mRNA_H-elongata_contig52338.12541.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52338.12541.1
Unique NamemRNA_H-elongata_contig52338.12541.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52338.12541.1 vs. uniprot
Match: A0A6H5KUD7_9PHAE (GT31 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD7_9PHAE)

HSP 1 Score: 781 bits (2016), Expect = 2.490e-269
Identity = 413/717 (57.60%), Postives = 498/717 (69.46%), Query Frame = 3 
Query:   18 TKVAICILTRRGESRRRHVLRQTWLQDVPDGAQISHIFVMGEDHSFTREENALLVAEAEKHRDILIAPYEETVGTDSEKTKYCIYWVTQNHDFDILIKTNDDSMLLLSRLAGKEGWLR-NITGRRELVYFGKKHGLAKVANPTNL------ESGELAG---------TNMIFEFEYRGLYWPEYMEGGMFGLSRRLAEEIVKNDFRTYSLEDAMVGVWASALRADVRYLADEQVLSQEADYHASNGTSIVASFQTDLLRQASMWCEYARLGSVSPRAILVEDTQEALDCLVRLEGSTHVPRSLPLGDCEEHHAVTMAALKREWPIKDRPDLRETGQWWNRMGGVFRGKSAALVGTSATR-DRLPLYLFEGMHTLVLDDFFRVSERYASWSPTMYMCVDPDFCVSYAGTGAV-----QRGRGAAAN-VESANRFARTVSAAFFVLTGSVGGSGYWRYLRQRATAHWFIAGVDEGS----------------TGMGALPGVSAEDRTAPNFRVSSRASSVAMGVEVLSYLGFSPIFITAANEQVETQWG-----EVERAIKVASSAHGAEVVYLYADEGDKLPRMKVDGVG-REGG---------------TMSAQEDMMAWARKRSQDVGKNPEKWDLELFLQNFPMLGRLETLVDRRGTSVKGVFPNSPPCRDADDLDRFQKIVLCPVKVSLKHFPSFLAWHVPYGPVQNTFVWVKR 1988
            T +AICILTRR E +RRH+LRQTWLQDVPDG ++SHIFVMGED S+T EENA L AEAE HRDILIAP EE   T SE+TK+CI+W T++H+FD+L+K +DDS L LSRL G+ GWL      R EL+YFGK+H LAKVANP N+       S  L G         T+ +FEF+YRG+YWPE+MEGGM+GLSR LAEEI+KNDFRTY+ E+A VGVW +   A VRYLADEQVLS+EADY ASNGT++ ASF T  LRQA+MWCEYA LG++SPR+IL +D Q+ LDCL   E S++ PRS PLG  E+H A T+ ++ R WPI   P+  ETG+WW RMGG FRGK AA+VGTSAT  DRLPLYL +GMHTLV+DDFFRVSERY SW PTMYMCVDP+ C S            Q   GA AN VESANRFAR V AAF+VL+G   G+ YW+YLRQR   HWF AG   GS                 GMG   GV+  D +  NFRV S+ S +AMGVEVLSYLGFSPI++ AA E++   WG     E  RA+++A S +G  VVYL AD+ DKLP  +V     R GG                +S QE+++AWA+ RS        +WDL++FLQ+FP + RL+ +  R  ++V+G+FP SP CRDADDLDRFQK VLCPVK SLKHF SFL WH+PYGPVQ  FVWVKR
Sbjct:   52 TNLAICILTRRSEWQRRHLLRQTWLQDVPDGVRVSHIFVMGEDRSYTAEENARLAAEAEAHRDILIAPVEEARDTASERTKHCIHWTTEHHEFDLLVKADDDSTLFLSRLFGRGGWLPPKAVDRGELLYFGKRHALAKVANPANVLDPQADPSAGLTGGGAIEEETETDGVFEFDYRGVYWPEHMEGGMYGLSRGLAEEIIKNDFRTYTNEEATVGVWVAVFDARVRYLADEQVLSREADYLASNGTAVAASFGTRRLRQAAMWCEYAPLGTLSPRSILAKDLQQTLDCLGSYERSSNPPRSQPLGAGEDHQAATLESISRRWPIMAPPNREETGRWWARMGGAFRGKPAAIVGTSATAVDRLPLYLLQGMHTLVMDDFFRVSERYTSWKPTMYMCVDPELCASRGXXXXXXXKKGQSRSGAVANSVESANRFARDVFAAFYVLSGGPEGAQYWQYLRQRVNVHWFDAGAGGGSEQGGVRGGRVPGGATVAGMGPAEGVA--DGSPENFRVLSQESGLAMGVEVLSYLGFSPIYVAAAKEELGGAWGAQKLDECSRAVRLAGSMYGTRVVYLAADDEDKLPAGRVSATSARSGGGKVDAQAAARAGAEGKLSDQENIVAWAKTRSY---AQTARWDLDVFLQHFPAVSRLQVV--RSASTVEGMFPKSPVCRDADDLDRFQKAVLCPVKKSLKHFSSFLTWHIPYGPVQGKFVWVKR 761
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BLAST of mRNA_H-elongata_contig52338.12541.1 vs. uniprot
Match: UPI0005F3DD41 (beta-1,3-galactosyltransferase 6 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F3DD41)

HSP 1 Score: 80.9 bits (198), Expect = 1.560e-12
Identity = 64/219 (29.22%), Postives = 111/219 (50.68%), Query Frame = 3 
Query:   21 KVAICILTRRGESRRRHVLRQTWLQDVPDGAQISHIFVMGEDHSFTREENALLVAEAEKHRDILIAP-YEETVGTDSEKTKYCIYWVTQNHDFDILIKTNDDSMLLLSRLAGKEGWLRNITGRRELVYFGKKHGLAKVANPTNLESGELAGTNMIFEFEYRGLYWPEYMEGGMFGLSRRLAEEIVKND--FRTYSLEDAMVGVWASAL-----RADVRY 653
            ++ + +L+      RR  +R+TWL D   GA + ++FV+G       + N L  +E +K  D+L+ P  +++ GT ++K  + +    + HDFD L+K +DDS +L+ ++  +    ++   RREL Y+G  +G A+V       SG    T+ I        Y+  Y  GG + LS  L + I  N    + ++ ED  VG+W + L     + DVR+
Sbjct:   64 RLVVLVLSGPDNLERRDTIRKTWLADHVQGATVRYLFVVGTQDILPEQRNTLQ-SEKDKFDDLLLLPRLQDSYGTLTKKVLHALKAAHERHDFDYLLKCDDDSYVLVHKILKELDRWQSKGTRREL-YWGFFNGRAQVKR-----SGPWKETDWILCD-----YYLPYALGGGYVLSYNLVKFIAGNSEILKMHNSEDISVGLWLAPLANIERKHDVRF 270
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BLAST of mRNA_H-elongata_contig52338.12541.1 vs. uniprot
Match: UPI000771C759 (beta-1,3-galactosyltransferase 6 n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771C759)

HSP 1 Score: 77.8 bits (190), Expect = 1.840e-11
Identity = 68/240 (28.33%), Postives = 117/240 (48.75%), Query Frame = 3 
Query:   21 KVAICILTRRGESRRRHVLRQTWLQDVPDGAQISHIFVMGEDHSFTREENALLVAEAEKHRDILIAP-YEETVGTDSEKTKYCIYWVTQNHDFDILIKTNDDSMLLLSRLAGKEGWLRNITGRRELVYFGKKHGLAKVANPTNLESGELAGTNMIFEFEYRGLYWPEYMEGGMFGLSRRLAEEIVKN--DFRTYSLEDAMVGVWASAL-----RADVRYLADEQVLSQEADYHASNGTSI 716
            ++ I ILT      RR+++R+TW+ +    + + + F +G   +  +  +  L +E  KH+D+L+ P   ++  T ++K  Y    +T+++DFD L+K +DDS +++  L  KE       G ++ +Y+G  +G A+V        G    TN I        Y+  Y  GG + LS  L + I +N    + YS ED  VGVW + L     + D R+  + Q      DY  ++  SI
Sbjct:   74 ELLIVILTAPDNMERRNIIRRTWMSEKY--SYVKYFFAIG-TVNIQQALHETLQSENHKHKDLLLLPTLRDSYNTITKKVLYSFKQLTEDYDFDFLLKCDDDSYVVIESLL-KELSKWQSRGTQKELYWGYFNGRAQVKR-----HGPWKETNWILCD-----YYLPYALGGGYVLSSNLVKFISRNWEVLKIYSAEDVSVGVWLAPLANIERKHDTRFDTEYQSRGCSNDYIITHKQSI 299
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BLAST of mRNA_H-elongata_contig52338.12541.1 vs. uniprot
Match: UPI001CA894CE (beta-1,3-galactosyltransferase 6 n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA894CE)

HSP 1 Score: 75.9 bits (185), Expect = 6.630e-11
Identity = 61/205 (29.76%), Postives = 101/205 (49.27%), Query Frame = 3 
Query:   66 RHVLRQTWLQDVPDGAQISHIFVMGEDHSFTREENALLVAEAEKHRDILIAP-YEETVGTDSEKTKYCIYWVTQNHDFDILIKTNDDSMLLLSRLAGK-EGWLRNITGRRELVYFGKKHGLAKVANPTNLESGELAGTNMIFEFEYRGLYWPEYMEGGMFGLSRRLAEEIVKN--DFRTYSLEDAMVGVWASAL-----RADVRY 653
            R  +R+TWL +      + ++F +G   +    +   L +E +K  D+L  P  ++T GT ++K     + +   +DFD ++K +DDS +L+SR+  + E W R   G ++ +Y+G  +G A+V       SG    T  I    Y       Y  GG + LS +L E I KN    + Y+ ED  VG+W + +     R DVR+
Sbjct:   76 RDTIRKTWLSEKY--IDVKYLFALG-TLNIHPSQRITLDSEQQKFNDLLFLPNLQDTYGTITKKVLQSFFHIQNEYDFDFILKCDDDSFVLISRILRELERWERE--GTKKYLYWGFFNGKAQVKR-----SGPWKETEWIMCDNYL-----PYALGGGYILSYKLVEFIAKNAEHLKLYNSEDVSVGLWLAPVANIERRHDVRF 265
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BLAST of mRNA_H-elongata_contig52338.12541.1 vs. uniprot
Match: A0A834XIS2_9HYME (Hexosyltransferase n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A834XIS2_9HYME)

HSP 1 Score: 73.2 bits (178), Expect = 4.860e-10
Identity = 61/205 (29.76%), Postives = 102/205 (49.76%), Query Frame = 3 
Query:   21 KVAICILTRRGESRRRHVLRQTWLQDVPDGAQISHIFVMGEDHSFTREENALLVAEAEKHRDILI-APYEETVGTDSEKTKYCIYWVTQNHDFDILIKTNDDSMLLLSRLAGK-EGWLRNITGRRELVYFGKKHGLAKVANPTNLESGELAGTNMIFEFEYRGLYWPEYMEGGMFGLSRRLAEEIVKND--FRTYSLEDAMVGVW 623
            ++ I ILTR    + R  +R+TWL D      I ++F +G +    +E    L +E +K  D+L+ + +++  G+ S K       +  ++DFD L+K +DD+ +L SRL  + + W     G ++ +Y+G  +G A+V      +    AG N+         Y+  Y  GG + LS RL E I  N    R ++ ED  VG+W
Sbjct:   56 RLLIVILTRPDGMKNRDAIRKTWLSDK--NKNIKYLFAIG-NLDVQQETKDTLKSEQDKFGDLLLLSKHQDHYGSLSLKILQAFKMIHADYDFDYLLKCDDDTFVLTSRLLNELDSW--EDRGSKKEIYWGFFNGKAQVKRSGPWKE---AGWNLCD-------YYLPYAVGGGYVLSYRLVEFIAMNADRLRLFNSEDVSVGLW 245
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BLAST of mRNA_H-elongata_contig52338.12541.1 vs. uniprot
Match: A0A154PA43_DUFNO (Hexosyltransferase n=1 Tax=Dufourea novaeangliae TaxID=178035 RepID=A0A154PA43_DUFNO)

HSP 1 Score: 70.5 bits (171), Expect = 4.100e-9
Identity = 63/220 (28.64%), Postives = 108/220 (49.09%), Query Frame = 3 
Query:   21 KVAICILTRRGESRRRHVLRQTWLQDVPDGAQISHIFVMGEDHSFTREENALLVAEAEKHRDILIAP-YEETVGTDSEKTKYCIYWVTQNHDFDILIKTNDDSMLLLSRLAGK-EGWLRNITGRRELVYFGKKHGLAKVANPTNLESGELAGTNMIFEFEYRGLYWPEYMEGGMFGLSRRLAEEIVKND--FRTYSLEDAMVGVWASAL-----RADVRY 653
            ++ I +L+      +R  +R+TWL      A + H+FV+G       E+   L +E  K  D+L+ P   ++ GT ++K  Y +  V + +DFD L+K++DD+ +L+ ++  + E W     G R+ +Y+G  +G A+V       SG    T+ I        Y+  Y  GG + LS  L + I  N    + +  ED  VG+W + L     + DVR+
Sbjct:   66 RLVILVLSSPDNLEQRATIRKTWL--AQKYATVRHLFVIG-TLDILPEQRETLQSEKYKFNDLLLLPRLTDSYGTLTKKVLYALKEVYEYYDFDFLMKSDDDTFILVHKILKELEKW--ESKGTRKELYWGFFNGKAQVKR-----SGPWKETDWILCD-----YYLPYALGGGYVLSYNLVKFIALNMDILKLHKAEDVSVGLWLAPLANIERKHDVRF 270
[Close]
BLAST of mRNA_H-elongata_contig52338.12541.1 vs. uniprot
Match: A0A6H5I550_9HYME (Hexosyltransferase n=2 Tax=Trichogramma TaxID=7490 RepID=A0A6H5I550_9HYME)

HSP 1 Score: 63.5 bits (153), Expect = 6.280e-7
Identity = 61/221 (27.60%), Postives = 105/221 (47.51%), Query Frame = 3 
Query:   21 KVAICILTRRGESRRRHVLRQTWLQD-VPDGAQISHIFVMGEDHSFTREENALLVAEAEKHRDILIAP-YEETVGTDSEKTKYCIYWVTQNHDFDILIKTNDDSMLLLSRLAGK-EGWLRNITGRRELVYFGKKHGLAKVANPTNLESGELAGTNMIFEFEYRGLYWPEYMEGGMFGLSRRLAEEIVKN-DF-RTYSLEDAMVGVWASAL-----RADVRY 653
            ++ + +L+      +R  +R+TWL    PD      I +M    +   E+   L +E +KH DIL+ P   ++  T ++K    + ++ QNH+F+ L+K +DDS  L+ ++  +   W   + G +  +Y+G   G A+V       SG    T+         LY P Y  GG + LS  L   I  N D+ + Y+ ED  +G+W + +     R D R+
Sbjct:   45 RLVVLVLSAPENLEQRDTIRKTWLSGRSPDVKAYFAIGLM----NLRPEQKLTLESEHKKHGDILMLPRLYDSYNTITKKVLQSLTYIHQNHEFEFLLKADDDSFALIDQILRELNRW--QLKGTKRELYWGYFDGRARVKR-----SGPWKETDWFL----CDLYLP-YALGGGYILSYNLVTFIADNADYLKLYNSEDVSMGLWLAPVSNIERRHDTRF 249
[Close]
BLAST of mRNA_H-elongata_contig52338.12541.1 vs. uniprot
Match: A0A6V7LA73_9HYME (Hexosyltransferase (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7LA73_9HYME)

HSP 1 Score: 57.8 bits (138), Expect = 1.120e-5
Identity = 43/139 (30.94%), Postives = 72/139 (51.80%), Query Frame = 3 
Query:   21 KVAICILTRRGESRRRHVLRQTWLQDVPDGAQISHIFVMGEDHSFTREENALLVAEAEKHRDILIAP-YEETVGTDSEKTKYCIYWVTQNHDFDILIKTNDDSMLLLSR-LAGKEGWLRNITGRRELVYFGKKHGLAKV 431
            ++AI ILT     + R  +R+TWL +  +  +  H F +G      +E+   L +E  K  D+L  P  +++ GT ++K    I  +    +FD L+KT+DD+ +LL R L   + W     G R+ +Y+G  +G A V
Sbjct:   33 RLAIIILTSPDSMKIRDTMRKTWLSEATENTR--HYFAIG-TLDLDQEQRETLHSEQSKFHDLLFLPKLQDSYGTLTKKVLQSIQRLYDEIEFDYLLKTDDDTFVLLHRMLLDLDMW--EAKGLRKELYWGFFNGKAHV 166
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BLAST of mRNA_H-elongata_contig52338.12541.1 vs. uniprot
Match: A0A1X7VKE1_AMPQE (Hexosyltransferase n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VKE1_AMPQE)

HSP 1 Score: 58.9 bits (141), Expect = 2.400e-5
Identity = 61/228 (26.75%), Postives = 100/228 (43.86%), Query Frame = 3 
Query:   63 RRHVLRQTWLQ--DVPDGAQISHIFVMGEDHSFTREENALLVAEAEKHRDILIAP-YEETVGTDSEKTKYCIYWVTQNHDFDILIKTNDDSMLLLSRLAGKEGWLRNITGRRELVYFGKKHGLAKVANPTNLESGELAGTNMIFEFEYRGLYWPEYMEGGMFGLSRRLAEEI--VKNDFRTYSLEDAMVGVWASALRA----DVRYLADEQVLSQEADYHASNGTSIV 719
            RR  +R+TWL   +   G +I   FV+G      +E  A+++ E+  ++D+L+   +++     S K  Y   W   +HDFD LIK +DDS + L R       L+N+   + L+Y+G  +G               AG     ++     + P Y  GG + LS +L + I  + +    Y  ED  VG W +  R     D+R+       + E   H  N   I+
Sbjct:   86 RRAAIRRTWLNLYNGLTGVKIVAKFVIG-IRGLAKENLAVMMDESSTYKDMLLFDNFQDIYDNLSLKVLYSFIWAHGDHDFDYLIKVDDDSFVQLDRFVTA---LKNMNCPK-LLYWGYFNGRG---------FPNYAGKWAEKQWTLCPHFLP-YAMGGGYVLSWKLIDLITSINDSLAVYKNEDVTVGAWLAPFRVHRVHDIRF-------NTEGHSHGCNNNYII 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52338.12541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KUD7_9PHAE2.490e-26957.60GT31 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
UPI0005F3DD411.560e-1229.22beta-1,3-galactosyltransferase 6 n=1 Tax=Vollenhov... [more]
UPI000771C7591.840e-1128.33beta-1,3-galactosyltransferase 6 n=1 Tax=Cephus ci... [more]
UPI001CA894CE6.630e-1129.76beta-1,3-galactosyltransferase 6 n=1 Tax=Leptopili... [more]
A0A834XIS2_9HYME4.860e-1029.76Hexosyltransferase n=1 Tax=Aphidius gifuensis TaxI... [more]
A0A154PA43_DUFNO4.100e-928.64Hexosyltransferase n=1 Tax=Dufourea novaeangliae T... [more]
A0A6H5I550_9HYME6.280e-727.60Hexosyltransferase n=2 Tax=Trichogramma TaxID=7490... [more]
A0A6V7LA73_9HYME1.120e-530.94Hexosyltransferase (Fragment) n=1 Tax=Bracon brevi... [more]
A0A1X7VKE1_AMPQE2.400e-526.75Hexosyltransferase n=2 Tax=Amphimedon queenslandic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52338contigH-elongata_contig52338:573..3644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.5
Seed ortholog evalue3.3e-06
Seed eggNOG ortholog12957.ACEP15454-PA
Preferred namebeta3galt6
KEGG koko:K00734
KEGG ReactionR05927
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
GOsGO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0015012,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0030166,GO:0030201,GO:0030203,GO:0030204,GO:0030206,GO:0034645,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0050650,GO:0050654,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510
EggNOG free text desc.Galactosyltransferase
EggNOG OGs38HC9@33154,3BAHR@33208,3CV4I@33213,3SM0P@50557,41YSE@6656,46JUE@7399,KOG2288@1,KOG2288@2759
EC2.4.1.134
COG Functional cat.G
CAZyGT31
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionbeta-1,3-galactosyltransferase 6
Ec32 orthologEc-14_005280.1
Exons1
Model size3072
Cds size1857
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52338.12541.1prot_H-elongata_contig52338.12541.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52338 707..2563 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.3614004-UTR-H-elongata_contig52338:572..7061622930856.3614004-UTR-H-elongata_contig52338:572..706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52338 573..706 +
1691679599.657841-UTR-H-elongata_contig52338:572..7061691679599.657841-UTR-H-elongata_contig52338:572..706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52338 573..706 +
1622930856.389171-UTR-H-elongata_contig52338:2563..36441622930856.389171-UTR-H-elongata_contig52338:2563..3644Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52338 2564..3644 +
1691679599.6809638-UTR-H-elongata_contig52338:2563..36441691679599.6809638-UTR-H-elongata_contig52338:2563..3644Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52338 2564..3644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.377592-CDS-H-elongata_contig52338:706..25631622930856.377592-CDS-H-elongata_contig52338:706..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52338 707..2563 +
1691679599.6719427-CDS-H-elongata_contig52338:706..25631691679599.6719427-CDS-H-elongata_contig52338:706..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52338 707..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52338.12541.1

>prot_H-elongata_contig52338.12541.1 ID=prot_H-elongata_contig52338.12541.1|Name=mRNA_H-elongata_contig52338.12541.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=619bp
MGEDHSFTREENALLVAEAEKHRDILIAPYEETVGTDSEKTKYCIYWVTQ
NHDFDILIKTNDDSMLLLSRLAGKEGWLRNITGRRELVYFGKKHGLAKVA
NPTNLESGELAGTNMIFEFEYRGLYWPEYMEGGMFGLSRRLAEEIVKNDF
RTYSLEDAMVGVWASALRADVRYLADEQVLSQEADYHASNGTSIVASFQT
DLLRQASMWCEYARLGSVSPRAILVEDTQEALDCLVRLEGSTHVPRSLPL
GDCEEHHAVTMAALKREWPIKDRPDLRETGQWWNRMGGVFRGKSAALVGT
SATRDRLPLYLFEGMHTLVLDDFFRVSERYASWSPTMYMCVDPDFCVSYA
GTGAVQRGRGAAANVESANRFARTVSAAFFVLTGSVGGSGYWRYLRQRAT
AHWFIAGVDEGSTGMGALPGVSAEDRTAPNFRVSSRASSVAMGVEVLSYL
GFSPIFITAANEQVETQWGEVERAIKVASSAHGAEVVYLYADEGDKLPRM
KVDGVGREGGTMSAQEDMMAWARKRSQDVGKNPEKWDLELFLQNFPMLGR
LETLVDRRGTSVKGVFPNSPPCRDADDLDRFQKIVLCPVKVSLKHFPSFL
AWHVPYGPVQNTFVWVKR*
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mRNA from alignment at H-elongata_contig52338:573..3644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52338.12541.1 ID=mRNA_H-elongata_contig52338.12541.1|Name=mRNA_H-elongata_contig52338.12541.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3072bp|location=Sequence derived from alignment at H-elongata_contig52338:573..3644+ (Himanthalia elongata Himel1 dioecious)
AGCCGCGCATCGTTCCGACGAAGGTTGCAATATGCATTTTGACGCGAAGG
GGCGAATCGAGAAGGCGACACGTCCTCAGGCAGACGTGGCTACAGGATGT
GCCGGACGGGGCGCAGATCTCGCACATCTTCGTGATGGGGGAAGACCACA
GCTTCACGAGGGAGGAGAATGCCCTGCTTGTCGCAGAGGCGGAGAAGCAC
CGGGATATTCTGATCGCGCCGTACGAAGAGACTGTCGGCACCGACTCGGA
GAAGACGAAGTACTGTATTTACTGGGTCACGCAAAACCACGATTTCGACA
TCCTCATCAAGACCAACGACGACAGTATGCTGTTGCTCTCGCGTCTGGCT
GGGAAGGAGGGGTGGCTACGAAACATCACCGGGCGTCGGGAGCTCGTTTA
CTTTGGCAAGAAGCACGGCCTCGCCAAAGTCGCCAACCCCACAAACTTGG
AATCGGGCGAGCTGGCTGGCACCAATATGATCTTCGAGTTCGAATACCGA
GGGCTGTACTGGCCAGAATACATGGAGGGAGGCATGTTCGGCTTGTCTCG
TCGCCTGGCCGAAGAAATCGTCAAAAACGACTTCCGAACGTACAGCCTCG
AGGATGCCATGGTAGGGGTTTGGGCTTCAGCCCTGCGCGCGGATGTCCGT
TATTTGGCGGACGAACAAGTGCTCTCCCAAGAGGCCGACTACCACGCCAG
CAACGGCACCTCTATTGTGGCGTCTTTCCAGACGGACCTGCTCCGCCAGG
CGTCCATGTGGTGCGAGTACGCCAGGTTGGGTTCAGTGTCTCCGCGCGCC
ATCTTGGTAGAAGATACCCAAGAAGCGCTGGACTGTCTCGTCAGGCTCGA
GGGGTCCACGCATGTCCCCCGATCGCTACCGCTTGGTGATTGCGAAGAAC
ATCACGCAGTCACCATGGCGGCGCTCAAGCGCGAGTGGCCTATCAAGGAC
CGGCCGGACTTGCGAGAGACCGGGCAGTGGTGGAATCGTATGGGGGGAGT
GTTCCGAGGGAAGTCAGCGGCGTTAGTGGGCACGAGTGCGACTCGAGATC
GTCTTCCGTTGTACCTATTCGAAGGGATGCACACGCTCGTCCTCGACGAC
TTCTTCCGAGTGTCGGAGAGGTATGCTTCTTGGTCGCCCACCATGTACAT
GTGCGTTGATCCGGATTTTTGTGTGTCTTACGCTGGAACTGGGGCTGTGC
AACGAGGGCGAGGTGCAGCCGCGAATGTAGAAAGCGCCAACCGGTTTGCG
AGGACGGTAAGCGCCGCCTTTTTCGTCTTGACTGGCAGCGTGGGGGGTTC
AGGTTACTGGCGATATTTGAGGCAGCGTGCCACTGCACATTGGTTTATTG
CAGGGGTGGATGAAGGATCCACAGGAATGGGTGCATTACCTGGAGTATCG
GCGGAGGATAGAACGGCGCCCAATTTCCGAGTTTCGTCACGAGCATCAAG
CGTTGCTATGGGCGTGGAGGTGCTTTCGTACTTAGGCTTTTCGCCCATTT
TTATCACCGCAGCCAACGAGCAGGTGGAGACGCAGTGGGGCGAGGTCGAG
AGGGCGATTAAGGTTGCATCGTCGGCGCACGGAGCTGAGGTTGTATATCT
CTACGCAGACGAGGGGGACAAGTTGCCAAGAATGAAAGTCGACGGGGTGG
GGCGAGAGGGTGGTACGATGAGCGCCCAGGAGGATATGATGGCGTGGGCT
AGGAAAAGGAGTCAAGATGTCGGTAAAAATCCGGAAAAGTGGGATCTGGA
GCTGTTCCTGCAGAACTTCCCGATGTTGGGTCGGCTCGAAACTCTGGTCG
ACCGCAGGGGAACGAGCGTCAAGGGCGTGTTCCCAAACTCTCCACCGTGC
CGCGACGCCGACGACCTCGACCGTTTCCAGAAGATTGTCCTGTGCCCAGT
CAAAGTTTCACTCAAGCACTTTCCGTCGTTCCTGGCCTGGCATGTTCCAT
ACGGCCCGGTACAAAACACGTTTGTTTGGGTGAAGCGATGACGATAAATG
GCCTGGGGGAGAGTAGTGCCGCGAGTCTCTCCATTCAGTCAAGGGGGGAG
GTACGTGTCGAAGATCGTCTCTCGCGGGCTATGGTAGTAGCGTTCACTCC
CCGACCCCCATTGACTGCGACATTTTCCTCTCGTGTTGAAGAAAGAAAGG
GTTGCGTCCATTGAGCTACGGCACGACTATCCTATCAACGTATAGCTGGG
CTTTTGTTTTCGTGCTTGGGAGTGCATTTTATCCTCGTGTACCCATGGGT
TAGAATAGTAGGACGTTGACAGAGCTATATTTTGACTCATTTCCCTACAG
AGCACCGGAGATGTCCGGGCTGGGGTTCGCAGAGTGAACTCGCTCAGTAG
GTTCGGGTGTAGAAGTGAAAGGCTTCGCGATGTAAGATCCTTTGGTATTC
CTTTCTCGAGAGTTGGAATGACTTTGTTTCCTCTTCTTCGCGGTGACAAT
TTTGTGTGTTGTCTTGTTTAACTCTTTGAAGGTTACCGAGAGAGAGAGAG
AGCGAGAGAGATACCGCATGAGGCCCGAGCACCGAGCACCGTTTATTCTG
CTGCTTGCAGTCGTGTGAGCCCCAAATGTTACTGGTTTAAATTGAGTTTG
TATCTTAATTTTAGACAAGCTATAAATCATACAAATATGTCAAAAGACAA
AAATTCGCGAACCTACGTAACTTATTTCGGGGCAATGATATGTTTCATGA
TATTATGTTGACGAATTGCTATATGTCTTCCAACCGCTGTACAGTGCGTA
TAGCGTTGGCGTATCAGTATCATCACCAGACATCCGAAGTATACTACACT
ACAGTATAGTATTGTCTAATAACATCTTAAATACCAACGAAGTGAAGACC
TTGAAGCACGTTGATCAATTCTTCCAACATAGTTTTTCATTTTATGTGGA
CTGTCGCGTTATCCAAATTGCGTACCGGTGGATCGAAATATAAGTTTTCT
CTCGTAGACGCCACGTGTAAAGCCTATGTAGGGCTATGTAGGGCGAACGC
AATATCGGTGAAGTGATGTCGAGTTCGTCCTCCAAATCTTCAATCTTCAA
TCTTCGTCGGTGTTCTTCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig52338:573..3644+

>mRNA_H-elongata_contig52338.12541.1 ID=mRNA_H-elongata_contig52338.12541.1|Name=mRNA_H-elongata_contig52338.12541.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3714bp|location=Sequence derived from alignment at H-elongata_contig52338:573..3644+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGAAGACCACAGCTTCACGAGGGAGGAGAATGCCCTGCTTGTCGC
AGAGGCGGAGAAGCACCGGGATATTCTGATCGCGCCGTACGAAGAGACTG
TCGGCACCGACTCGGAGAAGACGAAGTACTGTATTTACTGGGTCACGCAA
AACCACGATTTCGACATCCTCATCAAGACCAACGACGACAGTATGCTGTT
GCTCTCGCGTCTGGCTGGGAAGGAGGGGTGGCTACGAAACATCACCGGGC
GTCGGGAGCTCGTTTACTTTGGCAAGAAGCACGGCCTCGCCAAAGTCGCC
AACCCCACAAACTTGGAATCGGGCGAGCTGGCTGGCACCAATATGATCTT
CGAGTTCGAATACCGAGGGCTGTACTGGCCAGAATACATGGAGGGAGGCA
TGTTCGGCTTGTCTCGTCGCCTGGCCGAAGAAATCGTCAAAAACGACTTC
CGAACGTACAGCCTCGAGGATGCCATGGTAGGGGTTTGGGCTTCAGCCCT
GCGCGCGGATGTCCGTTATTTGGCGGACGAACAAGTGCTCTCCCAAGAGG
CCGACTACCACGCCAGCAACGGCACCTCTATTGTGGCGTCTTTCCAGACG
GACCTGCTCCGCCAGGCGTCCATGTGGTGCGAGTACGCCAGGTTGGGTTC
AGTGTCTCCGCGCGCCATCTTGGTAGAAGATACCCAAGAAGCGCTGGACT
GTCTCGTCAGGCTCGAGGGGTCCACGCATGTCCCCCGATCGCTACCGCTT
GGTGATTGCGAAGAACATCACGCAGTCACCATGGCGGCGCTCAAGCGCGA
GTGGCCTATCAAGGACCGGCCGGACTTGCGAGAGACCGGGCAGTGGTGGA
ATCGTATGGGGGGAGTGTTCCGAGGGAAGTCAGCGGCGTTAGTGGGCACG
AGTGCGACTCGAGATCGTCTTCCGTTGTACCTATTCGAAGGGATGCACAC
GCTCGTCCTCGACGACTTCTTCCGAGTGTCGGAGAGGTATGCTTCTTGGT
CGCCCACCATGTACATGTGCGTTGATCCGGATTTTTGTGTGTCTTACGCT
GGAACTGGGGCTGTGCAACGAGGGCGAGGTGCAGCCGCGAATGTAGAAAG
CGCCAACCGGTTTGCGAGGACGGTAAGCGCCGCCTTTTTCGTCTTGACTG
GCAGCGTGGGGGGTTCAGGTTACTGGCGATATTTGAGGCAGCGTGCCACT
GCACATTGGTTTATTGCAGGGGTGGATGAAGGATCCACAGGAATGGGTGC
ATTACCTGGAGTATCGGCGGAGGATAGAACGGCGCCCAATTTCCGAGTTT
CGTCACGAGCATCAAGCGTTGCTATGGGCGTGGAGGTGCTTTCGTACTTA
GGCTTTTCGCCCATTTTTATCACCGCAGCCAACGAGCAGGTGGAGACGCA
GTGGGGCGAGGTCGAGAGGGCGATTAAGGTTGCATCGTCGGCGCACGGAG
CTGAGGTTGTATATCTCTACGCAGACGAGGGGGACAAGTTGCCAAGAATG
AAAGTCGACGGGGTGGGGCGAGAGGGTGGTACGATGAGCGCCCAGGAGGA
TATGATGGCGTGGGCTAGGAAAAGGAGTCAAGATGTCGGTAAAAATCCGG
AAAAGTGGGATCTGGAGCTGTTCCTGCAGAACTTCCCGATGTTGGGTCGG
CTCGAAACTCTGGTCGACCGCAGGGGAACGAGCGTCAAGGGCGTGTTCCC
AAACTCTCCACCGTGCCGCGACGCCGACGACCTCGACCGTTTCCAGAAGA
TTGTCCTGTGCCCAGTCAAAGTTTCACTCAAGCACTTTCCGTCGTTCCTG
GCCTGGCATGTTCCATACGGCCCGGTACAAAACACGTTTGTTTGGGTGAA
GCGATGAATGGGGGAAGACCACAGCTTCACGAGGGAGGAGAATGCCCTGC
TTGTCGCAGAGGCGGAGAAGCACCGGGATATTCTGATCGCGCCGTACGAA
GAGACTGTCGGCACCGACTCGGAGAAGACGAAGTACTGTATTTACTGGGT
CACGCAAAACCACGATTTCGACATCCTCATCAAGACCAACGACGACAGTA
TGCTGTTGCTCTCGCGTCTGGCTGGGAAGGAGGGGTGGCTACGAAACATC
ACCGGGCGTCGGGAGCTCGTTTACTTTGGCAAGAAGCACGGCCTCGCCAA
AGTCGCCAACCCCACAAACTTGGAATCGGGCGAGCTGGCTGGCACCAATA
TGATCTTCGAGTTCGAATACCGAGGGCTGTACTGGCCAGAATACATGGAG
GGAGGCATGTTCGGCTTGTCTCGTCGCCTGGCCGAAGAAATCGTCAAAAA
CGACTTCCGAACGTACAGCCTCGAGGATGCCATGGTAGGGGTTTGGGCTT
CAGCCCTGCGCGCGGATGTCCGTTATTTGGCGGACGAACAAGTGCTCTCC
CAAGAGGCCGACTACCACGCCAGCAACGGCACCTCTATTGTGGCGTCTTT
CCAGACGGACCTGCTCCGCCAGGCGTCCATGTGGTGCGAGTACGCCAGGT
TGGGTTCAGTGTCTCCGCGCGCCATCTTGGTAGAAGATACCCAAGAAGCG
CTGGACTGTCTCGTCAGGCTCGAGGGGTCCACGCATGTCCCCCGATCGCT
ACCGCTTGGTGATTGCGAAGAACATCACGCAGTCACCATGGCGGCGCTCA
AGCGCGAGTGGCCTATCAAGGACCGGCCGGACTTGCGAGAGACCGGGCAG
TGGTGGAATCGTATGGGGGGAGTGTTCCGAGGGAAGTCAGCGGCGTTAGT
GGGCACGAGTGCGACTCGAGATCGTCTTCCGTTGTACCTATTCGAAGGGA
TGCACACGCTCGTCCTCGACGACTTCTTCCGAGTGTCGGAGAGGTATGCT
TCTTGGTCGCCCACCATGTACATGTGCGTTGATCCGGATTTTTGTGTGTC
TTACGCTGGAACTGGGGCTGTGCAACGAGGGCGAGGTGCAGCCGCGAATG
TAGAAAGCGCCAACCGGTTTGCGAGGACGGTAAGCGCCGCCTTTTTCGTC
TTGACTGGCAGCGTGGGGGGTTCAGGTTACTGGCGATATTTGAGGCAGCG
TGCCACTGCACATTGGTTTATTGCAGGGGTGGATGAAGGATCCACAGGAA
TGGGTGCATTACCTGGAGTATCGGCGGAGGATAGAACGGCGCCCAATTTC
CGAGTTTCGTCACGAGCATCAAGCGTTGCTATGGGCGTGGAGGTGCTTTC
GTACTTAGGCTTTTCGCCCATTTTTATCACCGCAGCCAACGAGCAGGTGG
AGACGCAGTGGGGCGAGGTCGAGAGGGCGATTAAGGTTGCATCGTCGGCG
CACGGAGCTGAGGTTGTATATCTCTACGCAGACGAGGGGGACAAGTTGCC
AAGAATGAAAGTCGACGGGGTGGGGCGAGAGGGTGGTACGATGAGCGCCC
AGGAGGATATGATGGCGTGGGCTAGGAAAAGGAGTCAAGATGTCGGTAAA
AATCCGGAAAAGTGGGATCTGGAGCTGTTCCTGCAGAACTTCCCGATGTT
GGGTCGGCTCGAAACTCTGGTCGACCGCAGGGGAACGAGCGTCAAGGGCG
TGTTCCCAAACTCTCCACCGTGCCGCGACGCCGACGACCTCGACCGTTTC
CAGAAGATTGTCCTGTGCCCAGTCAAAGTTTCACTCAAGCACTTTCCGTC
GTTCCTGGCCTGGCATGTTCCATACGGCCCGGTACAAAACACGTTTGTTT
GGGTGAAGCGATGA
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