mRNA_H-elongata_contig5252.12556.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5252.12556.1
Unique NamemRNA_H-elongata_contig5252.12556.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5252.12556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5252contigH-elongata_contig5252:2179..2714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size536
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5252.12556.1prot_H-elongata_contig5252.12556.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5252 2310..2618 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.6878583-UTR-H-elongata_contig5252:2178..23091622930857.6878583-UTR-H-elongata_contig5252:2178..2309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5252 2179..2309 +
1691679600.0896716-UTR-H-elongata_contig5252:2178..23091691679600.0896716-UTR-H-elongata_contig5252:2178..2309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5252 2179..2309 +
1622930857.7220209-UTR-H-elongata_contig5252:2618..27141622930857.7220209-UTR-H-elongata_contig5252:2618..2714Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5252 2619..2714 +
1691679600.1045952-UTR-H-elongata_contig5252:2618..27141691679600.1045952-UTR-H-elongata_contig5252:2618..2714Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5252 2619..2714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.7055964-CDS-H-elongata_contig5252:2309..26181622930857.7055964-CDS-H-elongata_contig5252:2309..2618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 2310..2618 +
1691679600.0970545-CDS-H-elongata_contig5252:2309..26181691679600.0970545-CDS-H-elongata_contig5252:2309..2618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 2310..2618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5252.12556.1

>prot_H-elongata_contig5252.12556.1 ID=prot_H-elongata_contig5252.12556.1|Name=mRNA_H-elongata_contig5252.12556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MLCPSVGRGCNLATRSAFRVTRGLSREKTLSTRDVAMSPCLDILVCFDWI
LGRFCMYVSINFHTLWCTLMSPPSTNAACETRLGVLRCDVMASTYLFCSP
LV*
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mRNA from alignment at H-elongata_contig5252:2179..2714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5252.12556.1 ID=mRNA_H-elongata_contig5252.12556.1|Name=mRNA_H-elongata_contig5252.12556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=536bp|location=Sequence derived from alignment at H-elongata_contig5252:2179..2714+ (Himanthalia elongata Himel1 dioecious)
TGGTGGGGGATGGGGTGAACGACTCCCCGGCCTTGGCGACTGCAGACGTC
GGGATCGCCGTGGGCGCCGGTACTCAGGTGTGTTGTGCCTTTACAAATCT
ACCATCATGATATCCATACATTCTAAAAAAAATGCTGTGTCCGTCGGTAG
GCCGTGGCTGTAATTTAGCCACACGATCAGCTTTTCGGGTAACGAGAGGC
CTATCGCGAGAGAAGACACTGTCCACGCGTGATGTCGCCATGTCGCCATG
TCTGGATATCCTGGTGTGTTTTGATTGGATCCTTGGGCGTTTCTGTATGT
ATGTGTCTATCAACTTCCACACCCTCTGGTGTACTCTGATGTCCCCCCCC
TCTACCAACGCTGCCTGCGAGACACGCCTCGGGGTTTTGCGATGTGATGT
GATGGCATCGACATATTTGTTCTGTTCGCCCTTGGTTTGATGCCGCGTCT
GTGCGAGGGCGATGAATGATGGATGACAACCGTTGTGTTCGCGGCAGGTG
GCGGTGGAGGCGGCAGATATGGTCCTGGTGCGGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig5252:2179..2714+

>mRNA_H-elongata_contig5252.12556.1 ID=mRNA_H-elongata_contig5252.12556.1|Name=mRNA_H-elongata_contig5252.12556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig5252:2179..2714+ (Himanthalia elongata Himel1 dioecious)
ATGCTGTGTCCGTCGGTAGGCCGTGGCTGTAATTTAGCCACACGATCAGC
TTTTCGGGTAACGAGAGGCCTATCGCGAGAGAAGACACTGTCCACGCGTG
ATGTCGCCATGTCGCCATGTCTGGATATCCTGGTGTGTTTTGATTGGATC
CTTGGGCGTTTCTGTATGTATGTGTCTATCAACTTCCACACCCTCTGGTG
TACTCTGATGTCCCCCCCCTCTACCAACGCTGCCTGCGAGACACGCCTCG
GGGTTTTGCGATGTGATGTGATGGCATCGACATATTTGTTCTGTTCGCCC
TTGGTTTGAATGCTGTGTCCGTCGGTAGGCCGTGGCTGTAATTTAGCCAC
ACGATCAGCTTTTCGGGTAACGAGAGGCCTATCGCGAGAGAAGACACTGT
CCACGCGTGATGTCGCCATGTCGCCATGTCTGGATATCCTGGTGTGTTTT
GATTGGATCCTTGGGCGTTTCTGTATGTATGTGTCTATCAACTTCCACAC
CCTCTGGTGTACTCTGATGTCCCCCCCCTCTACCAACGCTGCCTGCGAGA
CACGCCTCGGGGTTTTGCGATGTGATGTGATGGCATCGACATATTTGTTC
TGTTCGCCCTTGGTTTGA
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