mRNA_H-elongata_contig52888.12612.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52888.12612.1
Unique NamemRNA_H-elongata_contig52888.12612.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6H5KLG4_9PHAE (Rieske domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG4_9PHAE)

HSP 1 Score: 476 bits (1226), Expect = 3.710e-160
Identity = 235/307 (76.55%), Postives = 259/307 (84.36%), Query Frame = 1
Query:    4 TRVPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGT----------RSTASPS----------CGARKAPTYPVKELGGWIYIFPDETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTE---VVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPINK 855
            TRVPNLWLAV H+S VKAGEVKKVEVDGVPIALWR++TG +SA SDVCIHRGASLARG I +DRLVCPYHGFEFE++GRLAHMPG           R+   P+          CG RKAPTYPVKE  GWIYIFPDETRPGSVEQH DPV+IPEA+SP FR ++GSM+ +GGV A VENMLD+LHISFVHSFGN Q+PTPF VSYE+G+DDPGT+AL TS+VTFRYRSGSKSFSKVVGKSTE   VVVKNEFHLPYRAVIRV+FG NSLKTIEATAVP A GETTLHWKLYRNFA++HPLDEGPINK
Sbjct:  238 TRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCPYHGFEFESNGRLAHMPGAGRPKGSAAVARAAGRPATADAADKAKACGGRKAPTYPVKESAGWIYIFPDETRPGSVEQHLDPVVIPEAVSPQFRCIQGSMDFKGGVDASVENMLDMLHISFVHSFGNQQDPTPFAVSYERGFDDPGTEALATSQVTFRYRSGSKSFSKVVGKSTEXGCVVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINK 544          
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A836CFS0_9STRA (Rieske domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFS0_9STRA)

HSP 1 Score: 375 bits (963), Expect = 3.680e-122
Identity = 179/285 (62.81%), Postives = 213/285 (74.74%), Query Frame = 1
Query:   10 VPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGTRSTASPSCGA----RKAPTYPVKELGGWIYIFPDETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPIN 852
            VPNLWLAVGH SS+K  +V KV VDG PIA+WR++TG L A+SD+CIHRGASLA+G +  DRLVCPYHGFEF+  G L +MPG         G     RK   Y V+E  GWIY+FPD  RPG++EQ+ +P  I EA  P FR VEGS+EI G   AC+ENMLDLLHIS+VHSFGNL  P PFEV Y   YDD    AL ++ VTFRY+SG KSFSKVVGKS EVVV+NE+HLPY AVIRV FGE+ +KTI A AVP+  G+TTLHWKLYRNF ++HP+D+GP+N
Sbjct:  153 VPNLWLAVGHMSSLKGKKVLKVTVDGKPIAIWRTSTGELKAISDICIHRGASLAKGWLHQDRLVCPYHGFEFDGHGTLQYMPGVTKEGVTKQGCSGSGRKTQAYLVREKNGWIYLFPDAARPGAIEQYSEPFTIAEASDPRFRYVEGSVEIGGDAAACMENMLDLLHISYVHSFGNLNSPVPFEVDYNHSYDD-ANGALASTSVTFRYKSGPKSFSKVVGKSPEVVVRNEYHLPYHAVIRVFFGEDCIKTIHAAAVPSEEGKTTLHWKLYRNFFMTHPMDQGPLN 436          
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A4D9DEC4_9STRA (Rieske domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEC4_9STRA)

HSP 1 Score: 295 bits (756), Expect = 7.060e-90
Identity = 141/284 (49.65%), Postives = 194/284 (68.31%), Query Frame = 1
Query:    7 RVPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGT-RSTASPSCGARKAPTYPVKELGGWIYIFPDETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPINK 855
            +VPN WLAV H+SS+K  E+KK+ VD  PI L+R+A+G + A+SD+C+HR A+L+ G +  D +VCPYH ++F+ +G+L ++PG      + +    +   Y   E GG IY+FPD  R G++EQH  P +IPE + P+FR VEG  EI+      VEN+LD+LHIS+VHSFGN+QEP PF  +Y+  +DD  +  L  ++ TF+YR+G  S SKVVG+  EVVV+NEFHLPY  V RV FG++ +KTI   AVP   G T +H+KLYRNF   HP DE P+NK
Sbjct:  264 KVPNTWLAVCHSSSLKKKELKKIWVDDKPICLFRAASGEVKAISDICLHRAAALSDGWLDGDLVVCPYHAYKFDGEGKLRYIPGVDEGMLAKNKRTARTVWYKTLEQGGLIYLFPDAMRAGAIEQHVKPFLIPEEVDPSFRVVEGVTEIKASANLVVENLLDMLHISYVHSFGNMQEPLPFSENYDYFFDDEASQLLPYARTTFKYRAGPTSISKVVGQVKEVVVENEFHLPYTTVTRVKFGKD-VKTIYVVAVPVEDGLTVVHYKLYRNFMYVHPQDESPVNK 546          
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6U4DAF0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DAF0_9STRA)

HSP 1 Score: 268 bits (686), Expect = 2.800e-82
Identity = 143/299 (47.83%), Postives = 189/299 (63.21%), Query Frame = 1
Query:   19 LWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLV-CPYHGFEFEADG---RLAHMPG-----TRSTASPSCGA-----RKAPTYPVKELGGWIYIFPDETRPGSVEQHR-----DPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDA--LMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPIN 852
            +WL V H++ V   + K +E+DG+PI +WR  +G LSA+SDVCIHRGASLA+G +     V CPYHGFE+E DG   R A++ G     T   A    G       +  +YPV+E GGWI +FP  T     + H      +P+  PE  +P FRA++GS++I G V A +EN+LD+LHIS+VH FGN QEP P    Y   YDDP  +   L + KV F Y +G +++SKVVG +  V V+NEFHLPY A+IRVHF   S KTI A+A+P     T L++KLYRNFA++H  DEGPIN
Sbjct:  238 VWLTVAHSADVPKMKTKLIEIDGIPIVVWRDQSGRLSALSDVCIHRGASLAKGWVSKSGCVACPYHGFEYEHDGALVRTANVMGRDEHETEQEAIDRIGRIPGDPPQTVSYPVREAGGWIQVFPRSTVEAFGQLHAPETVLEPLHYPELSTPGFRAIQGSVDINGSVDATMENVLDMLHISYVHLFGNAQEPLPISTDYSSSYDDPDPNRRLLKSGKVVFTYNAGPRAWSKVVGGADVVRVENEFHLPYTAIIRVHFS-GSTKTIVASALPLGKKRTRLNYKLYRNFAITHEKDEGPIN 535          
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A7R9YCQ8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCQ8_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.340e-52
Identity = 89/159 (55.97%), Postives = 114/159 (71.70%), Query Frame = 1
Query:  385 DPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDA--LMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPINK 855
            DP+  PE +   FRA+EG ++I G V A +EN+LDLLHIS+VH FGN QEP P    +   YDDP  +   + + KV F Y +GSK++SKVVG +  V V+NEFHLPY A+IRVHFGE S KTI A+A P +  +T L++KLYRNFA++HP DEGPINK
Sbjct:    2 DPLAYPEMIPEKFRAIEGGVDIEGSVEAVMENVLDLLHISYVHLFGNAQEPFPITTEFHTSYDDPHPNQRNIKSGKVVFTYNAGSKAWSKVVGGARIVRVENEFHLPYTAIIRVHFGE-STKTIVASATPVSAKKTRLNYKLYRNFAITHPKDEGPINK 159          
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: D8LGX3_ECTSI (Rieske (2Fe-2S) domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX3_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 4.020e-46
Identity = 113/284 (39.79%), Postives = 123/284 (43.31%), Query Frame = 1
Query:    4 TRVPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKAPTYPVKELGGWIYIFPDETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPINK 855
            TRVPNLWLAV H+S VKAGEVKKVEVDGVPIALWR++TG +SA SDVCIHRGASLARG I +DRLVCP                                                                                                                                                        ++VVVKNEFHLPYRAVIRV+FG NSLKTIEATAVP A GETTLHWKLYRNFA++HPLDEGPINK
Sbjct:  172 TRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCP--------------------------------------------------------------------------------------------------------------------------------------------------------SQVVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINK 303          
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6C0FAQ2_9ZZZZ (Rieske domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FAQ2_9ZZZZ)

HSP 1 Score: 163 bits (412), Expect = 2.210e-44
Identity = 101/280 (36.07%), Postives = 150/280 (53.57%), Query Frame = 1
Query:   10 VPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDR-LVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKAPTYPVKELGGWIYIFPD---ETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLD 837
            +P  W  + + +     + K+   +G PIA+++     ++A+SD+C+HR ASL+ G + S+  L CPYHG+E+   G +  MPG   T   + G    P + +K++   IYI P     ++ G+   H    I PEA  P F  V G   I+       EN+LD++HIS+VHSFGN   P PFE+ Y Q  D+      ++ + TF Y +G  S SK++G +  V V+NEFHLP   V RV   + + KTI     P    E+ LH+ LYRNF  +  LD
Sbjct:   35 LPLFW-KIANKNEFPYNQPKRYLFNGYPIAVYKDYNNNITAISDICVHRSASLSNGKVLSNNCLQCPYHGWEYNK-GLVDLMPGFPDTKKNAFGV---PRFELKDINEDIYIRPTFDMNSQKGNYYNH-SVYIPPEANDPKFVRVSGVRHIKRPHNLVTENVLDMMHISYVHSFGNSLAPVPFEIEY-QDIDE------LSGRTTFYYTAGQNSMSKIIGGAKYVQVENEFHLPDMTVTRVKANQIT-KTIITHCYPVGKNESILHFDLYRNFFTTQFLD 300          
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6C0AW45_9ZZZZ (Rieske domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AW45_9ZZZZ)

HSP 1 Score: 157 bits (398), Expect = 2.190e-42
Identity = 92/252 (36.51%), Postives = 134/252 (53.17%), Query Frame = 1
Query:   91 PIALWRSATGVLSAVSDVCIHRGASLARGSIFSDR-LVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKAPTYPVKELGGWIYIFP-DETRPGSVEQHRDPVIIP-EALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLD 837
            P+ ++R+    + A++D+C+HRGASL++G I  +  L CPYHG+++  DG +  +PG       + G  +   + V E    IYI P  +   G  E +   + IP EA +  +  + GS +I        EN+LD++H+SFVHSFGN   P PF++ YE   D  G       K  F Y +G  S S ++G S  VVV+NEF+LP   V RV   +  +KTI     P    E+ LH+ LYRNF  S   D
Sbjct:   52 PLCIYRNNDNKVIAINDICVHRGASLSQGKILPNNCLQCPYHGWQYN-DGIVQSIPGCPEKKMGTVGVNQ---FSVCEENSDIYIQPFQDINTGKGEHYNHSIYIPPEANNIGYTRISGSKKISRPASLVTENVLDMMHVSFVHSFGNSMSPVPFKIMYEDINDYSG-------KTIFHYTAGPTSMSSILGNSQFVVVENEFYLPDTTVTRVKANDQLIKTIVTHCYPIGKNESILHYDLYRNFMTSSLFD 292          
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6C0DPW3_9ZZZZ (Rieske domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DPW3_9ZZZZ)

HSP 1 Score: 153 bits (387), Expect = 2.010e-40
Identity = 93/266 (34.96%), Postives = 131/266 (49.25%), Query Frame = 1
Query:   22 WLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKAPTYPVKELGGWIYIFPDETRPGS-VEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNF 816
            W  +G +        KK  +      +WRS       ++DVC H+GASL+ G I SD +VCPYHG+EF  DG L+ +PG     SP       P Y V E  GW+Y+        S  E   D   I   +S N   V+ +M+         EN LD++HI+FVH+FGN Q+P P+        D P        K T+ Y +G  S ++ V    ++V++NEF LP+  V RV FGE  + T+   A+P    ++ L  K YRNF
Sbjct:   66 WYVIGKSIDFSVNIPKKARIWNTNYVVWRSENDTFIGLNDVCPHKGASLSGGKICSDYIVCPYHGYEFNTDGALSKVPGISFQPSP---IYDIPKYKVVEKNGWVYLNTRAINKSSEAEVFVDNFYIEPEVSANCSMVQLNMDYNCYSRILSENSLDVMHIAFVHTFGNAQKPGPYRE------DPPKLVGKNHYKTTYYYEAGEDSAARKVFGIKDLVIENEFILPHTTVARVIFGEY-VSTVITFALPLGDKKSRLFVKTYRNF 321          
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6C0IFW7_9ZZZZ (Rieske domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IFW7_9ZZZZ)

HSP 1 Score: 151 bits (381), Expect = 4.440e-39
Identity = 88/270 (32.59%), Postives = 137/270 (50.74%), Query Frame = 1
Query:   22 WLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKAPTYPVKELGGWIYIFPDETRPGSVEQHRDPVII--PEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGT---DALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNF 816
            W  +G  +     ++ K++V      +WRS  G L A+ D C HR ASL+ G I  DR+ CPYHG+EF+ +G L  +PG + T   SC +     + + E  GW+Y+    +      +H    I   PEA    FR V   M+         EN+LDL+HI F H+FGN+  P P         +DP T   D     +  + Y++ +++ +K +  S  V ++NEF LP+  + RV F +  +KT+ A+ +P    +T +  K+YRNF
Sbjct:  117 WYVIGETTQFLPNKLHKIQVWDKLYVVWRSVEGHLHALQDTCSHRSASLSNGKIIHDRIACPYHGYEFDTNGTLVVVPGIQITKYVSCYS--VTKFDILEKNGWVYLNILPSNATDTTKHLLDTIYSEPEASRRMFRPVFLQMDYLCYSRVLSENILDLMHIPFTHTFGNIDHPAPIR-------EDPPTLLDDFPYHYQSRYLYKTSNQTIAKFIFGSEVVTIENEFILPHTTISRVIF-DKYVKTVVASVLPIGNNKTRMFTKVYRNF 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLG4_9PHAE3.710e-16076.55Rieske domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CFS0_9STRA3.680e-12262.81Rieske domain-containing protein n=1 Tax=Tribonema... [more]
A0A4D9DEC4_9STRA7.060e-9049.65Rieske domain-containing protein n=3 Tax=Monodopsi... [more]
A0A6U4DAF0_9STRA2.800e-8247.83Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YCQ8_9STRA2.340e-5255.97Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
D8LGX3_ECTSI4.020e-4639.79Rieske (2Fe-2S) domain protein n=1 Tax=Ectocarpus ... [more]
A0A6C0FAQ2_9ZZZZ2.210e-4436.07Rieske domain-containing protein n=1 Tax=viral met... [more]
A0A6C0AW45_9ZZZZ2.190e-4236.51Rieske domain-containing protein n=1 Tax=viral met... [more]
A0A6C0DPW3_9ZZZZ2.010e-4034.96Rieske domain-containing protein n=1 Tax=viral met... [more]
A0A6C0IFW7_9ZZZZ4.440e-3932.59Rieske domain-containing protein n=1 Tax=viral met... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52888contigH-elongata_contig52888:227..2208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score118.2
Seed ortholog evalue6.1e-24
Seed eggNOG ortholog1173020.Cha6605_5171
EggNOG free text desc.Rieske (2Fe-2S) domain
EggNOG OGs1G4T7@1117,COG4638@1,COG4638@2
COG Functional cat.P
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size855
Cds size855
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52888.12612.1prot_H-elongata_contig52888.12612.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52888 227..2208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.911259-CDS-H-elongata_contig52888:226..4121622930863.911259-CDS-H-elongata_contig52888:226..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52888 227..412 -
1691679602.8143995-CDS-H-elongata_contig52888:226..4121691679602.8143995-CDS-H-elongata_contig52888:226..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52888 227..412 -
1622930863.939442-CDS-H-elongata_contig52888:886..12941622930863.939442-CDS-H-elongata_contig52888:886..1294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52888 887..1294 -
1691679602.824389-CDS-H-elongata_contig52888:886..12941691679602.824389-CDS-H-elongata_contig52888:886..1294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52888 887..1294 -
1622930863.9522922-CDS-H-elongata_contig52888:1351..14041622930863.9522922-CDS-H-elongata_contig52888:1351..1404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52888 1352..1404 -
1691679602.836328-CDS-H-elongata_contig52888:1351..14041691679602.836328-CDS-H-elongata_contig52888:1351..1404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52888 1352..1404 -
1622930863.9675992-CDS-H-elongata_contig52888:2000..22081622930863.9675992-CDS-H-elongata_contig52888:2000..2208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52888 2001..2208 -
1691679602.8475454-CDS-H-elongata_contig52888:2000..22081691679602.8475454-CDS-H-elongata_contig52888:2000..2208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52888 2001..2208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52888.12612.1

>prot_H-elongata_contig52888.12612.1 ID=prot_H-elongata_contig52888.12612.1|Name=mRNA_H-elongata_contig52888.12612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp
ATRVPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCI
HRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKA
PTYPVKELGGWIYIFPDETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEI
RGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMT
SKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTI
EATAVPTACGETTLHWKLYRNFALSHPLDEGPINK
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mRNA from alignment at H-elongata_contig52888:227..2208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52888.12612.1 ID=mRNA_H-elongata_contig52888.12612.1|Name=mRNA_H-elongata_contig52888.12612.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1982bp|location=Sequence derived from alignment at H-elongata_contig52888:227..2208- (Himanthalia elongata Himel1 dioecious)
GCGACCCGCGTGCCGAACCTTTGGCTGGCCGTGGGGCACGCTTCGAGCGT CAAGGCCGGGGAGGTGAAGAAGGTGGAAGTGGACGGCGTGCCGATAGCAC TGTGGCGAAGCGCTACCGGAGTCTTGAGCGCGGTGTCCGACGTTTGCATC CACCGTGGGGCAAGTCTCGCCCGCGGGTCGATCTTTAGCGATCGTTTGGT ATGTCCATGTGAGTGTGTACCTATAGTATGTGCCCGGGGAAAGTGTGGGG GGGAAGGGAGGCGCGGTGCATGTCCATGGCGTTTTGAGCCGATCGATCTA CCCTTTTGAATACCAGGCAGCCAATCGACGTGGTGGAGGTGTGCACGAGG GTTCGATCTTAACAAAGCAAAATCCCGAGATCGGCTCCTTGGGTCTTTTT CCTCATCTCAATCCCCTAGCGACTGAACATATGTGCCTGCTCGCCAGACT TCGGACCGCAGCATGTTGAAATCAAGCTATAGCACCGACGATGGTGTGAC GGCCAATATATTGTATATTGTTGCTTTAGTGAAAGCAGCCACCAAAAAAC TACATCTCGGGGTACGGCGTGGAGCTCTCTCCCGTCCGCTGATCCAAGTG ACTCGCACGATTTCTCCTGTTTCATATGAATTTCCCCGCAAAAAAAACCC AACAACAACGACAACAACCGGATTATCGCCACCGTCACTCTTCCCTTCCT CACTTCTCCGGCGACCCCACGACGGCGCACCCTCACTTCGCCCTCGTTCT TCTCCGCCCCCAAAACGACCAAACACTGAATCATGACACTCACGGTACCC AAAGACCACGGTTTTGAATTCGAAGCCGATGGCCGCTTGGCGCACATGCC CGGAACGGTTCCTCCTGCGGGAAATCCTCCATCTGTCGCGGGGAAAACGG CAACGGGAAGAAAGCGCTCTACCGCCTCCCCTTCCTGCGGCGCCCGGAAG GCCCCCACCTACCCTGTCAAGGAGCTGGGAGGTTGGATTTACATTTTCCC CGACGAGACTCGGCCGGGATCGGTGGAGCAGCATCGCGACCCAGTGATTA TCCCTGAAGCGCTCTCGCCAAATTTCCGCGCGGTGGAAGGGTCGATGGAG ATCAGAGGAGGGGTGGGCGCGTGCGTTGAGAACATGCTCGACTTGCTGCA CATCTCGTTCGTCCACAGCTTCGGGAATCTGCAGGAGCCAACGCCGTTCG AGGTTTCCTACGAGCAGGGATACGATGACCCGGGTACGGACGCGTTGATG ACGTCGAAGGTTACGTTTCGCTACCGGTCCGGAAGCAAGTCGTTCAGCAA GGTCGTCGGCAAGAGTACGGAGGTTTGTGGGGTGCACTGGGGGGCGGTGG TGGTATCCGTAGGTGTTAGTGTAGGAATCGAGTAGGGTTCGACGGAGCTG ACGGAGCTTTTCATCCACAACGTTCGACAGTGCACGGTTTGAAGCAAATA TGTCGGGGGGGGGTGAAGTTGGTAAAGGCAGTGGCGAAGGTTGGTGGAGA AGAGGCAACGTACATCCCCCCACCCCAACCCGATTTCCAAATACCGGTCC ACGTTTAGAATGAAGGGATGATCGCGCGTCCCGCGCTCACCTATAATCGG GATCCTCGTGCGACCAGATATGGTAGATTTTGGACAACGTGGGAAACGTG ACTTGTGTGTGTCCTCCCATATCGCTGGTTTAGCCTGTGCGAGTTGGCGT CTTTCCTGACCATCCTCTCGAAGAAAACATGCGCTGTGCTCACGCGGCCC AAAAATGTTTATGGTGGATTTATATTCTCCTTGACGCCGACGGCAGGTGG TAGTGAAGAACGAGTTCCATCTCCCATACCGCGCCGTGATCCGCGTGCAC TTCGGCGAGAATAGCCTCAAGACCATCGAGGCGACGGCCGTGCCTACGGC GTGCGGAGAGACCACCCTCCATTGGAAGCTCTACCGAAACTTCGCCCTCT CCCACCCGCTCGACGAGGGTCCGATCAACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig52888:227..2208-

>mRNA_H-elongata_contig52888.12612.1 ID=mRNA_H-elongata_contig52888.12612.1|Name=mRNA_H-elongata_contig52888.12612.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig52888:227..2208- (Himanthalia elongata Himel1 dioecious)
GCGACCCGCGTGCCGAACCTTTGGCTGGCCGTGGGGCACGCTTCGAGCGT
CAAGGCCGGGGAGGTGAAGAAGGTGGAAGTGGACGGCGTGCCGATAGCAC
TGTGGCGAAGCGCTACCGGAGTCTTGAGCGCGGTGTCCGACGTTTGCATC
CACCGTGGGGCAAGTCTCGCCCGCGGGTCGATCTTTAGCGATCGTTTGGT
ATGTCCATGCGACCCGCGTGCCGAACCTTTGGCTGGCCGTGGGGCACGCT
TCGAGCGTCAAGGCCGGGGAGGTGAAGAAGGTGGAAGTGGACGGCGTGCC
GATAGCACTGTGGCGAAGCGCTACCGGAGTCTTGAGCGCGGTGTCCGACG
TTTGCATCCACCGTGGGGCAAGTCTCGCCCGCGGGTCGATCTTTAGCGAT
CGTTTGGTATGTCCATACCACGGTTTTGAATTCGAAGCCGATGGCCGCTT
GGCGCACATGCCCGGAACGACCACGGTTTTGAATTCGAAGCCGATGGCCG
CTTGGCGCACATGCCCGGAACGCGCTCTACCGCCTCCCCTTCCTGCGGCG
CCCGGAAGGCCCCCACCTACCCTGTCAAGGAGCTGGGAGGTTGGATTTAC
ATTTTCCCCGACGAGACTCGGCCGGGATCGGTGGAGCAGCATCGCGACCC
AGTGATTATCCCTGAAGCGCTCTCGCCAAATTTCCGCGCGGTGGAAGGGT
CGATGGAGATCAGAGGAGGGGTGGGCGCGTGCGTTGAGAACATGCTCGAC
TTGCTGCACATCTCGTTCGTCCACAGCTTCGGGAATCTGCAGGAGCCAAC
GCCGTTCGAGGTTTCCTACGAGCAGGGATACGATGACCCGGGTACGGACG
CGTTGATGACGTCGAAGGTTACGTTTCGCTACCGGTCCGGAAGCAAGTCG
TTCAGCAAGGTCGTCGGCAAGAGTACGGAGCGCTCTACCGCCTCCCCTTC
CTGCGGCGCCCGGAAGGCCCCCACCTACCCTGTCAAGGAGCTGGGAGGTT
GGATTTACATTTTCCCCGACGAGACTCGGCCGGGATCGGTGGAGCAGCAT
CGCGACCCAGTGATTATCCCTGAAGCGCTCTCGCCAAATTTCCGCGCGGT
GGAAGGGTCGATGGAGATCAGAGGAGGGGTGGGCGCGTGCGTTGAGAACA
TGCTCGACTTGCTGCACATCTCGTTCGTCCACAGCTTCGGGAATCTGCAG
GAGCCAACGCCGTTCGAGGTTTCCTACGAGCAGGGATACGATGACCCGGG
TACGGACGCGTTGATGACGTCGAAGGTTACGTTTCGCTACCGGTCCGGAA
GCAAGTCGTTCAGCAAGGTCGTCGGCAAGAGTACGGAGGTGGTAGTGAAG
AACGAGTTCCATCTCCCATACCGCGCCGTGATCCGCGTGCACTTCGGCGA
GAATAGCCTCAAGACCATCGAGGCGACGGCCGTGCCTACGGCGTGCGGAG
AGACCACCCTCCATTGGAAGCTCTACCGAAACTTCGCCCTCTCCCACCCG
CTCGACGAGGGTCCGATCAACAAGGTGGTAGTGAAGAACGAGTTCCATCT
CCCATACCGCGCCGTGATCCGCGTGCACTTCGGCGAGAATAGCCTCAAGA
CCATCGAGGCGACGGCCGTGCCTACGGCGTGCGGAGAGACCACCCTCCAT
TGGAAGCTCTACCGAAACTTCGCCCTCTCCCACCCGCTCGACGAGGGTCC
GATCAACAAG
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