prot_H-elongata_contig52637.12573.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52637.12573.1
Unique Nameprot_H-elongata_contig52637.12573.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length70
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 2..68
e-value: 2.2E-8
score: 34.3
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..69
score: 9.676
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..69
e-value: 4.1E-8
score: 34.7
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52637contigH-elongata_contig52637:2918..3127 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52637.12573.1mRNA_H-elongata_contig52637.12573.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52637 2918..3142 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52637.12573.1 ID=prot_H-elongata_contig52637.12573.1|Name=mRNA_H-elongata_contig52637.12573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MFVDSASCFQRPYGTWDKSVSVIFDVVKRFVAGMGIPRAFRTDNGAESTN
STVADYCNCLGIRHELTAL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf