCTCGGGGTAGACCTGT
CGACGTTTAAGCTGGCAATTTCACTGACCAAGTTGGAGAAGAAGTCGATC
AGCGTGAAGTCTAAGGTGAGACGTTAGGGGTGTGGGACGGGTCTATCGAT
GTTTATGGTCCAGTCGGCGTGGCCCAACGCTGACCTCCTCGGGGTAGACC
TGTCGACGTTTAAGCTGGCAATTTCACTGACCAAGTTGGAGAAGAAGTCG
ATCAGCGTGAAGTCTAAGGTGAGACGTTAG
back to top