prot_H-elongata_contig5267.12580.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5267.12580.1
Unique Nameprot_H-elongata_contig5267.12580.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length167
Homology
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BLAST of mRNA_H-elongata_contig5267.12580.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.430e-24
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 0 
Query:   15 EQALASYKCAVRARPRFISAWREISACYHILGHFHASVVALDCGLRAAG---FNDEGVVGP-----AAAAPLHLQSAANKLFL-PGRAKEGLRSVEEAFRAGRGGVVGYILRGLLNTRLGKGTLAKQAFGKAKE--LEPTIADFIDAI 151
            E A+  YK A+R +PR +  WRE++ACY +    HA+  AL+CG +AAG     D    G      A AAPL+LQ AA  L + PG    GL +V +AFR G+GG VG++LRGLLN+ LGK +LA  +F KA++  L+P +A   D +
Sbjct: 1548 EDAIKRYKLALREQPRALVGWRELAACYELSNQHHAAAAALECGAQAAGPADSVDSSSSGKRRSVSATAAPLYLQMAAGTLMMSPGEEDAGLAAVGDAFRLGKGGAVGHVLRGLLNSGLGKDSLAAGSFAKARDAGLDPAVAALADKV 1695
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BLAST of mRNA_H-elongata_contig5267.12580.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.450e-22
Identity = 63/148 (42.57%), Postives = 87/148 (58.78%), Query Frame = 0 
Query:   15 EQALASYKCAVRARPRFISAWREISACYHILGHFHASVVALDCGLRAAGFNDEGVVGP--------AAAAPLHLQSAANKLFL-PGRAKEGLRSVEEAFRAGRGGVVGYILRGLLNTRLGKGTLAKQAFGKAKE--LEPTIADFIDAI 151
            E A+  YK A+R  PR +  WRE++ CY +    +A+  AL+CG +AAG    G            A AAPL+LQ AA  L + PG    GL +V +AFR G+GG VG++LRGLL + LGK +LA  +F KA+E  L+P +A   D +
Sbjct: 1156 EDAIKRYKLALREEPRALVGWRELAVCYQLSNQHNAATAALECGAQAAGPAGSGDCASSGKRRSVSATAAPLYLQLAAGTLMMSPGEEDAGLAAVGDAFRLGKGGAVGHVLRGLLYSGLGKDSLAAGSFSKAREAGLDPAVAALADKV 1303
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5267.12580.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G059_ECTSI1.430e-2444.59Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A6H5JG00_9PHAE1.450e-2242.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 6..162
e-value: 7.0E-8
score: 33.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 15..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5267contigH-elongata_contig5267:8860..9360 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5267.12580.1mRNA_H-elongata_contig5267.12580.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5267 8160..9360 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5267.12580.1 ID=prot_H-elongata_contig5267.12580.1|Name=mRNA_H-elongata_contig5267.12580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
LAAARTSLCARRAGEQALASYKCAVRARPRFISAWREISACYHILGHFHA
SVVALDCGLRAAGFNDEGVVGPAAAAPLHLQSAANKLFLPGRAKEGLRSV
EEAFRAGRGGVVGYILRGLLNTRLGKGTLAKQAFGKAKELEPTIADFIDA
IAAASVQAQGSASSAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf