mRNA_H-elongata_contig52190.12513.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52190.12513.1
Unique NamemRNA_H-elongata_contig52190.12513.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.620e-61
Identity = 166/500 (33.20%), Postives = 240/500 (48.00%), Query Frame = 1
Query:    4 ARSKELVVATWNVRTMSEIGTNGPGHGE-DLLIFAAKYECDFIAIQETHRDGRTTIQASAAGYVVHYSGHCYGDGGKPRILGVGLAVSESIARAFGPDGTVPEHISARLLKVRVIFKHRAVTTFIVGYAP-----TETAAICHKSKLWKELCSTVAEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGTLSDNGSRLLACAAEHKLSIVNTFFSTPKRWGNSDAFIYEGPKESHRWCLDYILVRQHGRRLVRNITVHP----------KIKSDHRLVSAP---------------------------------IRLLE-----------------------RNAPNRRLRPEEG----------HHGVPFDRKILTYD------------QRWRATVAQE-----IEVKEGVGKLGNGKAVGIDNVCGELLKLGLSKNSAILKCFHNIVVAVWQQEVVPQEWKDAIITMLFKKGNPYECGNFRGILLGAHAGK 1206
            AR  ++   T+NVRT++  G N  GH    ++   +   CD I +QET R+G+ +I     GYVV +SG   G   K  + GVG+A+ E++  + G +G   E IS RL+KVR+        TF+VGYAP     T    +  K  LW  L + + EV + DHL+++MD+NAHTGGR +G    D +++G YGR  +++NG R L  A  ++LS+ NT+F TPK  G          K   ++ LD+IL+RQ  RR V+ + VH           K K   R VS                                   +R LE                       R+  ++ ++ E+G               +  K+L               +RW   V  +     +EV+E V ++ N KAVG D++  EL+KL L  +  +L+ FH IVV VWQ   VPQ+WKDA I +LFKKG+  ECGN+RGI L A+AGK
Sbjct:  118 AREDDVSFGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHD--GYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDAAIREVHSRDHLVVLMDANAHTGGRRDG--CCDAKIMGAYGRDIMNNNGERFLGLALGNQLSLTNTYFRTPK--GGVQHTFQSSNKGKEKYGLDFILMRQTDRRFVQRL-VHERSAARDSEASKEKQQLRGVSKTSAFEATLKAMFKAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPRIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAYAGK 610          
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 3.020e-59
Identity = 187/615 (30.41%), Postives = 247/615 (40.16%), Query Frame = 1
Query:    4 ARSKELVVATWNVRTMSEIGTNGPGHGE-DLLIFAAKYECDFIAIQETHRDGRTTIQASAAGYVVHYSGHCYGDGGKPRILGVGLAVSESIARAFGPDGTVPEHISARLLKVRVIFKHRAVTTFIVGYAPTETAA------ICHKSKLWKELCSTVAEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGTLSDNGSRLLACAAEHKLSIVNTFFSTPKRWGNSDAFIYEGPKESHRWCLDYILVRQHGRRLVRNITV-HPKIK-SDHRLVSAPIRLLERNAPNRRLRPEEGHHGVPFDRKILTYD--------------------------------------------------------------------------------------------------------QRWRAT--------------------------------------VAQEI---------------------------------------------------------EVKEGVGKLGNGKAVGIDNVCGELLKLGLSKNSAILKCFHNIVVAVWQQEVVPQEWKDAIITMLFKKGNPYECGNFRGILLGAHAGKVVLKVV 1224
            AR  +L   T+NVRT++  G N  GH    ++   A  +CD I +QET R G+  I     GYV+ +SG   G   K  + GVG+A+ E++  + G  G   E IS RL+KVR+        TF+VGYAPTETA       +  K   W  L + + EV + DHL+++MD+NA TG R +G    D +++G YGR  +++NG RLL  AA+++LS++NT+F TPK             KE HR  LD+IL+RQ  RRLVRN +V     K SDH LV   +R   R APNRR R   G   +  D + L  D                                                                                                         RWRA                                        +Q I                                                         EV+E V  + N KAVG D++  EL+KL L  +   L+ FH IVV VWQ   VPQ+WKDA I +LFKKG+  ECGN+RGI L AHAGKV+LKVV
Sbjct:   85 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSRPTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSEAQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVV 693          
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 7.740e-54
Identity = 175/585 (29.91%), Postives = 231/585 (39.49%), Query Frame = 1
Query:   91 LLIFAAKYECDFIAIQETHRDGRTTIQASAAGYVVHYSGHCYGDGGKPRILGVGLAVSESIARAFGPDGTVPEHISARLLKVRVIFKHRAVTTFIVGYAPTETAA------ICHKSKLWKELCSTVAEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGTLSDNGSRLLACAAEHKLSIVNTFFSTPKRWGNSDAFIYEGPKESHRWCLDYILVRQHGRRLVRNITV-HPKIK-SDHRLVSAPIRLLERNAPNRRLRPEEGHHGVPFDRKILTYD--------------------------------------------------------------------------------------------------------QRWRAT--------------------------------------VAQEI---------------------------------------------------------EVKEGVGKLGNGKAVGIDNVCGELLKLGLSKNSAILKCFHNIVVAVWQQEVVPQEWKDAIITMLFKKGNPYECGNFRGILLGAHAGKVVLKVV 1224
            ++   A  +CD I +QET R G+  I     GYV+ +SG   G   K  + GVG+A+ E++  + G  G   E IS RL+KVR+        TF+VGYAPTETA       +  K   W  L + + EV + DHL+++MD+NA TG R +G    D +++G YGR  +++NG RLL  AA+++LS++NT+F TPK             KE HR  LD+IL+RQ  RRLVRN +V     K SDH LV   +R   R APNRR R   G   +  D + L  D                                                                                                         RWRA                                        +Q I                                                         EV+E V  + N KAVG D++  EL+KL L  +   L+ FH IVV VWQ   VPQ+WKDA I +LFKKG+  ECGN+RGI L AHAGKV+LKVV
Sbjct:    3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSRPTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSEAQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVV 581          
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Match: A0A6H5KAA3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA3_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 6.570e-44
Identity = 141/418 (33.73%), Postives = 199/418 (47.61%), Query Frame = 1
Query:  118 CDFIAIQETHRDGRTTIQASAAGYVVHYSGHCYGDGGKPRILGVGLAVSESIARAFGPDGTVPEHISARLLKVRVIFKHRAVTTFIVGYAPTETAA------ICHKSKLWKELCSTVAEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGT----------------------------LSDNGS-----RLLACAAEHKLSI-----VNTFFSTPKRWGNSDAFIYEGPKESHRWCLDYILVRQHGRRLVRNITVHPKIKSDHRLVSAPIRLLERNAPNRRLRPEEGHHGVPFDRKILTYDQRWRATVAQE-----IEVKEGVGKLGNGKAVGIDNVCGELLKLGLSKNSAILKCFHNIVVAVWQQEVVPQEWKDAIITMLFKKGNPYECGNFRGILLGAHAGKVVLKVV 1224
            CD I +QET R G+ +I     GYV+ +SG   G   K  + GVG+A+ E++  + G +G   E IS RL+KVR+        TF+VGYAP+ET        +  K   W  L + + EV + DHL+++MD+NA TG R +     D +++G   RG                              S N +     + +  AA  K SI     + TFF    R     +   EG +      L  I V+  G+R   + T       D +++  P  + +R A  R             D       +RW   V  +     +EV+E V  + N KAVG D++  EL+KL L  +  +L+ FH IVV VWQ   VPQ+WKD  I +LFKKG+  ECGN+RGI L AHAGKV+LKVV
Sbjct:   12 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPSETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDW--CCDAKIMGACARGQRGWYTSEAQQEISXXXXXXXXXXXXXXGASKNSAFEATLKAMLKAARKKRSIARWRALETFFEGYVRQLEKKS--REGDQAGFYRHLKMIDVK--GKR---SFTSQNIKYEDGKVLWDPTFIRQRWA--RWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDTTIKVLFKKGDTMECGNYRGISLVAHAGKVMLKVV 416          
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Match: A0A6H5K6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H7_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 3.250e-41
Identity = 105/272 (38.60%), Postives = 153/272 (56.25%), Query Frame = 1
Query:  133 IQETHRDGRTTIQASAAGYVVHYSGHCYGDGGKPRILGVGLAVSESIARAFGPDGTVPEHISARLLKVRVIFKHRAVTTFIVGYAPTETAA------ICHKSKLWKELCSTVAEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGTLSDNGSRLLACAAEHKLSIVNTFFSTPKRWGNSDAFIYEGPKESHRWCLDYILVRQHGRRLVRNITV-HPKIK-SDHRLVSAPIRLLERNAPNRRLRPEEGHHGVPFDRKILTYDQRWR 924
            +QET R G+ +I     GYV+ +SG   G   K  + GVG+A+ E++  + G +G   E IS RL+KVR+        TF+VGYAP ETA       +  K   W  L + + EV + DHL+++MD+NA TG R +G    D +++G YGR  +++NG RLL  A++++LS+ NT+F TP+  G          K   ++ LD+IL+RQ  RR VRN++V     K SD  LV   +RL  R APNRR+R   G   +  D + L  D+  R
Sbjct:   12 LQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPMETARTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPE--GGVQHTFRSSNKGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDQYLVLTTVRLSPRVAPNRRVRGNSGSSRIRIDLERLRKDKHLR 277          
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 6.700e-41
Identity = 94/230 (40.87%), Postives = 133/230 (57.83%), Query Frame = 1
Query:   91 LLIFAAKYECDFIAIQETHRDGRTTIQASAAGYVVHYSGHCYGDGGKPRILGVGLAVSESIARAFGPDGTVPEHISARLLKVRVIFKHRAVTTFIVGYAPTETAA------ICHKSKLWKELCSTVAEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGTLSDNGSRLLACAAEHKLSIVNTFFSTPKRWGNSDAFIYEGPKESHRWCLDYILVRQHGRRLVR 762
            ++   A  +CD I +QET R G+  I     GYV+ +SG   G   K  + GVG+A+ E++  + G  G   E IS RL+KVR+        TF+VGYAPTETA       +  K   W  L + + EV + DHL+++MD+NA TG R +G    D +++G YGR  +++NG RLL  AA+++LS++NT+  TPK  G          KE HR  LD+IL+RQ  RRLVR
Sbjct:    3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYIRTPK--GVHTFQSSNKGKEKHR--LDFILMRQTDRRLVR 224          
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 3.910e-39
Identity = 117/309 (37.86%), Postives = 162/309 (52.43%), Query Frame = 1
Query:   19 LVVATWNVRTMSEIGTNGPGHGEDLLIFAAKYECDFIAIQETHRDGRTTIQASAAGYVVHYSGHCYGDGGKPRILGVGLAVSESIARAFGPDGTVPEHISARLLKVRVIFK-HRAVTTFIVGYAPTETAAICHKSKLWKELCSTVAEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGTLSDNGSRLLACAAEHKLSIVNTFFSTPKR--WGNSDAFIYEGPKESHRWCLDYILVRQ--HGRRLVRNITVHP------KIKSDHRLVSAPIRLLERNAPNRRLRPEEGHHGVPFDRKILTYD 912
            L VATWNVRT++ IG NG G    +L  AA+ +   + +QET R GRT    +AAG+ V   G   G      + GVG+AV ES+ +         E I  RL+ +R++   HR    F+   APTE +    K   W +L S V  +P+ + + +++D+NA TG R +G   GD RV+G YGR  L+DNG  LL  A E++L++ NTFF T K   W       Y G   +    LDYIL RQ  HGR  V N+ V P      K  SDH +V A + L  R A NR +R +       F+R+ L ++
Sbjct:   58 LRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEF--AAAGFRVFCCGTETGG-----VHGVGIAVKESLCKT---STFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDG---GDGRVIGMYGRDELNDNGMLLLNFATENRLALTNTFFETRKGGIWHT-----YNGVSGNDCKRLDYILTRQAHHGR--VSNVVVIPQPVRPVKADSDHNMVVATVNLGGRLAHNRAVRTKPKQK--QFNRQELQFE 344          
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 7.380e-39
Identity = 114/291 (39.18%), Postives = 150/291 (51.55%), Query Frame = 1
Query:   19 LVVATWNVRTMSEIGTNGPGHGEDLLIFAAKYECDFIAIQETHRDGRTTIQASAAGYVVHYSGHCYGDGGKPRILGVGLAVSESIARAFGPDGTVPEHISARLLKVRVIFK-HRAVTTFIVGYAPTETAAICHKSKLWKELCSTVAEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGTLSDNGSRLLACAAEHKLSIVNTFFSTPKR--WGNSDAFIYEGPKESHRWCLDYILVRQ--HGRRLVRNITVHP------KIKSDHRLVSAPIRLLERNAPNRRLR 858
            L VATWNVRT++  G NG G    +L  AA+ +   + +QET R GRT    +AAG+ V   G   G      + GVG+AV ES+ +         E I   L+ +R +   HR    F+  YAPTE +    K   W +L S V  +P+ + + ++MD+NA TG R +G   GD RV+G YGR  L+DNG  LL  A  ++L++ NTFF T K   W       Y G   +    LDYIL RQ  HGR  V N+ V P      K  SDH +V A I L  R A NR  R
Sbjct:  113 LRVATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEF--AAAGFRVFCCGTETGG-----VHGVGIAVKESLCKT---STFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTEPSTADSKRVFWGKLDSLVRRIPSKECVHVLMDANARTGDRLDG---GDGRVIGMYGRDELNDNGMLLLNFATGNRLALTNTFFETRKGGIWHT-----YNGVSGNDCKRLDYILTRQAHHGR--VSNVVVIPQPVRPVKADSDHNMVVATINLGGRLAHNRAAR 383          
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Match: A0A6H5KL25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL25_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.120e-35
Identity = 89/224 (39.73%), Postives = 125/224 (55.80%), Query Frame = 1
Query:  280 AFGPDGTVPEHISARLLKVRVIFKHRAVTTFIVGYAPTETAA------ICHKSKLWKELCSTVAEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGTLSDNGSRLLACAAEHKLSIVNTFFSTPKRWGNSDAFIYEGPKESHRWCLDYILVRQHGRRLVRNITVHPKI--KSDHRLVSAPIRLLERNAPNRRLRPEEGHHGVPFDRKILTYDQRWRA 927
            + G +G   E IS RL+KVR+        TF+VGYAPTETA       +  K   W  L + + EV + DHL+++MD+NA TG R +G    D +++G YGR  +++NG RLL  AA+++LS++NT+F TPK  G          K   ++ LD+IL+RQ  RR VRN++V       +DH LV   +R   R APNRR R   G   +  D + L  D   RA
Sbjct:    4 SVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK--GGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVRNVSVKSVAFKDADHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRA 223          
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Match: A0A6H5JEE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE1_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.460e-35
Identity = 108/329 (32.83%), Postives = 157/329 (47.72%), Query Frame = 1
Query:  415 KSKLWKELCSTVAEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGTLSDNGSRLLACAAEHKLSIVNTFFSTPKRWGNSDAFIYEGPKESHRWCLDYIL--------VRQH---GRRLVRNITVHPKIKSDHRLVSAP-----IRLLERNAPNRRLRPEEGHHGVPFDRKILTYDQRWRATVAQE-----IEVKEGVGKLGNGKAVGIDNVCGELLKLGLSKNSAILKCFHNIVVAVWQQ--------------------------------------EVVPQEWKDAIITMLFKKGNPYECGNFRGILLGAHAGKVVLKVV 1224
            K   W  L + + EV + DHL+++MD+N  TG R +G    D +++G YGR  +++NG RLL  A++++LS+ NT+F TPK  G          K   ++ LD+IL        +RQ    G+ L+ +     ++  D   +         +LL   +PN              D       +RW   V  +     +EV+E V ++ N KAVG D++  EL+KL L  +  +L+ FH IVV VWQ                                         VPQ+WKDA I +LFKKG+  ECGN+RGI L AHAGKV+LKVV
Sbjct:    5 KDSFWTALNAAIREVHSRDHLVVLMDANVRTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK--GGVQHTFQSSNKGKEKYRLDFILXGTAPWTGIRQPIPPGQHLLSDTE---RVLRDTTFIRQRWARWFYKLLNTKSPN-------------IDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVXGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVV 313          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52190.12513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDU4_9PHAE1.620e-6133.20Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JQH5_9PHAE3.020e-5930.41Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KC90_9PHAE7.740e-5429.91Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KAA3_9PHAE6.570e-4433.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6H7_9PHAE3.250e-4138.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP87_9PHAE6.700e-4140.87Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JBD7_9PHAE3.910e-3937.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDS6_9PHAE7.380e-3939.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL25_9PHAE1.120e-3539.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEE1_9PHAE1.460e-3532.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52190contigH-elongata_contig52190:2179..3998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score104.8
Seed ortholog evalue1e-19
Seed eggNOG ortholog8479.XP_005287781.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BHR3@33208,3CUIP@33213,48DAM@7711,49HS5@7742,4CMNI@8459,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1224
Cds size1224
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.2321906-CDS-H-elongata_contig52190:2178..31231622930853.2321906-CDS-H-elongata_contig52190:2178..3123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52190 2179..3123 +
1691679598.4401662-CDS-H-elongata_contig52190:2178..31231691679598.4401662-CDS-H-elongata_contig52190:2178..3123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52190 2179..3123 +
1622930853.2470348-CDS-H-elongata_contig52190:3719..39981622930853.2470348-CDS-H-elongata_contig52190:3719..3998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52190 3720..3998 +
1691679598.45697-CDS-H-elongata_contig52190:3719..39981691679598.45697-CDS-H-elongata_contig52190:3719..3998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52190 3720..3998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52190.12513.1prot_H-elongata_contig52190.12513.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52190 2179..3998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52190.12513.1

>prot_H-elongata_contig52190.12513.1 ID=prot_H-elongata_contig52190.12513.1|Name=mRNA_H-elongata_contig52190.12513.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=408bp
AARSKELVVATWNVRTMSEIGTNGPGHGEDLLIFAAKYECDFIAIQETHR
DGRTTIQASAAGYVVHYSGHCYGDGGKPRILGVGLAVSESIARAFGPDGT
VPEHISARLLKVRVIFKHRAVTTFIVGYAPTETAAICHKSKLWKELCSTV
AEVPASDHLILMMDSNAHTGGRGEGGGLGDVRVLGPYGRGTLSDNGSRLL
ACAAEHKLSIVNTFFSTPKRWGNSDAFIYEGPKESHRWCLDYILVRQHGR
RLVRNITVHPKIKSDHRLVSAPIRLLERNAPNRRLRPEEGHHGVPFDRKI
LTYDQRWRATVAQEIEVKEGVGKLGNGKAVGIDNVCGELLKLGLSKNSAI
LKCFHNIVVAVWQQEVVPQEWKDAIITMLFKKGNPYECGNFRGILLGAHA
GKVVLKVV
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mRNA from alignment at H-elongata_contig52190:2179..3998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52190.12513.1 ID=mRNA_H-elongata_contig52190.12513.1|Name=mRNA_H-elongata_contig52190.12513.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1820bp|location=Sequence derived from alignment at H-elongata_contig52190:2179..3998+ (Himanthalia elongata Himel1 dioecious)
GCAGCACGTTCGAAGGAGCTGGTGGTTGCCACATGGAACGTCCGCACCAT GTCCGAGATAGGGACCAACGGCCCGGGGCACGGGGAGGATCTTTTGATAT TCGCTGCAAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCACCGC GATGGAAGGACAACCATACAAGCATCAGCCGCTGGTTATGTCGTGCACTA CAGCGGCCATTGCTATGGTGATGGAGGTAAGCCTAGGATACTCGGAGTTG GTCTGGCTGTCAGCGAGTCGATCGCTCGCGCATTCGGCCCAGATGGCACT GTGCCGGAACACATCAGTGCGCGGCTGCTGAAGGTGAGGGTGATTTTCAA ACACAGAGCCGTCACAACCTTCATCGTCGGATACGCTCCGACTGAAACAG CAGCCATCTGTCACAAGTCTAAGTTATGGAAGGAACTTTGCAGCACTGTT GCTGAGGTACCTGCCAGCGACCACCTGATTTTGATGATGGATTCTAACGC CCATACGGGAGGAAGGGGAGAGGGAGGTGGACTAGGGGATGTCCGGGTTT TGGGACCATACGGCAGAGGCACTCTCAGTGACAACGGGTCGCGACTTCTA GCATGTGCTGCGGAGCACAAGCTGTCGATTGTCAACACCTTTTTCAGCAC ACCGAAGCGTTGGGGAAACTCGGATGCGTTCATATACGAGGGGCCGAAGG AATCCCACCGCTGGTGCCTAGACTACATCCTGGTACGCCAGCATGGCCGC AGGCTCGTCCGGAACATCACTGTCCACCCGAAGATTAAATCAGACCACCG CTTGGTTTCAGCTCCCATCCGCCTCCTAGAACGGAACGCACCCAACCGCC GCCTGAGACCGGAAGAAGGGCACCACGGGGTACCCTTCGACCGGAAAATT CTGACGTATGATCAGCGCTGGAGGGCGACTGTAGCGCAGGAGATTGTCAC CAAGCTTCCTGACTCCACCTTCGCCGCTGATATCCCGGACGTCAACTCCA TGGCCTCTACGTTCGCCGACATCTTGCGCCAGATAGCCGTGGACACACTC CCTCTCCGCCCAAAGCGCCCCTCTACGAGAGACTTTAGCGAGTCTCTACA AGCCCAAGAACGCCTCCGACAGACGTGGGACGTCAGAAAACGCGTGTGGG AGAAATTACGTGCTCCCCCTAGGACCCAAGTCTAAGGAAGGCGTTGAAAA TGACAGACAAGGCGTTCAAACGGGCTAAGCACGCGGAGCTACAGAGCTTC CTGCGTGAGCACACCGCCTGGACCGCGGACCTCACCCGCCAGAGGGTCCA GGCAGGACTGTACCAGCACATGAAGTCACTGGAGCTTGAAGGGAAGATGG GATGTAAATCAACCTACATCAAGAACGCTTTTGGCGTGTTGTTGCGGGAC AAGCCGTTTATCCTACTTCGGTGGAAATAATGGTTCCAGGAGCGCCTGAA CGCGAAATCGTCGGCTCTCGACGCCTCTATCCTTGATGGCATCGATCATT TGCCCGAACACGTCCCGCTTGCGGCCGAGCCCACGTTGTAGGAAGTGAAG GAGGGAGTGGGGAAGCTGGGGAACGGCAAGGCTGTCGGCATCGACAATGT CTGCGGTGAACTGCTGAAGCTCGGTCTCTCCAAGAACTCCGCCATCCTGA AGTGTTTCCACAACATTGTTGTCGCCGTATGGCAGCAGGAAGTAGTGCCA CAGGAGTGGAAGGATGCTATCATCACAATGCTCTTCAAGAAGGGCAACCC GTACGAGTGTGGAAACTTCCGTGGCATATTGCTTGGGGCTCATGCAGGCA AGGTGGTTCTAAAAGTGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig52190:2179..3998+

>mRNA_H-elongata_contig52190.12513.1 ID=mRNA_H-elongata_contig52190.12513.1|Name=mRNA_H-elongata_contig52190.12513.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2448bp|location=Sequence derived from alignment at H-elongata_contig52190:2179..3998+ (Himanthalia elongata Himel1 dioecious)
GCAGCACGTTCGAAGGAGCTGGTGGTTGCCACATGGAACGTCCGCACCAT
GTCCGAGATAGGGACCAACGGCCCGGGGCACGGGGAGGATCTTTTGATAT
TCGCTGCAAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCACCGC
GATGGAAGGACAACCATACAAGCATCAGCCGCTGGTTATGTCGTGCACTA
CAGCGGCCATTGCTATGGTGATGGAGGTAAGCCTAGGATACTCGGAGTTG
GTCTGGCTGTCAGCGAGTCGATCGCTCGCGCATTCGGCCCAGATGGCACT
GTGCCGGAACACATCAGTGCGCGGCTGCTGAAGGTGAGGGTGATTTTCAA
ACACAGAGCCGTCACAACCTTCATCGTCGGATACGCTCCGACTGAAACAG
CAGCCATCTGTCACAAGTCTAAGTTATGGAAGGAACTTTGCAGCACTGTT
GCTGAGGTACCTGCCAGCGACCACCTGATTTTGATGATGGATTCTAACGC
CCATACGGGAGGAAGGGGAGAGGGAGGTGGACTAGGGGATGTCCGGGTTT
TGGGACCATACGGCAGAGGCACTCTCAGTGACAACGGGTCGCGACTTCTA
GCATGTGCTGCGGAGCACAAGCTGTCGATTGTCAACACCTTTTTCAGCAC
ACCGAAGCGTTGGGGAAACTCGGATGCGTTCATATACGAGGGGCCGAAGG
AATCCCACCGCTGGTGCCTAGACTACATCCTGGTACGCCAGCATGGCCGC
AGGCTCGTCCGGAACATCACTGTCCACCCGAAGATTAAATCAGACCACCG
CTTGGTTTCAGCTCCCATCCGCCTCCTAGAACGGAACGCACCCAACCGCC
GCCTGAGACCGGAAGAAGGGCACCACGGGGTACCCTTCGACCGGAAAATT
CTGACGTATGATCAGCGCTGGAGGGCGACTGTAGCGCAGGAGATTGCAGC
ACGTTCGAAGGAGCTGGTGGTTGCCACATGGAACGTCCGCACCATGTCCG
AGATAGGGACCAACGGCCCGGGGCACGGGGAGGATCTTTTGATATTCGCT
GCAAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCACCGCGATGG
AAGGACAACCATACAAGCATCAGCCGCTGGTTATGTCGTGCACTACAGCG
GCCATTGCTATGGTGATGGAGGTAAGCCTAGGATACTCGGAGTTGGTCTG
GCTGTCAGCGAGTCGATCGCTCGCGCATTCGGCCCAGATGGCACTGTGCC
GGAACACATCAGTGCGCGGCTGCTGAAGGTGAGGGTGATTTTCAAACACA
GAGCCGTCACAACCTTCATCGTCGGATACGCTCCGACTGAAACAGCAGCC
ATCTGTCACAAGTCTAAGTTATGGAAGGAACTTTGCAGCACTGTTGCTGA
GGTACCTGCCAGCGACCACCTGATTTTGATGATGGATTCTAACGCCCATA
CGGGAGGAAGGGGAGAGGGAGGTGGACTAGGGGATGTCCGGGTTTTGGGA
CCATACGGCAGAGGCACTCTCAGTGACAACGGGTCGCGACTTCTAGCATG
TGCTGCGGAGCACAAGCTGTCGATTGTCAACACCTTTTTCAGCACACCGA
AGCGTTGGGGAAACTCGGATGCGTTCATATACGAGGGGCCGAAGGAATCC
CACCGCTGGTGCCTAGACTACATCCTGGTACGCCAGCATGGCCGCAGGCT
CGTCCGGAACATCACTGTCCACCCGAAGATTAAATCAGACCACCGCTTGG
TTTCAGCTCCCATCCGCCTCCTAGAACGGAACGCACCCAACCGCCGCCTG
AGACCGGAAGAAGGGCACCACGGGGTACCCTTCGACCGGAAAATTCTGAC
GTATGATCAGCGCTGGAGGGCGACTGTAGCGCAGGAGATTGAAGTGAAGG
AGGGAGTGGGGAAGCTGGGGAACGGCAAGGCTGTCGGCATCGACAATGTC
TGCGGTGAACTGCTGAAGCTCGGTCTCTCCAAGAACTCCGCCATCCTGAA
GTGTTTCCACAACATTGTTGTCGCCGTATGGCAGCAGGAAGTAGTGCCAC
AGGAGTGGAAGGATGCTATCATCACAATGCTCTTCAAGAAGGGCAACCCG
TACGAGTGTGGAAACTTCCGTGGCATATTGCTTGGGGCTCATGCAGGCAA
GGTGGTTCTAAAAGTGGTCGAAGTGAAGGAGGGAGTGGGGAAGCTGGGGA
ACGGCAAGGCTGTCGGCATCGACAATGTCTGCGGTGAACTGCTGAAGCTC
GGTCTCTCCAAGAACTCCGCCATCCTGAAGTGTTTCCACAACATTGTTGT
CGCCGTATGGCAGCAGGAAGTAGTGCCACAGGAGTGGAAGGATGCTATCA
TCACAATGCTCTTCAAGAAGGGCAACCCGTACGAGTGTGGAAACTTCCGT
GGCATATTGCTTGGGGCTCATGCAGGCAAGGTGGTTCTAAAAGTGGTC
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