mRNA_H-elongata_contig11593.1255.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11593.1255.1
Unique NamemRNA_H-elongata_contig11593.1255.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Match: D7FQF2_ECTSI (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF2_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 5.110e-116
Identity = 172/243 (70.78%), Postives = 207/243 (85.19%), Query Frame = 1 
Query:   13 VSNRPPHPLFHFGMTGSFSIKGQARHKYVKFKVEGEWPPKFTKLELEMANGTCLALTDPRRLARVRLRDDPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQERLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACEKRADYTIFSPHWLFHHRWGKGKSSGGAPFTASGHCIQFDVIGGRTTAIVPAVQRMGLLNA-----GSSTGKKNSAAKGKE 726
            V ++PPHPLFHFGMTG+F++KG+ RHK+VKFKV  EWPP+F KLE++M+NG CLALTDPRRL+RV+LR +PEASPPI+ LGPDP+T+PL LE FAA +AKP+APIKAVLL Q+R+VSGVGNWVADEVC+QACVHPGA CNTL PEQ+AALH++LLSVCREACE RADYT F   WLFHHRWGKGK+S GAP  +SGH I FDV+GGRTTAIVPAVQ+ GLL +     G   G+++ +A GK+
Sbjct:   76 VLDKPPHPLFHFGMTGAFTVKGEKRHKFVKFKVSEEWPPRFAKLEIQMSNGACLALTDPRRLSRVKLRAEPEASPPISLLGPDPLTHPLSLETFAAALAKPTAPIKAVLLAQDRVVSGVGNWVADEVCFQACVHPGAACNTLDPEQIAALHSRLLSVCREACEARADYTSFPKEWLFHHRWGKGKNSEGAPRVSSGHPIVFDVVGGRTTAIVPAVQKKGLLRSPTAASGGVDGRRSGSASGKK 318
[Close]
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Match: A0A6H5JAV5_9PHAE (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV5_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 1.050e-109
Identity = 169/237 (71.31%), Postives = 198/237 (83.54%), Query Frame = 1 
Query:   13 VSNRPPHPLFHFGMTGSFSIKGQARHKYVKFKVEGEWPPKFTKLELEMANGTCLALTDPRRLARVRLRDDPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQERLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACEKRADYTIFSPHWLFHHR--------------WGKGKSSGGAPFTASGHCIQFDVIGGRTTAIVPAVQRMGLLNA 681
            +++RPPHPLFHFGMTG+F++KG+ RHK+VKFKV  EWPP+F KLEL+M+NG CLALTDPRRL+RV+LR +PEASPPI+ LGPDP+T+PL LE FAA +AKP+APIKAVLL Q+R+VSGVGNWVADEVC+QACVHPGA CNTL PEQVAALH++LLSVCREACE RADYT F   WLFHHR              WGKGK+S GAP  +SGH I FDV+GGRTTAIVPAVQ+ GLL +
Sbjct:  308 IASRPPHPLFHFGMTGAFTVKGEKRHKFVKFKVSEEWPPRFAKLELQMSNGACLALTDPRRLSRVKLRAEPEASPPISLLGPDPLTHPLSLETFAAALAKPTAPIKAVLLAQDRVVSGVGNWVADEVCFQACVHPGAACNTLDPEQVAALHSRLLSVCREACEARADYTSFPKEWLFHHRQGMHHPRSPTRTLLWGKGKNSEGAPRVSSGHPIVFDVVGGRTTAIVPAVQKKGLLRS 544
[Close]
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Match: A0A7S1N840_9EUGL (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N840_9EUGL)

HSP 1 Score: 222 bits (565), Expect = 1.030e-63
Identity = 122/243 (50.21%), Postives = 148/243 (60.91%), Query Frame = 1 
Query:   34 PLFHFGMTGSFSIKGQARHKYVKFKVEGE-WPPKFTKLELEMANGTCLALTDPRRLARVRLRDDPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQERLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACEKRADYTIFSPHWLFHHRWGKGKSSGGAPFTASGHCIQFDVIGGRTTAIVPAVQRMGLLNAGSST---------GKKNSAAKGKEVK 732
            PLFHFGMTGSF++KG    KY +F V  E WPP+FTKLEL    G  LA TDPRRL RV+LR  P   PPI+ L PDP+T P   E F+ I+ K   PIKAVLLDQER V GVGNWVADEV +Q+ ++PG     L   QV  LHA ++ VC+EAC+ +AD   F   WLFH+RWG GKS+   P    G  I F+   GRTTA VP  Q+      G +          GKK +A +G+  K
Sbjct:   98 PLFHFGMTGSFTVKGVKALKYKEFLVRDEVWPPRFTKLELVFTGGVRLAFTDPRRLGRVKLRAAPVTEPPISLLAPDPVTGPFHCEAFSQILRKAQTPIKAVLLDQERAVCGVGNWVADEVLFQSGIYPGTTAAQLTDAQVETLHATIIRVCKEACQAQADSDRFPLDWLFHYRWGHGKSADRLP---DGRRIAFETCAGRTTAWVPEAQKASSAKGGRAPSAPRTDGRLGKKEAAPRGRGQK 337
[Close]
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Match: A0A7S2W0X7_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0X7_9STRA)

HSP 1 Score: 219 bits (559), Expect = 3.010e-63
Identity = 116/211 (54.98%), Postives = 138/211 (65.40%), Query Frame = 1 
Query:   37 LFHFGMTGSFSIKGQARHKYVKFKVEGEWPPKFTKLELEMANGTCLALTDPRRLARVRLRDDPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQERLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACEKRADYTIFSPHWLFHHRWGKGKSSGGAPFTASGHCIQFDVIGGRTTAIVPAVQRMG 669
            LFH GMTGSF++KG  R  YV+FKV+  WPPKFTKL L+   G  +A  DPRRL R+ LR  PE  PPI+ L PDPI  PL   +F + +   S P+K+VLLDQE++V GVGNWVADEV YQA VHP AK N+L+  Q  A+H  L  VCR A    A    F   WLFH RWGKGK   G    A G  + F+ IGGRT+AIVPA Q+MG
Sbjct:   67 LFHCGMTGSFAVKGVDRVSYVRFKVDEAWPPKFTKLLLKFEGGVEVAFCDPRRLGRILLRRCPEEEPPISKLAPDPIEQPLQSAEFCSRLQSFSGPVKSVLLDQEKVVCGVGNWVADEVLYQARVHPNAKANSLSDSQALAVHESLDVVCRTAVSVNARSAAFPEDWLFHVRWGKGK---GPVKDAQGQRVVFETIGGRTSAIVPARQKMG 274
[Close]
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Match: A0A7S2UZQ4_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZQ4_9STRA)

HSP 1 Score: 221 bits (564), Expect = 3.420e-62
Identity = 119/232 (51.29%), Postives = 151/232 (65.09%), Query Frame = 1 
Query:   31 HPLFHFGMTGSFSIKGQARHKYVKFKVEGE--WPPKFTKLELEMANGTCLALTDPRRLARVRLRDDPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQERLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACEKRADYTIFSPHWLFHHRWGKG-KSSGGAPFTASGHCIQFDVIGGRTTAIVPAVQRMGLLNAGSSTGKKNSAAK 717
            H LFH GMTGSF I+G+    YV+ K E +  WPP+F KLEL   NG  +A  DPRRL R++LR +P  SPPI+ L  DP+ +P  L  F   + + SAP+KA LLDQ ++VSGVGNW+ADEVC+QA VHP  +CN L  E  A LH+ LL +C+ A +  ADY  F   WLFH+RWGKG K++   P   +G  I+F  +GGRTTA+VPAVQ   L   GS+   K  AAK
Sbjct:   99 HVLFHLGMTGSFRIQGKDGVCYVRLKPEDKTVWPPRFCKLELVFENGVRVAFCDPRRLGRIKLRSNPLESPPISLLARDPVEDPPTLAQFQDRLKELSAPVKAALLDQSKIVSGVGNWIADEVCFQARVHPATRCNDLTEEMSARLHSSLLDICKFAVDVEADYHQFPDSWLFHYRWGKGNKTNSKMP---NGDKIEFSEVGGRTTAVVPAVQGKPLKAVGSTKSTKAKAAK 327
[Close]
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Match: A0A835YY62_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY62_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.660e-58
Identity = 104/188 (55.32%), Postives = 135/188 (71.81%), Query Frame = 1 
Query:  106 KVEGEWPPKFTKLELEMANGTCLALTDPRRLARVRLRDDPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQERLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACEKRADYTIFSPHWLFHHRWGKGKSSGGAPFTASGHCIQFDVIGGRTTAIVPAVQRMG 669
            +V  EWP +FTKLE++ +NG  LA TDPRRL R+ LR DP++ PPI++L PDP+  P  +ED  A  AK SAP+KAVLLDQ R+V GVGNWVADEVCYQA +HPG+ CNTL+ EQ++ LH  L+ V   ACE  AD   +   WLFH+RW K +++GG    A G+ I+F+ +GGRTTA+VP V + G
Sbjct:  129 QVGDEWPLRFTKLEIDFSNGVKLAFTDPRRLGRICLRADPKSEPPISTLAPDPLYEPPTVEDLVARFAKISAPLKAVLLDQNRIVCGVGNWVADEVCYQAGIHPGSPCNTLSAEQISQLHEALIQVVTVACEANADSDKYPKSWLFHYRWSK-RNNGGKVTDAHGNPIEFETVGGRTTALVPKVMKKG 315
[Close]
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Match: A0A516AG26_LINPO (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG26_LINPO)

HSP 1 Score: 204 bits (519), Expect = 2.060e-57
Identity = 110/223 (49.33%), Postives = 141/223 (63.23%), Query Frame = 1 
Query:   28 PHPLFHFGMTGSFSIKGQARHKYVKFKVEGEWPPKFTKLELEMANG----TCLALTDPRRLARVRLRDDPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQERLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACEKRADYTIFSPHWLFHHRWGKGKSSGGAPFTASGHCIQFDVIGGRTTAIVPAVQRMGLLNAG 684
            P  LFH GMTG+ +I G  R  +  F+V+  WPP+FTKL+LE+       T LA  DPRR  +V LR +    PP++ LGPDP+ +P PLE FA  + + +AP+KA+LLDQE+ V GVGNWVADEV  +A VHP A   TL+  Q+AALH  +LSV + A    AD   F  +WLFH RWG+G S  G      G  + F+ +GGRTTA VPA+QR G   AG
Sbjct:   82 PQLLFHCGMTGALAIDGVERFSFQSFRVDEAWPPRFTKLQLELGGRGQEPTRLAFADPRRFGKVLLRQNAAEEPPVSLLGPDPLASPFPLEAFAEQLRRSAAPVKALLLDQEKAVCGVGNWVADEVLREARVHPAAPARTLSDGQLAALHRGVLSVLKRAVAVDADAARFPKNWLFHCRWGQGPSGAGVCLP-DGSEVAFEDVGGRTTAYVPALQRPGERPAG 303
[Close]
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Match: A0A7S0N020_9CHLO (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N020_9CHLO)

HSP 1 Score: 200 bits (508), Expect = 5.400e-57
Identity = 105/189 (55.56%), Postives = 131/189 (69.31%), Query Frame = 1 
Query:   19 NRPPHPLFHFGMTGSFSIKGQARHKYVKFKVEGE-WPPKFTKLELEMANGTCLALTDPRRLARVRLRDDPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQERLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACEKRADYTIFSPHWLFHHRWGK--GKSSG 576
            ++ P PLFHFGMTGSF ++ +A  +Y  FKV+ E WPP+F K+ LE+ NG  +A TD RR AR+RLR+DP ASPPI+ LG DP+ + LPLE+FA  +    AP+KAVLLDQ   V+GVGNW+ADEV YQA VHP A    + PEQVAA+H KL  V R A    A+   F   WLFH+RWGK  GK +G
Sbjct:   67 DKRPQPLFHFGMTGSFVVENEAGVEYKSFKVDHETWPPRFHKVCLELDNGKRVAFTDARRFARIRLREDPAASPPISDLGFDPVHDDLPLEEFAKRLGARKAPVKAVLLDQA-FVAGVGNWIADEVLYQAAVHPRAPAADMLPEQVAAVHQKLYEVIRLAVAVNAEKDSFPDSWLFHYRWGKVAGKMNG 254
[Close]
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Match: A0A0G4GD98_VITBC (DNA-(apurinic or apyrimidinic site) lyase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GD98_VITBC)

HSP 1 Score: 202 bits (515), Expect = 4.030e-56
Identity = 109/215 (50.70%), Postives = 141/215 (65.58%), Query Frame = 1 
Query:   19 NRPPHPLFHFGMTGSFSIKGQARHKYVKFKVEGE-WPPKFTKLELEMANGTCLALTDPRRLARVRLRDDPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQERLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACEKRADYTIFSPHWLFHHRWGKGKSSGGAPFTASGHCIQFDVIGGRTTAIVPAVQ 660
            ++ PHP FHFGMTGSF++KG     Y  F V+ E WPPKF K+ELEM +GT  A  + RRL R+RL DDP +   I+ LG DP+T  +P+ DF + I +  APIKAVLLDQ  L +GVGNW+ADEV YQA VHPG   + +  E++  +H  L +V R AC+  AD   F   WLFH+RW   K +G A   A+   I+F+ +GGRT+A VPAVQ
Sbjct:   67 DKAPHPTFHFGMTGSFAVKGGEVAYYKSFSVDTENWPPKFWKVELEMDDGTLFAFMNIRRLGRIRLLDDPLSHKSISELGFDPLTEMMPVSDFVSAIRRRHAPIKAVLLDQS-LAAGVGNWIADEVLYQARVHPGTVGSVMTDEEITRVHDSLDNVIRTACDANADSDKFPQSWLFHYRWSV-KDAGNAK-DANNQTIKFEKVGGRTSAYVPAVQ 278
[Close]
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Match: A0A8J5XVG9_DIALT (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XVG9_DIALT)

HSP 1 Score: 202 bits (513), Expect = 1.900e-55
Identity = 111/217 (51.15%), Postives = 138/217 (63.59%), Query Frame = 1 
Query:   37 LFHFGMTGSFSIKGQARHKYVKFKVEGE-WPPKFTKLELEMANGT----CLALTDPRRLARVRLRD-DPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQERLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACEKRADYTIFSPHWLFHHRWGKGKSSGGAPFTASGHCIQFDVIGGRTTAIVPAVQRMG 669
            L H GMTG+   +G    KY +  ++   WPPKFTKLEL +A+ T     LA TD RR  R+ LR+ D   SPPI +L  DPI NP   E+FA ++A+P+  IKA LLDQ RLV GVGNWVADEV YQA + P A CN L+ EQ AALHA L+ VC  AC+  AD ++F P WLFHHRW   +++G         C  FD +GGRTTA +P VQ+ G
Sbjct:   91 LIHLGMTGAVLARGGEGPKYKRLTIDATVWPPKFTKLELSLADETGCTCSLAYTDSRRFGRILLREGDATLSPPILALAADPILNPPSAEEFARMLARPTTSIKAALLDQSRLVCGVGNWVADEVLYQARILPSAPCNALSAEQCAALHATLIDVCTTACKANADSSLFPPAWLFHHRWAN-QTTGSISSPLGRIC--FDTVGGRTTAFLPHVQKPG 304
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11593.1255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQF2_ECTSI5.110e-11670.78DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A6H5JAV5_9PHAE1.050e-10971.31DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A7S1N840_9EUGL1.030e-6350.21DNA-(apurinic or apyrimidinic site) lyase (Fragmen... [more]
A0A7S2W0X7_9STRA3.010e-6354.98DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A7S2UZQ4_9STRA3.420e-6251.29DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A835YY62_9STRA1.660e-5855.32DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A516AG26_LINPO2.060e-5749.33DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A7S0N020_9CHLO5.400e-5755.56DNA-(apurinic or apyrimidinic site) lyase (Fragmen... [more]
A0A0G4GD98_VITBC4.030e-5650.70DNA-(apurinic or apyrimidinic site) lyase n=2 Tax=... [more]
A0A8J5XVG9_DIALT1.900e-5551.15DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11593contigH-elongata_contig11593:4681..8593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.8
Seed ortholog evalue2.1e-91
Seed eggNOG ortholog2880.D7FQF2
KEGG koko:K10563
KEGG Pathwayko03410,map03410
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360
EggNOG free text desc.oxidized purine nucleobase lesion DNA N-glycosylase activity
EggNOG OGs2QVDB@2759,COG0266@1
EC3.2.2.23,4.2.99.18
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size1558
Cds size1200
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.142936-UTR-H-elongata_contig11593:4680..47311622929672.142936-UTR-H-elongata_contig11593:4680..4731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11593 4681..4731 +
1691679114.016252-UTR-H-elongata_contig11593:4680..47311691679114.016252-UTR-H-elongata_contig11593:4680..4731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11593 4681..4731 +
1622929672.228683-UTR-H-elongata_contig11593:8286..85931622929672.228683-UTR-H-elongata_contig11593:8286..8593Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11593 8287..8593 +
1691679114.0907536-UTR-H-elongata_contig11593:8286..85931691679114.0907536-UTR-H-elongata_contig11593:8286..8593Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11593 8287..8593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.158746-CDS-H-elongata_contig11593:4731..48331622929672.158746-CDS-H-elongata_contig11593:4731..4833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11593 4732..4833 +
1691679114.029895-CDS-H-elongata_contig11593:4731..48331691679114.029895-CDS-H-elongata_contig11593:4731..4833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11593 4732..4833 +
1622929672.172365-CDS-H-elongata_contig11593:5113..53081622929672.172365-CDS-H-elongata_contig11593:5113..5308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11593 5114..5308 +
1691679114.0399885-CDS-H-elongata_contig11593:5113..53081691679114.0399885-CDS-H-elongata_contig11593:5113..5308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11593 5114..5308 +
1622929672.185568-CDS-H-elongata_contig11593:5605..57071622929672.185568-CDS-H-elongata_contig11593:5605..5707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11593 5606..5707 +
1691679114.0496206-CDS-H-elongata_contig11593:5605..57071691679114.0496206-CDS-H-elongata_contig11593:5605..5707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11593 5606..5707 +
1622929672.1991417-CDS-H-elongata_contig11593:6115..62161622929672.1991417-CDS-H-elongata_contig11593:6115..6216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11593 6116..6216 +
1691679114.0627596-CDS-H-elongata_contig11593:6115..62161691679114.0627596-CDS-H-elongata_contig11593:6115..6216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11593 6116..6216 +
1622929672.2148166-CDS-H-elongata_contig11593:7586..82861622929672.2148166-CDS-H-elongata_contig11593:7586..8286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11593 7587..8286 +
1691679114.0800164-CDS-H-elongata_contig11593:7586..82861691679114.0800164-CDS-H-elongata_contig11593:7586..8286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11593 7587..8286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11593.1255.1prot_H-elongata_contig11593.1255.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11593 4732..8286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11593.1255.1

>prot_H-elongata_contig11593.1255.1 ID=prot_H-elongata_contig11593.1255.1|Name=mRNA_H-elongata_contig11593.1255.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=400bp
MTGSFSIKGQARHKYVKFKVEGEWPPKFTKLELEMANGTCLALTDPRRLA
RVRLRDDPEASPPITSLGPDPITNPLPLEDFAAIIAKPSAPIKAVLLDQE
RLVSGVGNWVADEVCYQACVHPGAKCNTLAPEQVAALHAKLLSVCREACE
KRADYTIFSPHWLFHHRWGKGKSSGGAPFTASGHCIQFDVIGGRTTAIVP
AVQRMGLLNAGSSTGKKNSAAKGKEVKTKGRTRVTKSRKHEGVGEKGSGG
DGRGGENVLSKKEVRVVTTSSVDGPNNARGGRRKKTPVSGKKSVNSIRKP
NTEDPEEAKRSRGSKRSTSKKVASAAVNSRAVTVSIADRGKAKPETAKPR
PKTATRARKMEAKPAAQNRRSKRSMGKEEKGSTGSKQKIAKRLRTSTMI*
back to top

mRNA from alignment at H-elongata_contig11593:4681..8593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11593.1255.1 ID=mRNA_H-elongata_contig11593.1255.1|Name=mRNA_H-elongata_contig11593.1255.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3913bp|location=Sequence derived from alignment at H-elongata_contig11593:4681..8593+ (Himanthalia elongata Himel1 dioecious)
ATTGTAAAATTGGTATCAAACAGGCCTCCCCACCCGCTCTTTCACTTCGG
GATGACGGGCTCTTTCTCCATCAAGGGCCAGGCGAGGCATAAGTACGTCA
AGTTTAAAGTTGAAGGGGAATGGCCGCCAAAGTTCACCAAGCTTGAGCTC
GAGGTGAGAAACGAAAAACGGATTACAGTACTACTGGTAAGAGTGCAGGA
TTCATCCTCCATTGCGGTTTTCGCCGCATTTGTGTGTCGCAAGAAGTTAT
ATCGGCCACAAGACCTACAACACCCACAACACGCTGTGGTGCCATGAGGG
CCAGGGTCCTGCAACAACTCGTGTGGAAGAAAACGGCCTCACTTTCATAT
TCATTTCCGAGGTATCCCCATTCTTAAGTAGTTTATTCTCACTTGATTGC
GTCCCGTGTTCATTATCCTGATTCTTCCCCAAGATGGCAAACGGAACGTG
TCTGGCGTTGACCGACCCAAGGCGCCTAGCGAGGGTTCGGCTTCGCGATG
ACCCCGAGGCCTCGCCGCCCATTACTTCACTTGGCCCCGATCCCATCACA
AATCCTCTGCCCTTGGAAGATTTTGCTGCTATTATTGCGAAACCCTCAGC
ACCTATCAAGGCAGTGCTCCTGGATCAGGTAATAATGTAGTTTTATCCTT
AGACTTAAGCTTGTTTATCTAGCACGACCCCTTTGGGGTTTGTTGATGGG
TTGGTTCACTGATATCGGAGTGAGCTTCCACCTCTTATGTATGTTCCACA
TGTCATTATTTCGATGTCTAGTCCGCAGCGGTCCGAGGTAATGAAACAAA
ACTTTTTTCTCGGGGGAGATCATTTTACCCCTGCTCACTGGTCAAAGCGC
GAATTCTTCTCTAGCGATGATCTGAAGGTAGTTTTTTATTTTATGAAAGC
GAAAGACCGTGCTGATGCCCTGCAGGAACGACTTGTCTCGGGTGTGGGGA
ACTGGGTGGCGGATGAGGTATGTTACCAAGCTTGCGTCCACCCTGGAGCT
AAGTGCAATACCCTGGCGCCAGAACAGGTGAAATTGACGACGATCACGAT
CGGCTTGGGAAATTGGGGCGAATTGACGAGAATCGACATGATCCCATGTC
CAAGCATCGTGTTAGGTATGTGGTCGTGTCGGCAACCTTTTAGAGACATA
CCTCGTTGTGGGTAGAGCCTCGATTCAGCGAGGTCCATTCTACCGCCAAC
CAAACCCCGGCGGCAACGATACGTGATATGGCCGTGCGAAGATGCGAATC
CACGCGACGCCGGACGGTGACTATTTATTCCGTATATGTAGACGATAATG
CCGTCAGAAATATCGCCTTTTCTTTGGCGTGCGCTCGCCGTAGTTGAGGG
CGACACGAGCGCCTCAGCTATGGCGCGCATCGTCCATGCCTAATGCACCG
TCGTGGTACCCTCTGTGCACCCTCCCTCCTCAAAGGTGGCTGCTCTGCAC
GCTAAGCTCTTGTCTGTGTGCCGCGAAGCTTGTGAGAAACGAGCGGATTA
CACGATTTTTTCGCCACACTGGCTATTCCACCACAGGTCTGTACGGATCA
CGAATTATGTGCCCCAACCCCTCTCTCAGCTGGTTGCCTTACGCATACCA
GGTGGGCGAAACAAACTCAAGAGTATCGGACAACTTTAATTTATCAACCG
AGTAGTCTAACTAGTATCCACGAAAAACTAGCAGTACTTTTGTGGGAAGT
AGGGAGTTCAATCCCAGTTGGGATGTATTTTTATGGTTTCTGTAGCGGAA
AACGTGAAAACGAGAGTGAGCAACGTTGAACAATTACTAGCTGACGAGTT
GCAAGAGGACTGTGCTTGCATCACAAAAAAATCAAAGTCGAAGGCGTGAG
ACAACCATTGAAAGATGGGTAGATGCACCCCTTAGGACAAAAGGGGGGAA
TTGTAACCTACGTTGAAAGGGGTCGCTGCCGGAAGAAATTGTTAATAATA
ATAATAATAATAATATGTATAGATAGCAGTTATCCGCGTGACTAGATTGG
ATGATCTGTACACGATATTTAGTTGTTGTAAGTAATTTAGTCCTAAAACC
GTGGCGAAATGCCGTCGTAAATTCTTTGTACGAGGTTAGTTGCCCATGAT
TTATTTTTGTCGCAATTATCGTCCTATTAATTTTCTGCTGTTCGCTCCCT
CTTAATAATTATATTTTATCCATTGACTGTCATCTGATCCACCTCTAAAT
TCGTGAGTGCGTACACCGATGTGTTGGCCAGAGAAATATATCGATGGCCC
CTTATATCGGAAGTCGTTGGCGTTCGGAAGTTACTTGTTCCCTGTTTAAT
TTGAAATTCTATATTTTGGGGCTGCGGAGTGAATATGCGATTCCTCGATT
AAATCTTTGAGTTTCTCCGTAAAAGTTCACACACATGATTGCGATCTATA
TTTAATTGTTTGATTGATTGAGTGTGTTCAATTATTCGTAGATATTTTGT
GTTTTGATTCAATTTTTGGAATATATCTCCGGCGTAAAAAGCCATACTGG
TGCCAAACACAAAACGATGTCAAGGAAAGTGTCAGGAACATTATTTCAAA
CGTTCAATGCAAAATTCGAAAAATTGAACAGGGGATAACCGAAAAAAGTG
TAATGCCTAGAGCTACCCTTTTGGTTGACTTACCTGGGATTATCATGGGT
TGCGCCTGAGCTTTAGAGAGAACTTGTGATACTTGAATTAAACGAAACTA
GCATTCCTCTAAAACAAGCAAATGCCACAAGCTAGTTGGCGTTAAAAAAC
AACTCCTGATTATTTCATGACCAAACGGTGTTGTTTCGGAACGTGATGCT
GACAGCCACGGCTCGTAAGCTGACAACGATGTTCAAGTAGTGCGCTCTTC
CCTCATACTTACCGTGCAACGCGGGCGGAATCGAATCAACGAATGAACGC
GGATAGGTGGGGCAAAGGAAAAAGCTCAGGAGGAGCCCCTTTCACCGCCT
CCGGTCATTGTATACAGTTCGACGTAATTGGCGGACGCACCACAGCCATC
GTGCCCGCCGTGCAGCGGATGGGCCTCCTGAATGCCGGATCAAGCACAGG
AAAAAAAAATTCCGCCGCCAAGGGCAAAGAAGTGAAAACGAAGGGCAGAA
CTCGAGTGACAAAATCCCGAAAACACGAGGGGGTTGGGGAAAAAGGTAGC
GGAGGTGACGGTCGTGGTGGTGAAAACGTTTTGTCCAAAAAAGAGGTGCG
GGTAGTCACGACGTCGAGCGTTGACGGCCCTAACAATGCCCGAGGTGGGC
GCAGGAAAAAGACGCCAGTGAGTGGCAAGAAGAGCGTGAACTCGATAAGG
AAGCCCAACACCGAAGACCCCGAGGAGGCCAAGAGGTCAAGAGGTAGCAA
GAGGTCGACCTCGAAGAAGGTAGCTTCAGCCGCCGTAAACTCTCGAGCTG
TTACGGTGAGTATCGCGGACCGAGGGAAAGCGAAGCCCGAAACGGCGAAA
CCAAGACCGAAGACCGCTACCCGTGCAAGGAAGATGGAGGCGAAGCCCGC
CGCACAGAACAGGCGTTCGAAGAGAAGTATGGGAAAGGAGGAGAAAGGGT
CGACTGGGTCTAAACAAAAGATAGCCAAGCGCCTGAGGACCTCTACCATG
ATTTAAAGGTGGCGCGATCATCGAAACGGAACGGCCTTCGAGCAGTGCTG
CCGGGCAGGTTACCACCAAAACAAAGCGACAAAGCGTGGCGACAAGGGTA
GGAAGAGAGCAGCGTCTACTTGCTAGTTTGTTCTCTGTGAGATGCTGGGC
GAGCTTTCCTTCACTGGTCCGGAGCTCGGTTGAGCTACGGTTCTCGGGCT
AGAAATTGGTGCTTAATAATGATGACTGAAGGAATGGTTCTACTCACGGT
AGGATTGGCAGGTCTTACGAAAGGGAGTGTGCGGTTGGTGAAATGGCTTC
AGAAGAAATAGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11593:4681..8593+

>mRNA_H-elongata_contig11593.1255.1 ID=mRNA_H-elongata_contig11593.1255.1|Name=mRNA_H-elongata_contig11593.1255.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2400bp|location=Sequence derived from alignment at H-elongata_contig11593:4681..8593+ (Himanthalia elongata Himel1 dioecious)
ATGACGGGCTCTTTCTCCATCAAGGGCCAGGCGAGGCATAAGTACGTCAA
GTTTAAAGTTGAAGGGGAATGGCCGCCAAAGTTCACCAAGCTTGAGCTCG
AGATGACGGGCTCTTTCTCCATCAAGGGCCAGGCGAGGCATAAGTACGTC
AAGTTTAAAGTTGAAGGGGAATGGCCGCCAAAGTTCACCAAGCTTGAGCT
CGAGATGGCAAACGGAACGTGTCTGGCGTTGACCGACCCAAGGCGCCTAG
CGAGGGTTCGGCTTCGCGATGACCCCGAGGCCTCGCCGCCCATTACTTCA
CTTGGCCCCGATCCCATCACAAATCCTCTGCCCTTGGAAGATTTTGCTGC
TATTATTGCGAAACCCTCAGCACCTATCAAGGCAGTGCTCCTGGATCAGA
TGGCAAACGGAACGTGTCTGGCGTTGACCGACCCAAGGCGCCTAGCGAGG
GTTCGGCTTCGCGATGACCCCGAGGCCTCGCCGCCCATTACTTCACTTGG
CCCCGATCCCATCACAAATCCTCTGCCCTTGGAAGATTTTGCTGCTATTA
TTGCGAAACCCTCAGCACCTATCAAGGCAGTGCTCCTGGATCAGGAACGA
CTTGTCTCGGGTGTGGGGAACTGGGTGGCGGATGAGGTATGTTACCAAGC
TTGCGTCCACCCTGGAGCTAAGTGCAATACCCTGGCGCCAGAACAGGAAC
GACTTGTCTCGGGTGTGGGGAACTGGGTGGCGGATGAGGTATGTTACCAA
GCTTGCGTCCACCCTGGAGCTAAGTGCAATACCCTGGCGCCAGAACAGGT
GGCTGCTCTGCACGCTAAGCTCTTGTCTGTGTGCCGCGAAGCTTGTGAGA
AACGAGCGGATTACACGATTTTTTCGCCACACTGGCTATTCCACCACAGG
TGGCTGCTCTGCACGCTAAGCTCTTGTCTGTGTGCCGCGAAGCTTGTGAG
AAACGAGCGGATTACACGATTTTTTCGCCACACTGGCTATTCCACCACAG
GTGGGGCAAAGGAAAAAGCTCAGGAGGAGCCCCTTTCACCGCCTCCGGTC
ATTGTATACAGTTCGACGTAATTGGCGGACGCACCACAGCCATCGTGCCC
GCCGTGCAGCGGATGGGCCTCCTGAATGCCGGATCAAGCACAGGAAAAAA
AAATTCCGCCGCCAAGGGCAAAGAAGTGAAAACGAAGGGCAGAACTCGAG
TGACAAAATCCCGAAAACACGAGGGGGTTGGGGAAAAAGGTAGCGGAGGT
GACGGTCGTGGTGGTGAAAACGTTTTGTCCAAAAAAGAGGTGCGGGTAGT
CACGACGTCGAGCGTTGACGGCCCTAACAATGCCCGAGGTGGGCGCAGGA
AAAAGACGCCAGTGAGTGGCAAGAAGAGCGTGAACTCGATAAGGAAGCCC
AACACCGAAGACCCCGAGGAGGCCAAGAGGTCAAGAGGTAGCAAGAGGTC
GACCTCGAAGAAGGTAGCTTCAGCCGCCGTAAACTCTCGAGCTGTTACGG
TGAGTATCGCGGACCGAGGGAAAGCGAAGCCCGAAACGGCGAAACCAAGA
CCGAAGACCGCTACCCGTGCAAGGAAGATGGAGGCGAAGCCCGCCGCACA
GAACAGGCGTTCGAAGAGAAGTATGGGAAAGGAGGAGAAAGGGTCGACTG
GGTCTAAACAAAAGATAGCCAAGCGCCTGAGGACCTCTACCATGATTTAA
GTGGGGCAAAGGAAAAAGCTCAGGAGGAGCCCCTTTCACCGCCTCCGGTC
ATTGTATACAGTTCGACGTAATTGGCGGACGCACCACAGCCATCGTGCCC
GCCGTGCAGCGGATGGGCCTCCTGAATGCCGGATCAAGCACAGGAAAAAA
AAATTCCGCCGCCAAGGGCAAAGAAGTGAAAACGAAGGGCAGAACTCGAG
TGACAAAATCCCGAAAACACGAGGGGGTTGGGGAAAAAGGTAGCGGAGGT
GACGGTCGTGGTGGTGAAAACGTTTTGTCCAAAAAAGAGGTGCGGGTAGT
CACGACGTCGAGCGTTGACGGCCCTAACAATGCCCGAGGTGGGCGCAGGA
AAAAGACGCCAGTGAGTGGCAAGAAGAGCGTGAACTCGATAAGGAAGCCC
AACACCGAAGACCCCGAGGAGGCCAAGAGGTCAAGAGGTAGCAAGAGGTC
GACCTCGAAGAAGGTAGCTTCAGCCGCCGTAAACTCTCGAGCTGTTACGG
TGAGTATCGCGGACCGAGGGAAAGCGAAGCCCGAAACGGCGAAACCAAGA
CCGAAGACCGCTACCCGTGCAAGGAAGATGGAGGCGAAGCCCGCCGCACA
GAACAGGCGTTCGAAGAGAAGTATGGGAAAGGAGGAGAAAGGGTCGACTG
GGTCTAAACAAAAGATAGCCAAGCGCCTGAGGACCTCTACCATGATTTAA
back to top