mRNA_H-elongata_contig52216.12522.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52216.12522.1
Unique NamemRNA_H-elongata_contig52216.12522.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Match: D8LM01_ECTSI (Similar to insulin-degrading enzyme n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM01_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 9.750e-51
Identity = 81/101 (80.20%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEHSNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRPEEGIDTRASLV 303
            YTA ESTNYYFDV+S HLRGA DRF+QFF+ PLF+ S++ERE+QAV+SEHSNNKN+D+WR++QVLKATANP+HAFSKFGSGNYETLRPRPEEG+DTRASL+
Sbjct:  165 YTATESTNYYFDVKSSHLRGATDRFAQFFRTPLFAESAIEREMQAVDSEHSNNKNEDTWRIYQVLKATANPSHAFSKFGSGNYETLRPRPEEGVDTRASLI 265
[Close]
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Match: A0A2J8Y589_PONAB (IDE isoform 8 (Fragment) n=1 Tax=Pongo abelii TaxID=9601 RepID=A0A2J8Y589_PONAB)

HSP 1 Score: 124 bits (312), Expect = 2.930e-33
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEHSNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRP-EEGIDTRASLV 303
            +T+ E TNYYFDV   HL GA+DRF+QFF  PLF  S  +RE+ AV+SEH  N  +D+WRLFQ+ KAT NP H FSKFG+GN  TL  RP +EGID R  L+
Sbjct:  127 FTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELL 228
[Close]
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Match: UPI0005223DB9 (insulin-degrading enzyme-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI0005223DB9)

HSP 1 Score: 123 bits (309), Expect = 3.460e-33
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEHSNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRP-EEGIDTRASLV 303
            +T+ E TNYYFDV   HL GA+DRF+QFF  PLF  S  +RE+ AV+SEH  N  +D+WRLFQ+ KAT NP H FSKFG+GN  TL  RP +EGID R  L+
Sbjct:  100 FTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNLMNDAWRLFQLEKATGNPNHPFSKFGTGNKLTLETRPTKEGIDVRQELL 201
[Close]
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Match: UPI000E1EF88E (insulin-degrading enzyme-like n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=UPI000E1EF88E)

HSP 1 Score: 123 bits (309), Expect = 8.440e-33
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEHSNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRP-EEGIDTRASLV 303
            +T+ E TNYYFDV   HL GA+DRF+QFF  PLF  S  +RE+ AV+SEH  N  +D+WRLFQ+ KAT NP H FSKFG+GN  TL  RP +EGID R  L+
Sbjct:  100 FTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNLMNDAWRLFQLEKATGNPNHPFSKFGTGNKLTLETRPTKEGIDVRQELL 201
[Close]
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Match: H3CAE5_TETNG (Peptidase_M16 domain-containing protein n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CAE5_TETNG)

HSP 1 Score: 122 bits (307), Expect = 8.500e-33
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEHSNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRP-EEGIDTRASLV 303
            +T+ E TNYYFD+   HL+GA+DRF+QFF  PLF  S  +RE+ AV+SEH  N  +D+WRLFQ+ KAT NP H FSKFG+GN  TL  RP ++GID R  L+
Sbjct:  100 FTSGEHTNYYFDISHEHLQGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNLMNDAWRLFQLEKATGNPNHPFSKFGTGNKLTLETRPSQQGIDVRQELL 201
[Close]
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Match: A0A7I2V4A4_HUMAN (Insulin-degrading enzyme n=2 Tax=Homininae TaxID=207598 RepID=A0A7I2V4A4_HUMAN)

HSP 1 Score: 124 bits (312), Expect = 9.110e-32
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEHSNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRP-EEGIDTRASLV 303
            +T+ E TNYYFDV   HL GA+DRF+QFF  PLF  S  +RE+ AV+SEH  N  +D+WRLFQ+ KAT NP H FSKFG+GN  TL  RP +EGID R  L+
Sbjct:  141 FTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELL 242
[Close]
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Match: A0A2Y9RMV3_TRIMA (insulin-degrading enzyme isoform X3 n=9 Tax=Eutheria TaxID=9347 RepID=A0A2Y9RMV3_TRIMA)

HSP 1 Score: 126 bits (317), Expect = 9.960e-32
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEHSNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRP-EEGIDTRASLV 303
            +T+ E TNYYFDV   HL GA+DRF+QFF  PLF AS  +RE+ AV+SEH  N  +D+WRLFQ+ KAT NP H FSKFG+GN  TL  RP +EGID R  L+
Sbjct:  141 FTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELL 242
[Close]
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Match: A0A8C8TVW1_PERMB (Insulin degrading enzyme n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=A0A8C8TVW1_PERMB)

HSP 1 Score: 126 bits (317), Expect = 9.990e-32
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEHSNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRP-EEGIDTRASLV 303
            +T+ E TNYYFDV   HL GA+DRF+QFF  PLF AS  +RE+ AV+SEH  N  +D+WRLFQ+ KAT NP H FSKFG+GN  TL  RP +EGID R  L+
Sbjct:  141 FTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELL 242
[Close]
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Match: UPI0013F32A79 (LOW QUALITY PROTEIN: insulin-degrading enzyme n=1 Tax=Rattus rattus TaxID=10117 RepID=UPI0013F32A79)

HSP 1 Score: 126 bits (317), Expect = 1.000e-31
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEHSNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRP-EEGIDTRASLV 303
            +T+ E TNYYFDV   HL GA+DRF+QFF  PLF AS  +RE+ AV+SEH  N  +D+WRLFQ+ KAT NP H FSKFG+GN  TL  RP +EGID R  L+
Sbjct:  141 FTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELL 242
[Close]
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Match: A0A444UM53_ACIRT (Insulin-degrading enzyme n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UM53_ACIRT)

HSP 1 Score: 122 bits (307), Expect = 1.200e-31
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEHSNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRP-EEGIDTRASLV 303
            +T+ E TNYYFDV   HL GA+DRF+QFF  PLF  S  +RE+ AV+SEH  N  +D+WRLFQ+ KAT NP H FSKFG+GN  TL  RP +EGID R  L+
Sbjct:  231 FTSGEHTNYYFDVSHEHLAGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNLMNDAWRLFQLEKATGNPNHPFSKFGTGNKLTLETRPSKEGIDIRQELL 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52216.12522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM01_ECTSI9.750e-5180.20Similar to insulin-degrading enzyme n=2 Tax=Ectoca... [more]
A0A2J8Y589_PONAB2.930e-3358.82IDE isoform 8 (Fragment) n=1 Tax=Pongo abelii TaxI... [more]
UPI0005223DB93.460e-3358.82insulin-degrading enzyme-like n=2 Tax=Neognathae T... [more]
UPI000E1EF88E8.440e-3358.82insulin-degrading enzyme-like n=1 Tax=Dromaius nov... [more]
H3CAE5_TETNG8.500e-3356.86Peptidase_M16 domain-containing protein n=2 Tax=Te... [more]
A0A7I2V4A4_HUMAN9.110e-3258.82Insulin-degrading enzyme n=2 Tax=Homininae TaxID=2... [more]
A0A2Y9RMV3_TRIMA9.960e-3259.80insulin-degrading enzyme isoform X3 n=9 Tax=Euther... [more]
A0A8C8TVW1_PERMB9.990e-3259.80Insulin degrading enzyme n=1 Tax=Peromyscus manicu... [more]
UPI0013F32A791.000e-3159.80LOW QUALITY PROTEIN: insulin-degrading enzyme n=1 ... [more]
A0A444UM53_ACIRT1.200e-3158.82Insulin-degrading enzyme n=1 Tax=Acipenser ruthenu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52216contigH-elongata_contig52216:797..1675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue1.2e-43
Seed eggNOG ortholog2880.D8LM01
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.1454394-CDS-H-elongata_contig52216:796..9101622930854.1454394-CDS-H-elongata_contig52216:796..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52216 797..910 -
1691679598.8425283-CDS-H-elongata_contig52216:796..9101691679598.8425283-CDS-H-elongata_contig52216:796..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52216 797..910 -
1622930854.1591237-CDS-H-elongata_contig52216:1486..16751622930854.1591237-CDS-H-elongata_contig52216:1486..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52216 1487..1675 -
1691679598.8542156-CDS-H-elongata_contig52216:1486..16751691679598.8542156-CDS-H-elongata_contig52216:1486..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52216 1487..1675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52216.12522.1prot_H-elongata_contig52216.12522.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52216 797..1675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52216.12522.1

>prot_H-elongata_contig52216.12522.1 ID=prot_H-elongata_contig52216.12522.1|Name=mRNA_H-elongata_contig52216.12522.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
YTAAESTNYYFDVESRHLRGAVDRFSQFFQRPLFSASSLERELQAVESEH
SNNKNDDSWRLFQVLKATANPAHAFSKFGSGNYETLRPRPEEGIDTRASL
V
back to top

mRNA from alignment at H-elongata_contig52216:797..1675-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52216.12522.1 ID=mRNA_H-elongata_contig52216.12522.1|Name=mRNA_H-elongata_contig52216.12522.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=879bp|location=Sequence derived from alignment at H-elongata_contig52216:797..1675- (Himanthalia elongata Himel1 dioecious)
TACACGGCCGCGGAGTCAACCAATTACTATTTCGACGTGGAAAGTCGCCA
CTTGAGGGGCGCCGTGGATCGATTCTCCCAGTTCTTTCAGCGCCCGCTGT
TCTCTGCATCCTCGCTGGAAAGAGAGCTACAGGCGGTGGAATCGGAGCAC
TCGAACAACAAAAACGATGATTCCTGGAGGCTGTTTCAGGTGGGTGCAGT
GCGGTAAGCGTCAGGTGGTGTTGCTTGCTTTTCTTGGTGCGCTTAAAATG
GGTTATTAGTTATTGGTTATTATCTCATCAGTTTCTCGCTTTTTTTGTTC
GATTTTGTTGTTAACTCTTTATTTATTTTTTTAAACACATAAAACTATTT
CCAGTATTGGCATCAATGAATCAATTAAGTTGTTTTCTCAAGAGCTCTTA
TTCTTATTATAATAGTCTTGTTATTTAGTATATTTTCTTGTTTTGTTATT
TGCTCATTTAGCCTACTGATATATCTTAATTTGTTTATTGTTAAATATTT
AGAAATATATTATATTGTAACTATACAGTATTATTGTACCGTACTGTGTT
CTAGTATAGTATAGTAAGCATAGTAGAGTATCGAACAGTGTGGTTTTCCC
CGCATTTCGTCCGCCTCCCCCCCCCTCCCCTCCCCCCCCCAATCCCCGTG
ACATCCTCGCCTCCAACGAACAGACCTCGTAAATATACGATATGAATGTA
TGGTGTTGGGATGGGTGGCGCAAACGCCTCTCGTAATCGAACCACTTGCC
TGCTTTTGCTGGCAGGTGCTGAAGGCCACCGCAAATCCCGCCCACGCCTT
CTCCAAGTTTGGTTCGGGAAACTACGAAACCCTCAGACCGAGGCCGGAAG
AAGGCATCGACACGAGAGCATCCTTGGTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig52216:797..1675-

>mRNA_H-elongata_contig52216.12522.1 ID=mRNA_H-elongata_contig52216.12522.1|Name=mRNA_H-elongata_contig52216.12522.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig52216:797..1675- (Himanthalia elongata Himel1 dioecious)
TACACGGCCGCGGAGTCAACCAATTACTATTTCGACGTGGAAAGTCGCCA
CTTGAGGGGCGCCGTGGATCGATTCTCCCAGTTCTTTCAGCGCCCGCTGT
TCTCTGCATCCTCGCTGGAAAGAGAGCTACAGGCGGTGGAATCGGAGCAC
TCGAACAACAAAAACGATGATTCCTGGAGGCTGTTTCAGTACACGGCCGC
GGAGTCAACCAATTACTATTTCGACGTGGAAAGTCGCCACTTGAGGGGCG
CCGTGGATCGATTCTCCCAGTTCTTTCAGCGCCCGCTGTTCTCTGCATCC
TCGCTGGAAAGAGAGCTACAGGCGGTGGAATCGGAGCACTCGAACAACAA
AAACGATGATTCCTGGAGGCTGTTTCAGGTGCTGAAGGCCACCGCAAATC
CCGCCCACGCCTTCTCCAAGTTTGGTTCGGGAAACTACGAAACCCTCAGA
CCGAGGCCGGAAGAAGGCATCGACACGAGAGCATCCTTGGTCGTGCTGAA
GGCCACCGCAAATCCCGCCCACGCCTTCTCCAAGTTTGGTTCGGGAAACT
ACGAAACCCTCAGACCGAGGCCGGAAGAAGGCATCGACACGAGAGCATCC
TTGGTC
back to top