mRNA_H-elongata_contig52797.12596.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52797.12596.1
Unique NamemRNA_H-elongata_contig52797.12596.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: D8LFJ1_ECTSI (Nuclear pore complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ1_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 6.450e-55
Identity = 109/189 (57.67%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:    1 PNSSDEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLR-------KVMPLVGKDDMDEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEAD-----GALYNPGQGLWQDMCWKL 531
            PN+SDE V+ +MR RDAEFRR E VVEWLQ    +RL+ L        G  LGWS TLE LA+GG  Q SE++QMHPDA+LR       KVM LVG+DD+DEE L+R+ W LVRAG L  AKRLCE RGQPWRAAAMAGG +VG R        V EG + R   +     GALY+PGQGLWQ+MCW+L
Sbjct:  277 PNASDEAVLVSMRARDAEFRRTEAVVEWLQGATHTRLNALGLGGGEGEGH-LGWSDTLESLAVGG-GQKSEVAQMHPDANLRSVSRGGLKVMRLVGQDDLDEENLLRSAWALVRAGRLSAAKRLCERRGQPWRAAAMAGGGVVGTR--------VMEGEEERELEEIEAGYGALYSPGQGLWQEMCWQL 455
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BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A6H5K9Z7_9PHAE (Nuclear pore complex protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z7_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.330e-53
Identity = 108/189 (57.14%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:    1 PNSSDEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLR-------KVMPLVGKDDMDEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEAD-----GALYNPGQGLWQDMCWKL 531
            P++SDE ++ +MR RDAEFRR E VVEWLQ    +RL+ L     V  G  LGWS TLE LA GG  Q SE++QMHPDA+LR       KVM LVG+DD+DEE L+R+ W LVRAG L  AKRLCE RGQPWRAAAMAGG +VG R        V EG + R   +     GALY+PGQGLWQ+MCW+L
Sbjct:  276 PDASDEALLVSMRARDAEFRRTEAVVEWLQGATHTRLNALGLGGGVGEGH-LGWSDTLESLAAGG-GQKSEVAQMHPDANLRSVSRGGLKVMRLVGQDDLDEENLLRSAWALVRAGRLSAAKRLCEKRGQPWRAAAMAGGGVVGTR--------VMEGEEERELEEIEAGYGALYSPGQGLWQEMCWQL 454
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BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A1Y1IEG8_KLENI (Nuclear pore complex protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEG8_KLENI)

HSP 1 Score: 87.0 bits (214), Expect = 1.490e-16
Identity = 63/193 (32.64%), Postives = 92/193 (47.67%), Query Frame = 1 
Query:    1 PNSSDEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALG--------WSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDMDEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGG-------ALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQG----LWQDMC 522
            P +S +E  C    +DA  +    VV+WL+D+   ++D        R GG  G        W  T + L       S+ +S + PDA  R+ + L  +D  DEE L+R VW L++AG L DA++LC D GQ WRAA++ G        ++ G RG++        G KR  E   A    G+G    LW+  C
Sbjct:  177 PPTSQQEA-CEYALQDARAQACMRVVQWLEDLAGQQVD----RDEKRHGGYAGLLRHSQGVWVRTAQALKSSQRPPSNLVSHVDPDAPTRENLRLHPQDSEDEELLMRGVWTLLKAGRLSDARQLCRDVGQAWRAASLGGTGDAGPVPSVEGFRGLT--------GTKRAREEQAAEIEAGRGRQRRLWKWTC 356
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BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A0P1A4E4_PLAHL (Nuclear pore complex protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A4E4_PLAHL)

HSP 1 Score: 84.3 bits (207), Expect = 1.290e-15
Identity = 59/174 (33.91%), Postives = 83/174 (47.70%), Query Frame = 1 
Query:   13 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQGLWQDMCWKL 531
            +++ V  + TR   FR        +Q  VK  L+ +A    V  GG  G S +     L        +  M PDA +R     V +DD+ DE EL++ +W+ VRAG + DA  LC   GQ WRAA+++GG  VG            E  +RRN +     NP + LW+ MCW L
Sbjct:  390 EDDAVRLLETRSETFR--------IQRAVKMWLESMALEKTVNLGGKRGTSGSRTLRMLKRQELKKNVVYMDPDAVVRDGDAQVSQDDLEDEAELMKALWLYVRAGRMDDAVDLCIRLGQSWRAASLSGGHPVG----------ASESNERRNLSLERWGNPLRALWKSMCWLL 545
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BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A3M6V9N4_9STRA (Nuclear pore complex protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9N4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.110e-14
Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = 1 
Query:   13 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQGLWQDMCWKL 531
            +++ V  + TR+  F+  + V+ WL+ +      +++      + GA G S TL  +       S E   M PDA LR     +  DDM DE EL++ VW+ +RAG + DA  LC   GQPWRAA+++GG  VG    +  E+   E             NP + LW+ MCW+L
Sbjct:  367 EDDAVRLLETRNETFKVQKAVMAWLESIALESTLNISD-----KRGASG-SRTLRMMRK--NVFSGEGINMDPDAVLRDGDDRILPDDMEDEAELMKAVWLFIRAGRMSDAIDLCIRSGQPWRAASLSGGNFVGASETNEREDLQVE----------RWGNPLRVLWKSMCWRL 522
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BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: K3WKE9_GLOUD (Nuclear pore complex protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKE9_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 3.790e-14
Identity = 52/174 (29.89%), Postives = 86/174 (49.43%), Query Frame = 1 
Query:   13 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQGLWQDMCWKL 531
            +++ +  + TR+  F+    V  WL+ +   +      A   +RG     S TL+ +         E+  + PDA LR+    + +DD  DE EL+++VW+ +RAG + DA  LC   GQ WRAA+++GG  +G            E ++R++ A     NP + LW+  CWK 
Sbjct:  390 EDDAIRLLETRNENFKIQSVVKTWLETIALEK----TVAISEKRG--TSGSRTLKLMKK-NLINKEEVVHLDPDAMLREGDEFILEDDAEDEAELMKSVWLFIRAGKISDAVDLCIRLGQSWRAASLSGGTPLG----------ASESSERKDMALDRWGNPFRALWKTTCWKF 546
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BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A8J5XU59_DIALT (Nuclear pore complex protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU59_DIALT)

HSP 1 Score: 77.0 bits (188), Expect = 4.360e-13
Identity = 55/182 (30.22%), Postives = 84/182 (46.15%), Query Frame = 1 
Query:    7 SSDEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDMDEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGI----------SYVEEYVHEGAKRRNEADGALYNPGQGLWQDMC 522
            + ++ +V A+   D+    A   V+WL+ V   R++ +   A  R         TL  LA         +S++  DA  R+ +PL  +D  DE  L+   W LVRAG L +A+RLC++ GQPWRAA + GG L   R +          + +      GA      D    NP +G+W + C
Sbjct:  113 ADEQSIVDALFEADSALAIARATVQWLESVAYERVEFVRTDAFHRN--------TLFRLAA-RIETDGIVSEVDADAPDRQRLPLDPEDATDEAGLLAAAWQLVRAGRLDEAQRLCDECGQPWRAATLDGGQLWQRRSVPAERIGGALCAQLGAGADAGADAAGTVDAWAGNPHRGVWLESC 285
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BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: H3H5G1_PHYRM (Nuclear pore complex protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5G1_PHYRM)

HSP 1 Score: 76.6 bits (187), Expect = 5.970e-13
Identity = 56/174 (32.18%), Postives = 84/174 (48.28%), Query Frame = 1 
Query:   13 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQGLWQDMCWKL 531
            +++ V  + TR+  ++    V  WL+ +    L+D    +  R  G    S TL  +   G     ++  M PDA LR     +  DD  DE EL++ VW+ VRAG + DA  LC   GQ WRAA+++GG  VG            E  +R + +     NP + LW+ MCW+L
Sbjct:  337 EDDAVRLLETRNETYKIQRAVKAWLESMA---LEDTISISDKRGAGG---SRTLRMMRKQGFPVDDDV-HMDPDAVLRDGDDHILPDDTEDEAELMKAVWLYVRAGRMDDAIDLCIRLGQSWRAASLSGGNPVG----------ASESNEREDLSLERWGNPFRALWKSMCWRL 493
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BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: M4BR63_HYAAE (Nuclear pore complex protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BR63_HYAAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.160e-13
Identity = 57/178 (32.02%), Postives = 85/178 (47.75%), Query Frame = 1 
Query:   13 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALY----NPGQGLWQDMCWKL 531
            +++ V  +  ++  F+  + V  WL+ +       ++     +RG     S TL  +   G A   E  Q+ PDA LR     +  DDM DE EL++ VW+ VRAG + DA  LC   GQ WRAA+++GG+ VG                  NE DG       NP + LW+ +CW+L
Sbjct:  384 EDDAVRLLEAQNESFKVQKAVKAWLESMALENTITISD----KRG--TSGSRTLTMMRKQGFA--GENVQLDPDAVLRDGDDHILPDDMEDEAELLKAVWLYVRAGRMVDATDLCIRLGQSWRAASLSGGSSVG--------------VSETNERDGLSLERWGNPLRALWKSLCWRL 539
[Close]
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A3R7H3V8_9STRA (Nuclear pore complex protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H3V8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.720e-12
Identity = 54/180 (30.00%), Postives = 89/180 (49.44%), Query Frame = 1 
Query:   13 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQGLWQDMCWKLRWEENG 549
            D++ V  +  R+  F+  + V  WL+ +      +++     +RG   G S TL+++    T    +  QM PDA LR     +  DD  DE EL++ VW+ +RAG + +A  LC   G+ WRAA+++GG   G            E  +R++ +     NP + LW+ MCW+L  +  G
Sbjct:  215 DDDAVRLLEIRNETFKIQKAVKAWLESMALESTINISD----KRGA--GGSRTLKFMRK-QTFPGDDQIQMDPDAVLRSGDSHILPDDTEDEAELMKAVWLFIRAGRVDEAIDLCIRLGESWRAASLSGGNPAG----------ASETNERQDLSLERWGNPFRALWKSMCWRLSEQATG 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFJ1_ECTSI6.450e-5557.67Nuclear pore complex protein n=1 Tax=Ectocarpus si... [more]
A0A6H5K9Z7_9PHAE1.330e-5357.14Nuclear pore complex protein n=1 Tax=Ectocarpus sp... [more]
A0A1Y1IEG8_KLENI1.490e-1632.64Nuclear pore complex protein n=1 Tax=Klebsormidium... [more]
A0A0P1A4E4_PLAHL1.290e-1533.91Nuclear pore complex protein n=1 Tax=Plasmopara ha... [more]
A0A3M6V9N4_9STRA1.110e-1433.33Nuclear pore complex protein n=1 Tax=Peronospora e... [more]
K3WKE9_GLOUD3.790e-1429.89Nuclear pore complex protein n=1 Tax=Globisporangi... [more]
A0A8J5XU59_DIALT4.360e-1330.22Nuclear pore complex protein n=2 Tax=Diacronema lu... [more]
H3H5G1_PHYRM5.970e-1332.18Nuclear pore complex protein n=1 Tax=Phytophthora ... [more]
M4BR63_HYAAE8.160e-1332.02Nuclear pore complex protein n=1 Tax=Hyaloperonosp... [more]
A0A3R7H3V8_9STRA2.720e-1230.00Nuclear pore complex protein n=3 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52797contigH-elongata_contig52797:3093..3698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.1
Seed ortholog evalue1.5e-47
Seed eggNOG ortholog2880.D8LFJ1
Preferred nameNUP107
KEGG koko:K12816,ko:K14301
KEGG TC1.I.1
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00355,M00427
GOsGO:0000003,GO:0000280,GO:0000724,GO:0000725,GO:0000910,GO:0000972,GO:0000973,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006406,GO:0006407,GO:0006606,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0006999,GO:0007049,GO:0007088,GO:0007110,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008585,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010965,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016458,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0030154,GO:0030466,GO:0030703,GO:0031080,GO:0031081,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031990,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033206,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034399,GO:0034501,GO:0034502,GO:0034504,GO:0034508,GO:0034605,GO:0034613,GO:0034622,GO:0034629,GO:0034641,GO:0035392,GO:0040029,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046545,GO:0046660,GO:0046907,GO:0046931,GO:0048137,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051029,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051292,GO:0051301,GO:0051321,GO:0051382,GO:0051383,GO:0051640,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0060255,GO:0060341,GO:0061458,GO:0061640,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071427,GO:0071428,GO:0071459,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0072594,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090304,GO:0097064,GO:0097298,GO:0140013,GO:1900037,GO:1900180,GO:1900182,GO:1901360,GO:1902679,GO:1902680,GO:1903046,GO:1903506,GO:1903507,GO:1903508,GO:1903827,GO:1903829,GO:1905818,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
EggNOG OGsKOG1964@1,KOG1964@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930862.09198-CDS-H-elongata_contig52797:3092..33411622930862.09198-CDS-H-elongata_contig52797:3092..3341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52797 3093..3341 +
1691679602.0138614-CDS-H-elongata_contig52797:3092..33411691679602.0138614-CDS-H-elongata_contig52797:3092..3341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52797 3093..3341 +
1622930862.1100938-CDS-H-elongata_contig52797:3389..36981622930862.1100938-CDS-H-elongata_contig52797:3389..3698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52797 3390..3698 +
1691679602.0262501-CDS-H-elongata_contig52797:3389..36981691679602.0262501-CDS-H-elongata_contig52797:3389..3698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52797 3390..3698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52797.12596.1prot_H-elongata_contig52797.12596.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52797 3093..3698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52797.12596.1

>prot_H-elongata_contig52797.12596.1 ID=prot_H-elongata_contig52797.12596.1|Name=mRNA_H-elongata_contig52797.12596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
PNSSDEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGG
ALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDMDEEELVR
TVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHE
GAKRRNEADGALYNPGQGLWQDMCWKLRWEENGRSR
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mRNA from alignment at H-elongata_contig52797:3093..3698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52797.12596.1 ID=mRNA_H-elongata_contig52797.12596.1|Name=mRNA_H-elongata_contig52797.12596.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig52797:3093..3698+ (Himanthalia elongata Himel1 dioecious)
CCCAATTCTTCGGATGAAGAAGTTGTCTGCGCCATGCGCACCAGGGACGC
AGAGTTCCGCCGGGCAGAGCACGTGGTGGAGTGGCTCCAGGACGTGGTGA
AGTCGCGGCTGGACGACCTCGCTCCCGCCGCACGGGTGAGGCGTGGGGGC
GCTCTCGGGTGGAGCGCCACGCTCGAGTACCTCGCTCTGGGCGGGACCGC
GCAGTCGAGCGAGATCTCGCAGATGCATCCGGACGCTAGCCTCCGCAAGG
TTGGTATTTGCGGTGACGTCGCGGGGGGCGTCGTAAACGCTCTGAAGGTT
ATGCCCCTCGTCGGGAAGGACGATATGGACGAGGAGGAGCTCGTACGCAC
CGTGTGGGTGCTGGTCCGCGCCGGGTTGCTAGGCGATGCGAAGCGGTTGT
GCGAGGACAGGGGGCAACCGTGGCGGGCGGCAGCCATGGCCGGTGGTGCG
TTGGTTGGGTGCCGAGGGATAAGCTACGTTGAGGAGTATGTTCACGAGGG
GGCCAAGCGGAGGAATGAGGCAGACGGCGCTCTCTACAACCCCGGGCAAG
GGCTCTGGCAGGACATGTGCTGGAAGTTGAGGTGGGAGGAAAACGGACGA
TCGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig52797:3093..3698+

>mRNA_H-elongata_contig52797.12596.1 ID=mRNA_H-elongata_contig52797.12596.1|Name=mRNA_H-elongata_contig52797.12596.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig52797:3093..3698+ (Himanthalia elongata Himel1 dioecious)
CCCAATTCTTCGGATGAAGAAGTTGTCTGCGCCATGCGCACCAGGGACGC
AGAGTTCCGCCGGGCAGAGCACGTGGTGGAGTGGCTCCAGGACGTGGTGA
AGTCGCGGCTGGACGACCTCGCTCCCGCCGCACGGGTGAGGCGTGGGGGC
GCTCTCGGGTGGAGCGCCACGCTCGAGTACCTCGCTCTGGGCGGGACCGC
GCAGTCGAGCGAGATCTCGCAGATGCATCCGGACGCTAGCCTCCGCAAGC
CCAATTCTTCGGATGAAGAAGTTGTCTGCGCCATGCGCACCAGGGACGCA
GAGTTCCGCCGGGCAGAGCACGTGGTGGAGTGGCTCCAGGACGTGGTGAA
GTCGCGGCTGGACGACCTCGCTCCCGCCGCACGGGTGAGGCGTGGGGGCG
CTCTCGGGTGGAGCGCCACGCTCGAGTACCTCGCTCTGGGCGGGACCGCG
CAGTCGAGCGAGATCTCGCAGATGCATCCGGACGCTAGCCTCCGCAAGGT
TATGCCCCTCGTCGGGAAGGACGATATGGACGAGGAGGAGCTCGTACGCA
CCGTGTGGGTGCTGGTCCGCGCCGGGTTGCTAGGCGATGCGAAGCGGTTG
TGCGAGGACAGGGGGCAACCGTGGCGGGCGGCAGCCATGGCCGGTGGTGC
GTTGGTTGGGTGCCGAGGGATAAGCTACGTTGAGGAGTATGTTCACGAGG
GGGCCAAGCGGAGGAATGAGGCAGACGGCGCTCTCTACAACCCCGGGCAA
GGGCTCTGGCAGGACATGTGCTGGAAGTTGAGGTGGGAGGAAAACGGACG
ATCGCGGGTTATGCCCCTCGTCGGGAAGGACGATATGGACGAGGAGGAGC
TCGTACGCACCGTGTGGGTGCTGGTCCGCGCCGGGTTGCTAGGCGATGCG
AAGCGGTTGTGCGAGGACAGGGGGCAACCGTGGCGGGCGGCAGCCATGGC
CGGTGGTGCGTTGGTTGGGTGCCGAGGGATAAGCTACGTTGAGGAGTATG
TTCACGAGGGGGCCAAGCGGAGGAATGAGGCAGACGGCGCTCTCTACAAC
CCCGGGCAAGGGCTCTGGCAGGACATGTGCTGGAAGTTGAGGTGGGAGGA
AAACGGACGATCGCGG
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