mRNA_H-elongata_contig52289.12535.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52289.12535.1
Unique NamemRNA_H-elongata_contig52289.12535.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.210e-27
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 2
Query:   32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF*KSGAIETFESWT-GEDEDIFDDFPVAFTHFLHLH 337
            QY+E+FFVS+G P+Y+FVVWR+AV+ L+T+Y+ +M  ++++ LA+AH DK FDV+ T+CDGA EHRSF    AI  F  W  G  E  F  F V F H +HLH
Sbjct:  684 QYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLH 786          
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.860e-26
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 2
Query:   32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF*KSGAIETFESWT-GEDEDIFDDFPVAFTHFLHLH 337
            QY+E+FFVS+G P+Y+FVVWR+AV+ L+T+Y+ +M  + ++ LA+AH DK FDVI T CDGA EHRSF    AI  F  W  G  E  F  F V F H +HLH
Sbjct:  593 QYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLH 695          
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.050e-24
Identity = 55/100 (55.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:   32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF*KSGAIETFESWTGED---EDIFDDFPVAFTH 322
            QYLEVF+VS+GNPKY+F V+R+AV+ L+   + +M  +I   L  AH DK FDVIGTVCDGAAEHRSF +  A  TF  W   D   E    D+PVAF H
Sbjct:  441 QYLEVFWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRSFQQHFATTTFSEWAKSDSVFEQRHKDYPVAFKH 540          
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.170e-22
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF*KSGAIETFESWTGED---EDIFDDFPVAFTH 322
            QYLEV++VS+GNPKY+F V+R+AV+ L+   + +M  +I+  L  AH DK  DVIGTVCDGA EHRSF    A  TF  W       E+ F DFP+AF H
Sbjct:  226 QYLEVWWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDVIGTVCDGAGEHRSFQTKLATSTFGEWADPKSRLEERFADFPMAFNH 325          
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.930e-21
Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   41 EVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF*KSGAIETFESWTGED---EDIFDDFPVAFTHFLH 331
            +VF+VSLGNP Y+F V+R+AV+ L    L +M   I+  L  AH+DK FDVIGTVCDGAAEHRSF K  A   F  W   D   E    DF VAF H  H
Sbjct:   58 KVFWVSLGNPTYKFCVFREAVRGLTGPKLARMLDDIMTSLYQAHSDKNFDVIGTVCDGAAEHRSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSH 157          
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.020e-19
Identity = 39/64 (60.94%), Postives = 56/64 (87.50%), Query Frame = 2
Query:   32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAE 223
            QY+E FFVSLGNP+Y+FVVWR+AV+ L+T+Y+ +M ++ ++ L++AH DKGFDV+ TVCDGA+E
Sbjct:  211 QYVE-FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASE 273          
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.200e-17
Identity = 35/62 (56.45%), Postives = 53/62 (85.48%), Query Frame = 2
Query:   32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGA 217
            QY+E++FVS+G P+Y+FVVWR+AV+ L+T+++ +M  ++++ LA+AH DK FDVI TVCDGA
Sbjct:  451 QYVEMYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGA 512          
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.400e-17
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 2
Query:   32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF 235
            QYLEVF+VS+GN KY+F V+R+AVK L    L +M ++++  L   H DK FDVI TVCDGAAEHRSF
Sbjct:  150 QYLEVFWVSIGNLKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAEHRSF 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KVF4_9PHAE3.210e-2752.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI3.860e-2653.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP1_9PHAE4.050e-2455.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE4.170e-2252.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK65_ECTSI3.930e-2153.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R1_ECTSI1.020e-1960.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE1.200e-1756.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQL9_9PHAE2.400e-1760.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52289contigH-elongata_contig52289:1692..2462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size338
Cds size180
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52289.12535.1prot_H-elongata_contig52289.12535.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52289 2088..2462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930855.5114796-UTR-H-elongata_contig52289:1691..18031622930855.5114796-UTR-H-elongata_contig52289:1691..1803Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52289 1692..1803 -
1691679599.3045328-UTR-H-elongata_contig52289:1691..18031691679599.3045328-UTR-H-elongata_contig52289:1691..1803Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52289 1692..1803 -
1622930855.531742-UTR-H-elongata_contig52289:2042..20871622930855.531742-UTR-H-elongata_contig52289:2042..2087Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52289 2043..2087 -
1691679599.3134193-UTR-H-elongata_contig52289:2042..20871691679599.3134193-UTR-H-elongata_contig52289:2042..2087Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52289 2043..2087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930855.5485997-CDS-H-elongata_contig52289:2087..22241622930855.5485997-CDS-H-elongata_contig52289:2087..2224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52289 2088..2224 -
1691679599.3227153-CDS-H-elongata_contig52289:2087..22241691679599.3227153-CDS-H-elongata_contig52289:2087..2224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52289 2088..2224 -
1622930855.567881-CDS-H-elongata_contig52289:2419..24621622930855.567881-CDS-H-elongata_contig52289:2419..2462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52289 2420..2462 -
1691679599.3321629-CDS-H-elongata_contig52289:2419..24621691679599.3321629-CDS-H-elongata_contig52289:2419..2462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52289 2420..2462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52289.12535.1

>prot_H-elongata_contig52289.12535.1 ID=prot_H-elongata_contig52289.12535.1|Name=mRNA_H-elongata_contig52289.12535.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
LEETLESIVASIPRGVFRQPRQSEVQVRGMATGCEVAKHRIPTENDLQNP
KGAGRSACR*
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mRNA from alignment at H-elongata_contig52289:1692..2462-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52289.12535.1 ID=mRNA_H-elongata_contig52289.12535.1|Name=mRNA_H-elongata_contig52289.12535.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=771bp|location=Sequence derived from alignment at H-elongata_contig52289:1692..2462- (Himanthalia elongata Himel1 dioecious)
TTGGAAGAAACGCTGGAAAGCATAGTGGCGTCAATACCTCGAGGTCAGTG TGTATTATTTATGGAAAATGTACACTGCAATGCGAGGGCATCTTCCGATG TACGCGAGCGTAGGGGGAGGGGGGGAAGGGGGGGGAGGGGTAATTCGTGG TATTGGAAACAAAGACATGAATAGCTTTCATATCGCATGACATACACGAT CATGACTCACACTACGTAACCCTCGCTTATTGTCCCAGGTGTTTTTCGTC AGCCTCGGCAATCCGAAGTACAGGTTCGTGGTATGGCGACAGGCTGTGAA GTTGCTAAACACAGAATACCTACTGAAAATGACCTCCAAAATCCTAAAGG GGCTGGCCGTAGCGCATGCCGATAAAGGTTTCGACGTCATTGGAACGGTG TGCGACGGAGCTGCCGAACAGTGAGTACCAACTTGAGGATGTCAATACAA AATTAGAAGATTTTGGTGAATGATTCGTCGATATATATATATTACAAGAG CAATGCAAGATACAGTACGATTTGGATGCTTTATAATGTAACATAGGTCA AAACACCCTGACCGCCTAGCCTAAAGTTGGAAAGATAGCCCCTTAAATAA TTGTAAACCGACACAAGTACACCGCTTATGTACCTTGGTCCCCCTTTTTG CGCGATCAGTCGATCTTTTTAGAAAAGCGGTGCGATAGAGACGTTCGAGT CTTGGACGGGGGAGGACGAAGATATTTTTGATGACTTCCCTGTGGCCTTC ACGCACTTTCTCCACCTTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig52289:1692..2462-

>mRNA_H-elongata_contig52289.12535.1 ID=mRNA_H-elongata_contig52289.12535.1|Name=mRNA_H-elongata_contig52289.12535.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig52289:1692..2462- (Himanthalia elongata Himel1 dioecious)
TTGGAAGAAACGCTGGAAAGCATAGTGGCGTCAATACCTCGAGTTGGAAG
AAACGCTGGAAAGCATAGTGGCGTCAATACCTCGAGGTGTTTTTCGTCAG
CCTCGGCAATCCGAAGTACAGGTTCGTGGTATGGCGACAGGCTGTGAAGT
TGCTAAACACAGAATACCTACTGAAAATGACCTCCAAAATCCTAAAGGGG
CTGGCCGTAGCGCATGCCGATAAGTGTTTTTCGTCAGCCTCGGCAATCCG
AAGTACAGGTTCGTGGTATGGCGACAGGCTGTGAAGTTGCTAAACACAGA
ATACCTACTGAAAATGACCTCCAAAATCCTAAAGGGGCTGGCCGTAGCGC
ATGCCGATAA
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