mRNA_H-elongata_contig5252.12555.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: D8LTL7_ECTSI (Heavy metal translocating P-type ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL7_ECTSI) HSP 1 Score: 289 bits (740), Expect = 5.100e-87 Identity = 152/202 (75.25%), Postives = 172/202 (85.15%), Query Frame = 1
Query: 1 EPTVDGFQATPGMGVSCTVVHPGAGTKIDASSRGDSRPSRGDLVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
EP V+GFQ+TPGMGVSCT+V G+ + + S+GDLVLVG+R+WL RH V IPPE+E A+SLEWQGKTVVFVAGGG+ KG+LAVAD RPEAREAV +LH MGISVW++TGDNRATAEAVAA G+PRGKV+A VLPADK+RKVQELQ MG+AVAMVGDGVNDSPALA ADVGIAVGAGTQVAVEAADMVLVRS
Sbjct: 1027 EPAVEGFQSTPGMGVSCTIVKDRGGSASGTTGERHRKMSKGDLVLVGSRTWLSRHHVRIPPEIEGHAASLEWQGKTVVFVAGGGETKGVLAVADSVRPEAREAVGTLHRMGISVWVVTGDNRATAEAVAAIVGIPRGKVMAGVLPADKSRKVQELQRMGQAVAMVGDGVNDSPALAMADVGIAVGAGTQVAVEAADMVLVRS 1228
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: UPI00148706A4 (copper-transporting ATPase 2 n=1 Tax=Arvicanthis niloticus TaxID=61156 RepID=UPI00148706A4) HSP 1 Score: 172 bits (437), Expect = 4.360e-46 Identity = 100/209 (47.85%), Postives = 135/209 (64.59%), Query Frame = 1
Query: 19 FQATPGMGVSCTV-------------VHPGAGTKIDASSRGDSRPSRGDLVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
FQA PG G+SC V HP +D+ G+ S+ VL+G R W+RR+G++I ++ + + E +G+T + VA G G++A+AD +PEA A+ +L SMG+ V +ITGDNR TA A+A G+ KV A VLP+ K KVQELQ+ G+ VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1105 FQAVPGCGISCKVSNVESILAHSDLTAHPAG---VDSPPTGEGTGSQAFSVLIGNREWMRRNGLTISSDISDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKPEAALAIYTLKSMGVDVALITGDNRKTARAIATQVGI--NKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADVVLIRN 1308
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A836CEY3_9STRA (Putative copper-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY3_9STRA) HSP 1 Score: 171 bits (434), Expect = 1.080e-45 Identity = 103/204 (50.49%), Postives = 135/204 (66.18%), Query Frame = 1
Query: 4 PTVDGFQATPGMGVSCTVVHPGAGTKIDASSRGDSRPSRGDLVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMG---ISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
P VD F+ P G S + G G + A+ G + +G VLVG R+W+ + V + E + +LE +GKT + VA G + G+LAVAD+ + EA VA+L MG I VW++TGDN TA ++ G+P +++A VLPA KARKV+ELQSMG VAMVGDG+NDSPALA ADVGIA+GAGTQVA+EAA MVLVR+
Sbjct: 862 PAVDNFEVRPAGGGSEGMDKEGGGRHV-AAGMGVACMYQGTRVLVGNRAWMAANSVKVSKVEEKTTVALEEEGKTAMLVAMGQQLIGVLAVADQVKREAASTVAALQHMGLKAIHVWMVTGDNSRTARSLGRNLGIPAERIVAEVLPAHKARKVRELQSMGEVVAMVGDGINDSPALAAADVGIAIGAGTQVAIEAAQMVLVRN 1064
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3UAC7_CATUS (P-type Cu(+) transporter n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3UAC7_CATUS) HSP 1 Score: 171 bits (434), Expect = 1.090e-45 Identity = 105/206 (50.97%), Postives = 139/206 (67.48%), Query Frame = 1
Query: 19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGDL--VLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
FQA PG G+SC V V GT K+DA+ GDS PS VL+G R W+RR+G++I ++ + ++ E +G+T + VA G G++A+AD + EA AV +L SMGI V ++TGDNR TA+A+A G+ KV A VLP+ K KVQELQ+ + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1003 FQAVPGCGISCKVEGVEAILGTAEEGPNKLDANRSGDSSPSASQKYSVLIGNREWMRRNGLNITNDVNDAMTNHEMKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLQSMGIDVVLLTGDNRKTAKAIATQVGIR--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRN 1206
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3Y0T2_CATUS (P-type Cu(+) transporter n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3Y0T2_CATUS) HSP 1 Score: 171 bits (434), Expect = 1.100e-45 Identity = 105/206 (50.97%), Postives = 139/206 (67.48%), Query Frame = 1
Query: 19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGDL--VLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
FQA PG G+SC V V GT K+DA+ GDS PS VL+G R W+RR+G++I ++ + ++ E +G+T + VA G G++A+AD + EA AV +L SMGI V ++TGDNR TA+A+A G+ KV A VLP+ K KVQELQ+ + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1081 FQAVPGCGISCKVEGVEAILGTAEEGPNKLDANRSGDSSPSASQKYSVLIGNREWMRRNGLNITNDVNDAMTNHEMKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLQSMGIDVVLLTGDNRKTAKAIATQVGIR--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRN 1284
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3U9K2_CATUS (P-type Cu(+) transporter n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3U9K2_CATUS) HSP 1 Score: 171 bits (434), Expect = 1.100e-45 Identity = 105/206 (50.97%), Postives = 139/206 (67.48%), Query Frame = 1
Query: 19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGDL--VLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
FQA PG G+SC V V GT K+DA+ GDS PS VL+G R W+RR+G++I ++ + ++ E +G+T + VA G G++A+AD + EA AV +L SMGI V ++TGDNR TA+A+A G+ KV A VLP+ K KVQELQ+ + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1091 FQAVPGCGISCKVEGVEAILGTAEEGPNKLDANRSGDSSPSASQKYSVLIGNREWMRRNGLNITNDVNDAMTNHEMKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLQSMGIDVVLLTGDNRKTAKAIATQVGIR--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRN 1294
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8D0AVE0_SANLU (P-type Cu(+) transporter n=2 Tax=Eupercaria TaxID=1489922 RepID=A0A8D0AVE0_SANLU) HSP 1 Score: 171 bits (432), Expect = 1.990e-45 Identity = 111/219 (50.68%), Postives = 140/219 (63.93%), Query Frame = 1
Query: 19 FQATPGMGVSCTVVH---------------PGAGTKIDASSRGDSRPSRGD--------LVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
FQA PG G+SC V + PGA T D SS SRP D VL+G R W+RR+G I +++++ SS E +G+T + VA G +LA+AD +PE+ AV +L+SMGI V +ITGDNR TA+A+AA G+ KV A VLP+ K KVQELQ GR VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 910 FQAVPGCGISCRVSNVEHLLQQQSEERFLLPGATT--DESSLLSSRPVISDDYSVPMSYSVLIGNREWMRRNGHHIGADVDAAMSSHETKGQTAILVAIEGVLCAMLAIADTVKPESALAVFTLNSMGIEVVMITGDNRRTAKAIAAQVGIR--KVFAEVLPSHKVAKVQELQEQGRRVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADIVLIRN 1124
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3Y1M8_CATUS (P-type Cu(+) transporter n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3Y1M8_CATUS) HSP 1 Score: 171 bits (432), Expect = 2.040e-45 Identity = 105/208 (50.48%), Postives = 140/208 (67.31%), Query Frame = 1
Query: 19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGD----LVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
FQA PG G+SC V V GT K+DA+ GDS + GD VL+G R W+RR+G++I ++ + ++ E +G+T + VA G G++A+AD + EA AV +L SMGI V ++TGDNR TA+A+A G+ KV A VLP+ K KVQELQ+ + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1072 FQAVPGCGISCKVEGVEAILGTAEEGPNKLDANRSGDSSAALGDNAKYSVLIGNREWMRRNGLNITNDVNDAMTNHEMKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLQSMGIDVVLLTGDNRKTAKAIATQVGIR--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRN 1277
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3MIC5_GEOPR (P-type Cu(+) transporter n=1 Tax=Geospiza parvula TaxID=87175 RepID=A0A8C3MIC5_GEOPR) HSP 1 Score: 170 bits (430), Expect = 3.780e-45 Identity = 105/208 (50.48%), Postives = 138/208 (66.35%), Query Frame = 1
Query: 19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGD----LVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
FQA PG G+SC V V GT K+DA+ GDS GD VL+G R W+RR+G++I ++ + ++ E +G+T + A G G++A+AD + EA AV +L SMGI V +ITGDNR TA+A+A G+ KV A VLP+ K KVQELQ+ + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1047 FQAVPGCGISCKVGGVEAILGTAEEAPNKLDANRTGDSSAPLGDNGKYSVLIGNREWMRRNGLNIANDVNDAMTNHEMKGQTAILAAIDGALCGMIAIADTVKQEAALAVHTLQSMGIDVVLITGDNRKTAKAIATQVGIK--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALAKADVGIAIGTGTDVAIEAADVVLIRN 1252
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3MKR1_GEOPR (P-type Cu(+) transporter n=1 Tax=Geospiza parvula TaxID=87175 RepID=A0A8C3MKR1_GEOPR) HSP 1 Score: 170 bits (430), Expect = 3.780e-45 Identity = 105/208 (50.48%), Postives = 138/208 (66.35%), Query Frame = 1
Query: 19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGD----LVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
FQA PG G+SC V V GT K+DA+ GDS GD VL+G R W+RR+G++I ++ + ++ E +G+T + A G G++A+AD + EA AV +L SMGI V +ITGDNR TA+A+A G+ KV A VLP+ K KVQELQ+ + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1068 FQAVPGCGISCKVGGVEAILGTAEEAPNKLDANRTGDSSAPLGDNGKYSVLIGNREWMRRNGLNIANDVNDAMTNHEMKGQTAILAAIDGALCGMIAIADTVKQEAALAVHTLQSMGIDVVLITGDNRKTAKAIATQVGIK--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALAKADVGIAIGTGTDVAIEAADVVLIRN 1273 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5252.12555.1 >prot_H-elongata_contig5252.12555.1 ID=prot_H-elongata_contig5252.12555.1|Name=mRNA_H-elongata_contig5252.12555.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp EPTVDGFQATPGMGVSCTVVHPGAGTKIDASSRGDSRPSRGDLVLVGTRSback to top mRNA from alignment at H-elongata_contig5252:181..2735+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5252.12555.1 ID=mRNA_H-elongata_contig5252.12555.1|Name=mRNA_H-elongata_contig5252.12555.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2555bp|location=Sequence derived from alignment at H-elongata_contig5252:181..2735+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5252:181..2735+ >mRNA_H-elongata_contig5252.12555.1 ID=mRNA_H-elongata_contig5252.12555.1|Name=mRNA_H-elongata_contig5252.12555.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig5252:181..2735+ (Himanthalia elongata Himel1 dioecious)back to top |