mRNA_H-elongata_contig52647.12576.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52647.12576.1
Unique NamemRNA_H-elongata_contig52647.12576.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52647.12576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52647contigH-elongata_contig52647:747..1634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-22_001730.1
Exons2
Model size258
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.0629535-CDS-H-elongata_contig52647:747..9571622930860.0629535-CDS-H-elongata_contig52647:747..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52647 748..957 -
1691679601.1946037-CDS-H-elongata_contig52647:747..9571691679601.1946037-CDS-H-elongata_contig52647:747..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52647 748..957 -
1622930860.0848892-CDS-H-elongata_contig52647:1589..16341622930860.0848892-CDS-H-elongata_contig52647:1589..1634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52647 1590..1634 -
1691679601.2065687-CDS-H-elongata_contig52647:1589..16341691679601.2065687-CDS-H-elongata_contig52647:1589..1634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52647 1590..1634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52647.12576.1prot_H-elongata_contig52647.12576.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52647 748..1634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52647.12576.1

>prot_H-elongata_contig52647.12576.1 ID=prot_H-elongata_contig52647.12576.1|Name=mRNA_H-elongata_contig52647.12576.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
LGLADNEDHPLVRHKLHAVTHPDLEAPLLLASQLLVQVALTVALKRLTDN
PASWGYEDHHAASAIPSAARTPVVTAADAPDPGSR
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mRNA from alignment at H-elongata_contig52647:747..1634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52647.12576.1 ID=mRNA_H-elongata_contig52647.12576.1|Name=mRNA_H-elongata_contig52647.12576.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=888bp|location=Sequence derived from alignment at H-elongata_contig52647:747..1634- (Himanthalia elongata Himel1 dioecious)
CTCGGACTGGCGGACAACGAGGACCACCCTCTCGTCAGACACAAGGTTCT
GGTTTCATGGCGCTCAAATTATCATGTCGGCGACGGCCATGTCTACATTA
CATTGGTGGTATCGAGGGTTATCAAGGAAATAGTAAAAATAGGCATGTAT
CTCTTTCTGCTTCCCTTTCGGAGTGTGCTTTTAAAGCTTTAATTTGTGTG
CAGAGAACAGGGTGTATTGTGAAAACTTGATCCCCGATTCGTACGTGCTG
GTAAGGTTTCCAAAATGGACACACAATGTCCTCGATGGCAGAACTTATAA
TCATCAGCCTAGTGAGAGCTCCTCACCTCGCGAGAGGTTTTACAGGGCCT
GGTGCCGCCCCCAAGACTATCTCCTAGGAGACCTATTCAAATTAGTGTCG
GTGGTAGGACCACAGGGGAATTTTTTACGTCATTAGTTTTCTGCCGATGG
GGCGCAATTCAACAACCTATAAATAGGTTACACACCAACCCCACTTACTG
CTGCAACGCTGCATTGCCCATCCCGTCCGTGGGCTCAGGGAATCCTCATG
GCCAGGCTATTTTCCGTTAATATCGTGCGATGTATAAGCCCCCTGTATAC
TGCAGATTATCTCTCAACTTCCTCCCACCTCCCTCCCGTGCCCCCCCCTC
GATAATGTATCGCCTCGCGCGTCCCAGCTCCACGCCGTCACCCACCCCGA
TCTAGAAGCTCCTTTGCTCCTGGCCTCGCAGCTGCTGGTCCAAGTCGCTC
TCACGGTCGCCCTTAAGCGTCTCACAGATAATCCCGCCTCGTGGGGATAT
GAGGATCATCATGCCGCCAGCGCGATCCCCTCCGCTGCGCGTACGCCCGT
CGTTACCGCCGCTGACGCTCCAGATCCCGGCAGTAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig52647:747..1634-

>mRNA_H-elongata_contig52647.12576.1 ID=mRNA_H-elongata_contig52647.12576.1|Name=mRNA_H-elongata_contig52647.12576.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig52647:747..1634- (Himanthalia elongata Himel1 dioecious)
CTCGGACTGGCGGACAACGAGGACCACCCTCTCGTCAGACACAAGCTCGG
ACTGGCGGACAACGAGGACCACCCTCTCGTCAGACACAAGCTCCACGCCG
TCACCCACCCCGATCTAGAAGCTCCTTTGCTCCTGGCCTCGCAGCTGCTG
GTCCAAGTCGCTCTCACGGTCGCCCTTAAGCGTCTCACAGATAATCCCGC
CTCGTGGGGATATGAGGATCATCATGCCGCCAGCGCGATCCCCTCCGCTG
CGCGTACGCCCGTCGTTACCGCCGCTGACGCTCCAGATCCCGGCAGTAGA
CTCCACGCCGTCACCCACCCCGATCTAGAAGCTCCTTTGCTCCTGGCCTC
GCAGCTGCTGGTCCAAGTCGCTCTCACGGTCGCCCTTAAGCGTCTCACAG
ATAATCCCGCCTCGTGGGGATATGAGGATCATCATGCCGCCAGCGCGATC
CCCTCCGCTGCGCGTACGCCCGTCGTTACCGCCGCTGACGCTCCAGATCC
CGGCAGTAGA
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