prot_H-elongata_contig52222.12524.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52222.12524.1
Unique Nameprot_H-elongata_contig52222.12524.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length35
Homology
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BLAST of mRNA_H-elongata_contig52222.12524.1 vs. uniprot
Match: A0A2I0TSC9_LIMLA (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Limosa lapponica baueri TaxID=1758121 RepID=A0A2I0TSC9_LIMLA)

HSP 1 Score: 46.6 bits (109), Expect = 7.960e-5
Identity = 20/35 (57.14%), Postives = 30/35 (85.71%), Query Frame = 0 
Query:    1 ATSDKFVGAGLLSLSVIIFVYYTLWVIILVRTSPA 35
            + +D+ VG GL++ S+++FVYYTLW+I+LVR SPA
Sbjct:  199 SATDQVVGFGLVAFSLVLFVYYTLWIIVLVRLSPA 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52222.12524.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2I0TSC9_LIMLA7.960e-557.14Dolichol phosphate-mannose biosynthesis regulatory... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009914Dolichol phosphate-mannose biosynthesis regulatoryPFAMPF07297DPM2coord: 3..29
e-value: 3.2E-8
score: 33.8
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..35
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52222contigH-elongata_contig52222:3810..3914 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52222.12524.1mRNA_H-elongata_contig52222.12524.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52222 3810..3914 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52222.12524.1 ID=prot_H-elongata_contig52222.12524.1|Name=mRNA_H-elongata_contig52222.12524.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
ATSDKFVGAGLLSLSVIIFVYYTLWVIILVRTSPA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009914DPM2