mRNA_H-elongata_contig52155.12505.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52155.12505.1
Unique NamemRNA_H-elongata_contig52155.12505.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52155.12505.1 vs. uniprot
Match: D8LCW3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW3_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 8.260e-21
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 VSGSETSEDEARAGWVSLWGLGQGHYCGYLLKKSKRDPSLWRRRWCIL 144
            VSGS+TSEDE RAGW+ L GLGQGHYCGYL KKS+ DP+LWRRRWCIL
Sbjct:  468 VSGSDTSEDERRAGWIDLRGLGQGHYCGYLQKKSRSDPNLWRRRWCIL 515
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BLAST of mRNA_H-elongata_contig52155.12505.1 vs. uniprot
Match: A0A6H5KG66_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG66_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 8.260e-21
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 VSGSETSEDEARAGWVSLWGLGQGHYCGYLLKKSKRDPSLWRRRWCIL 144
            VSGS+TSEDE RAGW+ L GLGQGHYCGYL KKS+ DP+LWRRRWCIL
Sbjct:  420 VSGSDTSEDERRAGWIDLRGLGQGHYCGYLQKKSRSDPNLWRRRWCIL 467
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BLAST of mRNA_H-elongata_contig52155.12505.1 vs. uniprot
Match: A0A4D9CU19_9STRA (PH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU19_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.570e-7
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 VSGSETSEDEAR-----AGWVS-LWGLGQGHYCGYLLKKSKRDPSLWRRRWCIL 144
            +SG E S+DE       A W S   G+ +    GYLLK+S RDP LWRRRWC+L
Sbjct:  101 LSGPEASDDETSPSCPAASWFSDQAGISKPGLSGYLLKRSSRDPCLWRRRWCVL 154
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BLAST of mRNA_H-elongata_contig52155.12505.1 vs. uniprot
Match: A0A7R9U7P1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7P1_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.360e-6
Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:    1 VSGSETSEDEARAGWVSLWGLG------QGHYCGYLLKKSKRDPSLWRRRWCIL 144
             SG ++S+DE    W  L  L        G   G+LLK+S RDP++WRRRWC+L
Sbjct:  143 ASGIDSSDDERGFAWRDLSHLTTSSSDRDGICSGFLLKRSSRDPNVWRRRWCVL 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52155.12505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCW3_ECTSI8.260e-2181.25PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KG66_9PHAE8.260e-2181.25PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A4D9CU19_9STRA5.570e-750.00PH domain-containing protein n=2 Tax=Monodopsidace... [more]
A0A7R9U7P1_9STRA9.360e-644.44Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52155contigH-elongata_contig52155:105..248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue3.5e-17
Seed eggNOG ortholog2880.D8LCW3
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs28P6I@1,2QVTE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.577537-CDS-H-elongata_contig52155:104..2481622930852.577537-CDS-H-elongata_contig52155:104..248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52155 105..248 +
1691679598.1602826-CDS-H-elongata_contig52155:104..2481691679598.1602826-CDS-H-elongata_contig52155:104..248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52155 105..248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52155.12505.1prot_H-elongata_contig52155.12505.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52155 105..248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52155.12505.1

>prot_H-elongata_contig52155.12505.1 ID=prot_H-elongata_contig52155.12505.1|Name=mRNA_H-elongata_contig52155.12505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
VSGSETSEDEARAGWVSLWGLGQGHYCGYLLKKSKRDPSLWRRRWCIL
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mRNA from alignment at H-elongata_contig52155:105..248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52155.12505.1 ID=mRNA_H-elongata_contig52155.12505.1|Name=mRNA_H-elongata_contig52155.12505.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig52155:105..248+ (Himanthalia elongata Himel1 dioecious)
GTTTCGGGATCGGAAACGTCGGAGGACGAAGCTAGAGCGGGCTGGGTGAG
CCTGTGGGGACTGGGGCAGGGACACTATTGTGGATACCTGCTAAAAAAGA
GCAAGAGGGACCCCAGCCTCTGGCGTAGACGCTGGTGCATCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig52155:105..248+

>mRNA_H-elongata_contig52155.12505.1 ID=mRNA_H-elongata_contig52155.12505.1|Name=mRNA_H-elongata_contig52155.12505.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig52155:105..248+ (Himanthalia elongata Himel1 dioecious)
GTTTCGGGATCGGAAACGTCGGAGGACGAAGCTAGAGCGGGCTGGGTGAG
CCTGTGGGGACTGGGGCAGGGACACTATTGTGGATACCTGCTAAAAAAGA
GCAAGAGGGACCCCAGCCTCTGGCGTAGACGCTGGTGCATCCTCGTTTCG
GGATCGGAAACGTCGGAGGACGAAGCTAGAGCGGGCTGGGTGAGCCTGTG
GGGACTGGGGCAGGGACACTATTGTGGATACCTGCTAAAAAAGAGCAAGA
GGGACCCCAGCCTCTGGCGTAGACGCTGGTGCATCCTC
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