mRNA_H-elongata_contig52888.12612.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6H5KLG4_9PHAE (Rieske domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG4_9PHAE) HSP 1 Score: 476 bits (1226), Expect = 3.710e-160 Identity = 235/307 (76.55%), Postives = 259/307 (84.36%), Query Frame = 1
Query: 4 TRVPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGT----------RSTASPS----------CGARKAPTYPVKELGGWIYIFPDETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTE---VVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPINK 855
TRVPNLWLAV H+S VKAGEVKKVEVDGVPIALWR++TG +SA SDVCIHRGASLARG I +DRLVCPYHGFEFE++GRLAHMPG R+ P+ CG RKAPTYPVKE GWIYIFPDETRPGSVEQH DPV+IPEA+SP FR ++GSM+ +GGV A VENMLD+LHISFVHSFGN Q+PTPF VSYE+G+DDPGT+AL TS+VTFRYRSGSKSFSKVVGKSTE VVVKNEFHLPYRAVIRV+FG NSLKTIEATAVP A GETTLHWKLYRNFA++HPLDEGPINK
Sbjct: 238 TRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCPYHGFEFESNGRLAHMPGAGRPKGSAAVARAAGRPATADAADKAKACGGRKAPTYPVKESAGWIYIFPDETRPGSVEQHLDPVVIPEAVSPQFRCIQGSMDFKGGVDASVENMLDMLHISFVHSFGNQQDPTPFAVSYERGFDDPGTEALATSQVTFRYRSGSKSFSKVVGKSTEXGCVVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINK 544
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A836CFS0_9STRA (Rieske domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFS0_9STRA) HSP 1 Score: 375 bits (963), Expect = 3.680e-122 Identity = 179/285 (62.81%), Postives = 213/285 (74.74%), Query Frame = 1
Query: 10 VPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGTRSTASPSCGA----RKAPTYPVKELGGWIYIFPDETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPIN 852
VPNLWLAVGH SS+K +V KV VDG PIA+WR++TG L A+SD+CIHRGASLA+G + DRLVCPYHGFEF+ G L +MPG G RK Y V+E GWIY+FPD RPG++EQ+ +P I EA P FR VEGS+EI G AC+ENMLDLLHIS+VHSFGNL P PFEV Y YDD AL ++ VTFRY+SG KSFSKVVGKS EVVV+NE+HLPY AVIRV FGE+ +KTI A AVP+ G+TTLHWKLYRNF ++HP+D+GP+N
Sbjct: 153 VPNLWLAVGHMSSLKGKKVLKVTVDGKPIAIWRTSTGELKAISDICIHRGASLAKGWLHQDRLVCPYHGFEFDGHGTLQYMPGVTKEGVTKQGCSGSGRKTQAYLVREKNGWIYLFPDAARPGAIEQYSEPFTIAEASDPRFRYVEGSVEIGGDAAACMENMLDLLHISYVHSFGNLNSPVPFEVDYNHSYDD-ANGALASTSVTFRYKSGPKSFSKVVGKSPEVVVRNEYHLPYHAVIRVFFGEDCIKTIHAAAVPSEEGKTTLHWKLYRNFFMTHPMDQGPLN 436
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A4D9DEC4_9STRA (Rieske domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEC4_9STRA) HSP 1 Score: 295 bits (756), Expect = 7.060e-90 Identity = 141/284 (49.65%), Postives = 194/284 (68.31%), Query Frame = 1
Query: 7 RVPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGT-RSTASPSCGARKAPTYPVKELGGWIYIFPDETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPINK 855
+VPN WLAV H+SS+K E+KK+ VD PI L+R+A+G + A+SD+C+HR A+L+ G + D +VCPYH ++F+ +G+L ++PG + + + Y E GG IY+FPD R G++EQH P +IPE + P+FR VEG EI+ VEN+LD+LHIS+VHSFGN+QEP PF +Y+ +DD + L ++ TF+YR+G S SKVVG+ EVVV+NEFHLPY V RV FG++ +KTI AVP G T +H+KLYRNF HP DE P+NK
Sbjct: 264 KVPNTWLAVCHSSSLKKKELKKIWVDDKPICLFRAASGEVKAISDICLHRAAALSDGWLDGDLVVCPYHAYKFDGEGKLRYIPGVDEGMLAKNKRTARTVWYKTLEQGGLIYLFPDAMRAGAIEQHVKPFLIPEEVDPSFRVVEGVTEIKASANLVVENLLDMLHISYVHSFGNMQEPLPFSENYDYFFDDEASQLLPYARTTFKYRAGPTSISKVVGQVKEVVVENEFHLPYTTVTRVKFGKD-VKTIYVVAVPVEDGLTVVHYKLYRNFMYVHPQDESPVNK 546
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6U4DAF0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DAF0_9STRA) HSP 1 Score: 268 bits (686), Expect = 2.800e-82 Identity = 143/299 (47.83%), Postives = 189/299 (63.21%), Query Frame = 1
Query: 19 LWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLV-CPYHGFEFEADG---RLAHMPG-----TRSTASPSCGA-----RKAPTYPVKELGGWIYIFPDETRPGSVEQHR-----DPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDA--LMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPIN 852
+WL V H++ V + K +E+DG+PI +WR +G LSA+SDVCIHRGASLA+G + V CPYHGFE+E DG R A++ G T A G + +YPV+E GGWI +FP T + H +P+ PE +P FRA++GS++I G V A +EN+LD+LHIS+VH FGN QEP P Y YDDP + L + KV F Y +G +++SKVVG + V V+NEFHLPY A+IRVHF S KTI A+A+P T L++KLYRNFA++H DEGPIN
Sbjct: 238 VWLTVAHSADVPKMKTKLIEIDGIPIVVWRDQSGRLSALSDVCIHRGASLAKGWVSKSGCVACPYHGFEYEHDGALVRTANVMGRDEHETEQEAIDRIGRIPGDPPQTVSYPVREAGGWIQVFPRSTVEAFGQLHAPETVLEPLHYPELSTPGFRAIQGSVDINGSVDATMENVLDMLHISYVHLFGNAQEPLPISTDYSSSYDDPDPNRRLLKSGKVVFTYNAGPRAWSKVVGGADVVRVENEFHLPYTAIIRVHFS-GSTKTIVASALPLGKKRTRLNYKLYRNFAITHEKDEGPIN 535
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A7R9YCQ8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCQ8_9STRA) HSP 1 Score: 180 bits (457), Expect = 2.340e-52 Identity = 89/159 (55.97%), Postives = 114/159 (71.70%), Query Frame = 1
Query: 385 DPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDA--LMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPINK 855
DP+ PE + FRA+EG ++I G V A +EN+LDLLHIS+VH FGN QEP P + YDDP + + + KV F Y +GSK++SKVVG + V V+NEFHLPY A+IRVHFGE S KTI A+A P + +T L++KLYRNFA++HP DEGPINK
Sbjct: 2 DPLAYPEMIPEKFRAIEGGVDIEGSVEAVMENVLDLLHISYVHLFGNAQEPFPITTEFHTSYDDPHPNQRNIKSGKVVFTYNAGSKAWSKVVGGARIVRVENEFHLPYTAIIRVHFGE-STKTIVASATPVSAKKTRLNYKLYRNFAITHPKDEGPINK 159
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: D8LGX3_ECTSI (Rieske (2Fe-2S) domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX3_ECTSI) HSP 1 Score: 173 bits (439), Expect = 4.020e-46 Identity = 113/284 (39.79%), Postives = 123/284 (43.31%), Query Frame = 1
Query: 4 TRVPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKAPTYPVKELGGWIYIFPDETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLDEGPINK 855
TRVPNLWLAV H+S VKAGEVKKVEVDGVPIALWR++TG +SA SDVCIHRGASLARG I +DRLVCP ++VVVKNEFHLPYRAVIRV+FG NSLKTIEATAVP A GETTLHWKLYRNFA++HPLDEGPINK
Sbjct: 172 TRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCP--------------------------------------------------------------------------------------------------------------------------------------------------------SQVVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINK 303
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6C0FAQ2_9ZZZZ (Rieske domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FAQ2_9ZZZZ) HSP 1 Score: 163 bits (412), Expect = 2.210e-44 Identity = 101/280 (36.07%), Postives = 150/280 (53.57%), Query Frame = 1
Query: 10 VPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDR-LVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKAPTYPVKELGGWIYIFPD---ETRPGSVEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLD 837
+P W + + + + K+ +G PIA+++ ++A+SD+C+HR ASL+ G + S+ L CPYHG+E+ G + MPG T + G P + +K++ IYI P ++ G+ H I PEA P F V G I+ EN+LD++HIS+VHSFGN P PFE+ Y Q D+ ++ + TF Y +G S SK++G + V V+NEFHLP V RV + + KTI P E+ LH+ LYRNF + LD
Sbjct: 35 LPLFW-KIANKNEFPYNQPKRYLFNGYPIAVYKDYNNNITAISDICVHRSASLSNGKVLSNNCLQCPYHGWEYNK-GLVDLMPGFPDTKKNAFGV---PRFELKDINEDIYIRPTFDMNSQKGNYYNH-SVYIPPEANDPKFVRVSGVRHIKRPHNLVTENVLDMMHISYVHSFGNSLAPVPFEIEY-QDIDE------LSGRTTFYYTAGQNSMSKIIGGAKYVQVENEFHLPDMTVTRVKANQIT-KTIITHCYPVGKNESILHFDLYRNFFTTQFLD 300
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6C0AW45_9ZZZZ (Rieske domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AW45_9ZZZZ) HSP 1 Score: 157 bits (398), Expect = 2.190e-42 Identity = 92/252 (36.51%), Postives = 134/252 (53.17%), Query Frame = 1
Query: 91 PIALWRSATGVLSAVSDVCIHRGASLARGSIFSDR-LVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKAPTYPVKELGGWIYIFP-DETRPGSVEQHRDPVIIP-EALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNFALSHPLD 837
P+ ++R+ + A++D+C+HRGASL++G I + L CPYHG+++ DG + +PG + G + + V E IYI P + G E + + IP EA + + + GS +I EN+LD++H+SFVHSFGN P PF++ YE D G K F Y +G S S ++G S VVV+NEF+LP V RV + +KTI P E+ LH+ LYRNF S D
Sbjct: 52 PLCIYRNNDNKVIAINDICVHRGASLSQGKILPNNCLQCPYHGWQYN-DGIVQSIPGCPEKKMGTVGVNQ---FSVCEENSDIYIQPFQDINTGKGEHYNHSIYIPPEANNIGYTRISGSKKISRPASLVTENVLDMMHVSFVHSFGNSMSPVPFKIMYEDINDYSG-------KTIFHYTAGPTSMSSILGNSQFVVVENEFYLPDTTVTRVKANDQLIKTIVTHCYPIGKNESILHYDLYRNFMTSSLFD 292
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6C0DPW3_9ZZZZ (Rieske domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DPW3_9ZZZZ) HSP 1 Score: 153 bits (387), Expect = 2.010e-40 Identity = 93/266 (34.96%), Postives = 131/266 (49.25%), Query Frame = 1
Query: 22 WLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKAPTYPVKELGGWIYIFPDETRPGS-VEQHRDPVIIPEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGTDALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNF 816
W +G + KK + +WRS ++DVC H+GASL+ G I SD +VCPYHG+EF DG L+ +PG SP P Y V E GW+Y+ S E D I +S N V+ +M+ EN LD++HI+FVH+FGN Q+P P+ D P K T+ Y +G S ++ V ++V++NEF LP+ V RV FGE + T+ A+P ++ L K YRNF
Sbjct: 66 WYVIGKSIDFSVNIPKKARIWNTNYVVWRSENDTFIGLNDVCPHKGASLSGGKICSDYIVCPYHGYEFNTDGALSKVPGISFQPSP---IYDIPKYKVVEKNGWVYLNTRAINKSSEAEVFVDNFYIEPEVSANCSMVQLNMDYNCYSRILSENSLDVMHIAFVHTFGNAQKPGPYRE------DPPKLVGKNHYKTTYYYEAGEDSAARKVFGIKDLVIENEFILPHTTVARVIFGEY-VSTVITFALPLGDKKSRLFVKTYRNF 321
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Match: A0A6C0IFW7_9ZZZZ (Rieske domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IFW7_9ZZZZ) HSP 1 Score: 151 bits (381), Expect = 4.440e-39 Identity = 88/270 (32.59%), Postives = 137/270 (50.74%), Query Frame = 1
Query: 22 WLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIHRGASLARGSIFSDRLVCPYHGFEFEADGRLAHMPGTRSTASPSCGARKAPTYPVKELGGWIYIFPDETRPGSVEQHRDPVII--PEALSPNFRAVEGSMEIRGGVGACVENMLDLLHISFVHSFGNLQEPTPFEVSYEQGYDDPGT---DALMTSKVTFRYRSGSKSFSKVVGKSTEVVVKNEFHLPYRAVIRVHFGENSLKTIEATAVPTACGETTLHWKLYRNF 816
W +G + ++ K++V +WRS G L A+ D C HR ASL+ G I DR+ CPYHG+EF+ +G L +PG + T SC + + + E GW+Y+ + +H I PEA FR V M+ EN+LDL+HI F H+FGN+ P P +DP T D + + Y++ +++ +K + S V ++NEF LP+ + RV F + +KT+ A+ +P +T + K+YRNF
Sbjct: 117 WYVIGETTQFLPNKLHKIQVWDKLYVVWRSVEGHLHALQDTCSHRSASLSNGKIIHDRIACPYHGYEFDTNGTLVVVPGIQITKYVSCYS--VTKFDILEKNGWVYLNILPSNATDTTKHLLDTIYSEPEASRRMFRPVFLQMDYLCYSRVLSENILDLMHIPFTHTFGNIDHPAPIR-------EDPPTLLDDFPYHYQSRYLYKTSNQTIAKFIFGSEVVTIENEFILPHTTISRVIF-DKYVKTVVASVLPIGNNKTRMFTKVYRNF 376 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52888.12612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52888.12612.1 >prot_H-elongata_contig52888.12612.1 ID=prot_H-elongata_contig52888.12612.1|Name=mRNA_H-elongata_contig52888.12612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp ATRVPNLWLAVGHASSVKAGEVKKVEVDGVPIALWRSATGVLSAVSDVCIback to top mRNA from alignment at H-elongata_contig52888:227..2208- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52888.12612.1 ID=mRNA_H-elongata_contig52888.12612.1|Name=mRNA_H-elongata_contig52888.12612.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1982bp|location=Sequence derived from alignment at H-elongata_contig52888:227..2208- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52888:227..2208- >mRNA_H-elongata_contig52888.12612.1 ID=mRNA_H-elongata_contig52888.12612.1|Name=mRNA_H-elongata_contig52888.12612.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig52888:227..2208- (Himanthalia elongata Himel1 dioecious)back to top |