mRNA_H-elongata_contig52269.12532.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52269.12532.1
Unique NamemRNA_H-elongata_contig52269.12532.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.180e-34
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   10 STISVVFSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGAVSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFPTGY 285
            S +S+ F+NTS E+I+GLVFQAAVPKSFTMKM +LSGH LPP S G VSQ INVTN+MQGTK+LM+KLKIQFRRG   VAEVAQVAQFP G+
Sbjct:  797 SKVSIAFTNTSDEEISGLVFQAAVPKSFTMKMGALSGHNLPPHSDGVVSQEINVTNAMQGTKSLMMKLKIQFRRGTVNVAEVAQVAQFPAGF 888          
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Match: A0A7S2S4J2_9STRA (AP-1 complex subunit gamma n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S4J2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.440e-15
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   16 ISVVFSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGAVSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFPTG 282
            ++ V+SNT   +I+  VFQAAVPK  ++KME  SG  LPP  +G V Q IN+ NSMQG+K +++K+KI +      V + A V+ FP G
Sbjct:  763 VTAVYSNTGGVEISNFVFQAAVPKFISLKMEPPSGDTLPPFGTGQVQQRINLVNSMQGSKDIIMKVKIAYTANGENVVQQATVSGFPQG 851          
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Match: A0A1Y1I093_KLENI (AP-1 complex subunit gamma n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I093_KLENI)

HSP 1 Score: 76.6 bits (187), Expect = 2.940e-14
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 AHPSTISVVFSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGAVSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFP 276
            +  +TI   ++N+     T  VFQAAVPK  T+ +E  SG  +P   +G+V+Q INVTNS+QG K L+++L+I ++   + V E  QV+ FP
Sbjct:  756 SQQTTIKATYTNSGPSPFTDFVFQAAVPKFMTLSLEPASGSVVPAGQAGSVTQTINVTNSLQGQKNLVMRLRISYKVNGSEVLEQGQVSNFP 847          
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Match: A9SLN8_PHYPA (AP-1 complex subunit gamma n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SLN8_PHYPA)

HSP 1 Score: 75.5 bits (184), Expect = 7.440e-14
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   16 ISVVFSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGAVSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFPT 279
            I  +F+NTS    T  +FQAAVPK  T++++  SG  LP  SSG ++Q++ VTNS+ G K L++++KI ++     V E  +V  FP+
Sbjct:  669 IKAIFTNTSTTPYTDFLFQAAVPKFMTLRLDPASGSSLPQNSSGVITQILTVTNSLHGQKPLVMRVKIAYKADGQPVLEQGEVNNFPS 756          
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Match: A0A2K1JQ28_PHYPA (AP-1 complex subunit gamma n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JQ28_PHYPA)

HSP 1 Score: 75.5 bits (184), Expect = 7.560e-14
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   16 ISVVFSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGAVSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFPT 279
            I  +F+NTS    T  +FQAAVPK  T++++  SG  LP  SSG ++Q++ VTNS+ G K L++++KI ++     V E  +V  FP+
Sbjct:  971 IKAIFTNTSTTPYTDFLFQAAVPKFMTLRLDPASGSSLPQNSSGVITQILTVTNSLHGQKPLVMRVKIAYKADGQPVLEQGEVNNFPS 1058          
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Match: A0A7S2Z772_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z772_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 4.170e-13
Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   28 FSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGAVSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFPTG 282
            ++NT    +T  + Q AVP    ++ME  SG+ LPP  +G ++Q IN+ N++QG K LM++LK+ +      V+E+ +V  FP G
Sbjct:   85 YTNTGTFPVTNFIVQVAVPNYIQLRMEPASGNALPPQGAGHIAQKINLNNTVQGQKPLMMRLKVDYVFNGAPVSEIVEVKNFPQG 169          
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Match: A0A2R6W898_MARPO (AP-1 complex subunit gamma n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W898_MARPO)

HSP 1 Score: 68.6 bits (166), Expect = 2.050e-11
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1
Query:   10 STISVVFSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGAVSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFPTG 282
            +TI   + N S    T  +FQAAVPK   +++E  SG  LP    G ++Q IN+TN+M G K+L++KL+I ++       E  QV+ FP G
Sbjct:  820 TTIKASYINLSSNPYTDFIFQAAVPKFLQLQLEPASGSVLPASGGGLITQSINLTNTMHGQKSLLMKLRIIYKINGQDKVEQGQVSNFPQG 910          
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Match: M4BDK4_HYAAE (AP-1 complex subunit gamma n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BDK4_HYAAE)

HSP 1 Score: 67.0 bits (162), Expect = 7.090e-11
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   16 ISVVFSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGAVSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFPT 279
            I+    N++   I   VF AA PK   +KME  +G  +PP SSGAV+QV+ V N++QG K +++++K++F    + V ++A V+ FP+
Sbjct:  760 ITATIRNSTAISIEKFVFLAAFPKYVKLKMEPPTGDAVPPNSSGAVTQVVKVQNTLQGEKPVLMRIKLEFVVNGSKVEDMATVSNFPS 847          
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Match: UPI001EAFAC36 (AP-1 complex subunit gamma-1-like isoform X1 n=7 Tax=Haliotis TaxID=6452 RepID=UPI001EAFAC36)

HSP 1 Score: 65.9 bits (159), Expect = 1.800e-10
Identity = 34/94 (36.17%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 AHPSTISVVFSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGAVSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFPTG 282
            A  + I++  +N+S   I+  VFQAAVPKSF ++++S SG+ LPP++ G V QVI + N  +  + L +++++ + +   A+ E+ +V+ FP G
Sbjct:  740 AEVTIINMKATNSSPTPISEFVFQAAVPKSFQLQLQSPSGNALPPMNDGFVEQVICIQNPSK--QALRMRIRMTYTQSGNAITEMGEVSNFPQG 831          
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Match: A0A6P8H956_ACTTE (AP-1 complex subunit gamma n=3 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H956_ACTTE)

HSP 1 Score: 65.5 bits (158), Expect = 2.460e-10
Identity = 35/91 (38.46%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   10 STISVVFSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGAVSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFPTG 282
            STISV   N+    +T  +FQAAVPK+F ++M+S SG+ +PP ++G+V+Q I V N  Q  + L +++KI ++     ++E  ++ +FP G
Sbjct:  746 STISVNAVNSLSVPMTDFIFQAAVPKTFQLQMQSPSGNMIPPNNTGSVTQKIQVNNPQQ--QPLRMRIKISYKLNGAPISEQGEINKFPPG 834          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52269.12532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP4_ECTSI1.180e-3475.00AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxI... [more]
A0A7S2S4J2_9STRA2.440e-1546.07AP-1 complex subunit gamma n=1 Tax=labyrinthulid q... [more]
A0A1Y1I093_KLENI2.940e-1441.30AP-1 complex subunit gamma n=1 Tax=Klebsormidium n... [more]
A9SLN8_PHYPA7.440e-1440.91AP-1 complex subunit gamma n=1 Tax=Physcomitrium p... [more]
A0A2K1JQ28_PHYPA7.560e-1440.91AP-1 complex subunit gamma n=2 Tax=Physcomitrium p... [more]
A0A7S2Z772_9CHLO4.170e-1337.65Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A2R6W898_MARPO2.050e-1139.56AP-1 complex subunit gamma n=2 Tax=Marchantia poly... [more]
M4BDK4_HYAAE7.090e-1138.64AP-1 complex subunit gamma n=1 Tax=Hyaloperonospor... [more]
UPI001EAFAC361.800e-1036.17AP-1 complex subunit gamma-1-like isoform X1 n=7 T... [more]
A0A6P8H956_ACTTE2.460e-1038.46AP-1 complex subunit gamma n=3 Tax=Actinia tenebro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52269contigH-elongata_contig52269:201..488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue7.3e-30
Seed eggNOG ortholog2880.D7FHP4
KEGG koko:K11279,ko:K12391
KEGG Pathwayko04142,map04142
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930855.105912-CDS-H-elongata_contig52269:200..4881622930855.105912-CDS-H-elongata_contig52269:200..488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52269 201..488 -
1691679599.1732895-CDS-H-elongata_contig52269:200..4881691679599.1732895-CDS-H-elongata_contig52269:200..488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52269 201..488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52269.12532.1prot_H-elongata_contig52269.12532.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52269 201..488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52269.12532.1

>prot_H-elongata_contig52269.12532.1 ID=prot_H-elongata_contig52269.12532.1|Name=mRNA_H-elongata_contig52269.12532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
AHPSTISVVFSNTSVEKITGLVFQAAVPKSFTMKMESLSGHELPPLSSGA
VSQVINVTNSMQGTKTLMVKLKIQFRRGATAVAEVAQVAQFPTGY*
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mRNA from alignment at H-elongata_contig52269:201..488-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52269.12532.1 ID=mRNA_H-elongata_contig52269.12532.1|Name=mRNA_H-elongata_contig52269.12532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig52269:201..488- (Himanthalia elongata Himel1 dioecious)
GCGCATCCTAGCACCATCTCCGTTGTCTTCAGCAACACTTCGGTCGAGAA GATTACGGGTTTGGTGTTCCAGGCAGCGGTGCCGAAGTCCTTCACGATGA AGATGGAGTCTTTGTCCGGACACGAGCTGCCCCCCCTCAGCTCTGGCGCC GTCTCCCAAGTGATCAATGTGACCAATTCCATGCAGGGTACGAAGACCCT CATGGTTAAGCTCAAGATTCAGTTCCGCCGTGGGGCGACAGCCGTCGCAG AAGTTGCTCAAGTGGCCCAATTTCCCACAGGATACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig52269:201..488-

>mRNA_H-elongata_contig52269.12532.1 ID=mRNA_H-elongata_contig52269.12532.1|Name=mRNA_H-elongata_contig52269.12532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig52269:201..488- (Himanthalia elongata Himel1 dioecious)
GCGCATCCTAGCACCATCTCCGTTGTCTTCAGCAACACTTCGGTCGAGAA
GATTACGGGTTTGGTGTTCCAGGCAGCGGTGCCGAAGTCCTTCACGATGA
AGATGGAGTCTTTGTCCGGACACGAGCTGCCCCCCCTCAGCTCTGGCGCC
GTCTCCCAAGTGATCAATGTGACCAATTCCATGCAGGGTACGAAGACCCT
CATGGTTAAGCTCAAGATTCAGTTCCGCCGTGGGGCGACAGCCGTCGCAG
AAGTTGCTCAAGTGGCCCAATTTCCCACAGGATACTAGGCGCATCCTAGC
ACCATCTCCGTTGTCTTCAGCAACACTTCGGTCGAGAAGATTACGGGTTT
GGTGTTCCAGGCAGCGGTGCCGAAGTCCTTCACGATGAAGATGGAGTCTT
TGTCCGGACACGAGCTGCCCCCCCTCAGCTCTGGCGCCGTCTCCCAAGTG
ATCAATGTGACCAATTCCATGCAGGGTACGAAGACCCTCATGGTTAAGCT
CAAGATTCAGTTCCGCCGTGGGGCGACAGCCGTCGCAGAAGTTGCTCAAG
TGGCCCAATTTCCCACAGGATACTAG
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