mRNA_H-elongata_contig52132.12502.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52132.12502.1
Unique NamemRNA_H-elongata_contig52132.12502.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Match: A0A6H5KP96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP96_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 1.120e-83
Identity = 144/197 (73.10%), Postives = 156/197 (79.19%), Query Frame = 1 
Query:    1 GGVKWAVTELLDVSDFDSLVPRPAHRFPFTLDGFQKQAVARLEFNSDVIVIXXXXXXXXXXXXXXXXXXXXIKLWCSSYTFFPSRTALLVPFSLFYSRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYVNDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPV 591
            GGVKWAVTELLDVSDFD+LVPRPAHRFPFTLDGFQKQAVARLE  ++ + +                      +  + YT  P +      +  F +RFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWV+FDEVHYVNDSERGVVWEEVIIMLP+HANMIFLSATTPNTVEFCDWIGRTKRKPV
Sbjct:  408 GGVKWAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLE-RAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTS-PIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPV 602
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BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Match: D7FJL2_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL2_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 1.250e-81
Identity = 142/195 (72.82%), Postives = 154/195 (78.97%), Query Frame = 1 
Query:    7 VKWAVTELLDVSDFDSLVPRPAHRFPFTLDGFQKQAVARLEFNSDVIVIXXXXXXXXXXXXXXXXXXXXIKLWCSSYTFFPSRTALLVPFSLFYSRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYVNDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPV 591
            VKWAVTELLDVSDFD+LVPRPAHRFPFTLDGFQKQAVARLE  ++ + +                      +  + YT  P +      +  F +RFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWV+FDEVHYVNDSERGVVWEEVIIMLP+HANMIFLSATTPNTVEFCDWIGRTKRKPV
Sbjct:  565 VKWAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLE-RAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTS-PIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPV 757
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BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Match: A0A835YZN6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN6_9STRA)

HSP 1 Score: 235 bits (599), Expect = 3.540e-75
Identity = 124/194 (63.92%), Postives = 140/194 (72.16%), Query Frame = 1 
Query:   13 WAVTELLDVSDFDSLVPRPAHRFPFTLDGFQKQAVARLEFNSDVIVIXXXXXXXXXXXXXXXXXXXXIKLWCSSYTFFPSRTALLVPFSLFYSRFGD-VGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYVNDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPV 591
            WAVT  LDVSDF SLVP PA  +PF LD FQKQAVARLE   + + +                      +  + YT  P +      +  F  RFGD VGLITGDVSINPEASCLIMTTEILRSMLYRGAD++RDIEWV+FDEVHY+ND+ERGVVWEEVIIMLP+HA MIFLSATTPNT+EF DWIGRTK+KPV
Sbjct:   16 WAVTASLDVSDFRSLVPNPAIEYPFELDAFQKQAVARLE-RRECVFVAAHTSAGKTVVAEYAIALAAAHMTRAIYTS-PIKALSNQKYRDFKKRFGDDVGLITGDVSINPEASCLIMTTEILRSMLYRGADIVRDIEWVIFDEVHYINDTERGVVWEEVIIMLPEHAGMIFLSATTPNTIEFSDWIGRTKKKPV 207
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BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Match: A0A7S1XU58_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU58_9STRA)

HSP 1 Score: 235 bits (599), Expect = 1.120e-74
Identity = 124/195 (63.59%), Postives = 138/195 (70.77%), Query Frame = 1 
Query:   13 WAVTELLDVSDFDSLVPRPAHRFPFTLDGFQKQAVARLEFNSDVIVIXXXXXXXXXXXXXXXXXXXXIKLWCSSYTFFPSRTALLVPFSLFYSRFG--DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYVNDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPV 591
            WAVT LLDVSDF+ LVPRPA  +PF LDGFQKQAV RLE   DV V                         C  YT  P +      F  F  RFG  +VG++TGDVS+NPEA C+IMTTEILRSMLYRGADL+RD+EWVVFDEVHYVNDSERGVVWEEVIIMLP +  M+FLSATTPNT EFC+WIGRTKR+PV
Sbjct:   14 WAVTALLDVSDFERLVPRPAAEWPFELDGFQKQAVCRLEQKEDVFVAAHTSAGKTVVAEYAVALALRNGTRCV-YTS-PIKALSNQKFRDFKERFGAENVGIVTGDVSVNPEAPCVIMTTEILRSMLYRGADLVRDLEWVVFDEVHYVNDSERGVVWEEVIIMLPSYVGMVFLSATTPNTTEFCEWIGRTKRRPV 206
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BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Match: A0A7R9U769_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U769_9STRA)

HSP 1 Score: 228 bits (581), Expect = 1.550e-65
Identity = 115/194 (59.28%), Postives = 139/194 (71.65%), Query Frame = 1 
Query:   13 WAVTELLDVSDFDSLVPRPAHRFPFTLDGFQKQAVARLEFNSDVIVIXXXXXXXXXXXXXXXXXXXXIKLWCSSYTFFPSRTALLVPFSLFYSRFGD-VGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYVNDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPV 591
            WAVT+LL ++DF  ++P PA  +PF LDGFQKQAV RLE   DV V                         C  YT  P +      +  F +R+GD VG++TGDVS+NP+ASC++MTTEILRSMLYRGADL+RD+EWV+FDEVHYVNDSERGVVWEEVIIMLP +  M+FLSATTPNT+EFC+WIGRTKR+PV
Sbjct:  333 WAVTQLLRITDFRRMIPHPAIEYPFELDGFQKQAVCRLEQKEDVFVAAHTSAGKTVVAEYAIALAMRNGTRCV-YTS-PIKALSNQKYRDFRTRYGDDVGIVTGDVSVNPDASCVVMTTEILRSMLYRGADLVRDLEWVIFDEVHYVNDSERGVVWEEVIIMLPAYVGMVFLSATTPNTIEFCEWIGRTKRRPV 524
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BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Match: A0A5A8CCV7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CCV7_CAFRO)

HSP 1 Score: 214 bits (545), Expect = 1.170e-60
Identity = 110/195 (56.41%), Postives = 132/195 (67.69%), Query Frame = 1 
Query:   13 WAVTELLDVSDFDSLVPR--PAHRFPFTLDGFQKQAVARLEFNSDVIVIXXXXXXXXXXXXXXXXXXXXIKLWCSSYTFFPSRTALLVPFSLFYSRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYVNDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPV 591
            WAVT  +   + D+   R  PA  FPFTLD FQ++AVA ++    V V                         C  YT  P +      +  F  RFGDVGL+TGD+S++PEASCL+MTTEILRSMLYRG+D++RDIEWV+FDEVHYVNDSERGVVWEE II+LPDH  M+FLSATTPNTVEFC+WIGRTKR+PV
Sbjct:  195 WAVTRRMTAEELDAAEARRTPALEFPFTLDTFQREAVAHVDEGESVFVAAHTSAGKTVVAEYAIAQCARNCTRCI-YTS-PIKALSNQKYRDFKDRFGDVGLVTGDISVDPEASCLVMTTEILRSMLYRGSDVVRDIEWVIFDEVHYVNDSERGVVWEETIILLPDHVGMVFLSATTPNTVEFCEWIGRTKRRPV 387
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BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Match: A0A5A8EJT6_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EJT6_CAFRO)

HSP 1 Score: 214 bits (545), Expect = 1.200e-60
Identity = 110/195 (56.41%), Postives = 132/195 (67.69%), Query Frame = 1 
Query:   13 WAVTELLDVSDFDSLVPR--PAHRFPFTLDGFQKQAVARLEFNSDVIVIXXXXXXXXXXXXXXXXXXXXIKLWCSSYTFFPSRTALLVPFSLFYSRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYVNDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPV 591
            WAVT  +   + D+   R  PA  FPFTLD FQ++AVA ++    V V                         C  YT  P +      +  F  RFGDVGL+TGD+S++PEASCL+MTTEILRSMLYRG+D++RDIEWV+FDEVHYVNDSERGVVWEE II+LPDH  M+FLSATTPNTVEFC+WIGRTKR+PV
Sbjct:  680 WAVTRRMTAEELDAAEARRTPALEFPFTLDTFQREAVAHVDEGESVFVAAHTSAGKTVVAEYAIAQCARNCTRCI-YTS-PIKALSNQKYRDFKDRFGDVGLVTGDISVDPEASCLVMTTEILRSMLYRGSDVVRDIEWVIFDEVHYVNDSERGVVWEETIILLPDHVGMVFLSATTPNTVEFCEWIGRTKRRPV 872
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BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Match: A0A2P6N2L6_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N2L6_9EUKA)

HSP 1 Score: 213 bits (543), Expect = 2.130e-60
Identity = 112/197 (56.85%), Postives = 131/197 (66.50%), Query Frame = 1 
Query:    1 GGVKWAVTELLDVSDFDSLVPRPAHRFPFTLDGFQKQAVARLEFNSDVIVIXXXXXXXXXXXXXXXXXXXXIKLWCSSYTFFPSRTALLVPFSLFYSRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYVNDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPV 591
            G  +WA+ E +DVSDF  LVP  A  +PF LDGFQK+AV  LE   + + I                      +  + YT  P +      F  F S FGDVGLITGDV I PEASCLI+TTEILRSMLYRGAD+IRD+EWV+FDEVHYVND +RGVVWEEVIIMLP H N+I LSAT PNT EF DW+GRTK+K +
Sbjct:  386 GREEWAIMEPIDVSDFQELVPEMAIDYPFDLDGFQKEAVIHLE-RGESVFIGAHTSAGKTVVAEYAIALAAKHMTRAIYTS-PIKALSNQKFRDFKSTFGDVGLITGDVQIKPEASCLILTTEILRSMLYRGADIIRDVEWVIFDEVHYVNDMDRGVVWEEVIIMLPAHVNIILLSATVPNTYEFADWVGRTKKKKI 580
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BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Match: A0A1V9ZLM2_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLM2_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.130e-60
Identity = 113/197 (57.36%), Postives = 138/197 (70.05%), Query Frame = 1 
Query:    7 VKWAVTELLDVSDFDSLVPRPAHRFPFTLDGFQKQAVARLEFNSDVIVIXXXXXXXXXXXXXXXXXXXXIKLWCSSYTFFPSRTALLVPFSLFYSRFG--DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYVNDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPV 591
            ++WA  E +DVS+F + VP  A +FPF LD FQKQAV  LE N D + I                      +  + YT  P +      +  F ++FG  +VGLITGDVSINP+ASCL+MTTEILRSMLYRGAD+IRDIEWV+FDE+HY+NDSERGVVWEEVIIMLP+H +M+FLSATTPNT EF DWIGRTK+K +
Sbjct:  370 LEWASAEPVDVSNFHAKVPDMAMQFPFELDSFQKQAVVHLE-NHDCVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTS-PIKALSNQKYRDFRTKFGVDNVGLITGDVSINPQASCLVMTTEILRSMLYRGADVIRDIEWVIFDEIHYLNDSERGVVWEEVIIMLPEHVSMVFLSATTPNTFEFSDWIGRTKQKKI 564
[Close]
BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Match: L8H4E3_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H4E3_ACACA)

HSP 1 Score: 212 bits (539), Expect = 7.390e-60
Identity = 110/194 (56.70%), Postives = 132/194 (68.04%), Query Frame = 1 
Query:   10 KWAVTELLDVSDFDSLVPRPAHRFPFTLDGFQKQAVARLEFNSDVIVIXXXXXXXXXXXXXXXXXXXXIKLWCSSYTFFPSRTALLVPFSLFYSRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYVNDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPV 591
            +WA+ +  DVS+F+ +VP  A  +PF LD FQK+AV  LE N + + +                      +  + YT  P +      +  F   FGDVGLITGDVSI PEASCLI+TTEILRSMLYRGADLIRD+EWV+FDEVHYVND ERGVVWEEVIIMLPDH N+I LSAT PNT+EF DWIGRTK+K +
Sbjct:  375 EWAIMDNSDVSNFEEIVPEMALEYPFDLDVFQKRAVCHLE-NGESVFVAAHTSAGKTVVAEYAIALASKHMTRTIYTS-PIKALSNQKYRDFKETFGDVGLITGDVSIKPEASCLILTTEILRSMLYRGADLIRDVEWVIFDEVHYVNDIERGVVWEEVIIMLPDHVNLILLSATVPNTLEFADWIGRTKKKNI 566
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52132.12502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP96_9PHAE1.120e-8373.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJL2_ECTSI1.250e-8172.82DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YZN6_9STRA3.540e-7563.92P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1XU58_9STRA1.120e-7463.59Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9U769_9STRA1.550e-6559.28Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A5A8CCV7_CAFRO1.170e-6056.41Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8EJT6_CAFRO1.200e-6056.41Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A2P6N2L6_9EUKA2.130e-6056.85Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A1V9ZLM2_9STRA2.130e-6057.36DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna... [more]
L8H4E3_ACACA7.390e-6056.70Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52132contigH-elongata_contig52132:1675..3254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.6
Seed ortholog evalue9.6e-72
Seed eggNOG ortholog2880.D7FJL2
Preferred nameSKIV2L
KEGG koko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015672,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019439,GO:0023052,GO:0030001,GO:0030968,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034427,GO:0034620,GO:0034641,GO:0034655,GO:0034976,GO:0035864,GO:0035966,GO:0035967,GO:0040029,GO:0042221,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070478,GO:0070481,GO:0070887,GO:0071310,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
EggNOG OGsCOG4581@1,KOG0947@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons5
Model size615
Cds size615
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52132.12502.1prot_H-elongata_contig52132.12502.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52132 1675..3254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.3302577-CDS-H-elongata_contig52132:1674..18031622930852.3302577-CDS-H-elongata_contig52132:1674..1803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52132 1675..1803 +
1691679598.0578117-CDS-H-elongata_contig52132:1674..18031691679598.0578117-CDS-H-elongata_contig52132:1674..1803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52132 1675..1803 +
1622930852.3462627-CDS-H-elongata_contig52132:2271..23701622930852.3462627-CDS-H-elongata_contig52132:2271..2370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52132 2272..2370 +
1691679598.0704463-CDS-H-elongata_contig52132:2271..23701691679598.0704463-CDS-H-elongata_contig52132:2271..2370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52132 2272..2370 +
1622930852.3578832-CDS-H-elongata_contig52132:2388..24481622930852.3578832-CDS-H-elongata_contig52132:2388..2448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52132 2389..2448 +
1691679598.0786805-CDS-H-elongata_contig52132:2388..24481691679598.0786805-CDS-H-elongata_contig52132:2388..2448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52132 2389..2448 +
1622930852.3728352-CDS-H-elongata_contig52132:2479..26291622930852.3728352-CDS-H-elongata_contig52132:2479..2629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52132 2480..2629 +
1691679598.0867386-CDS-H-elongata_contig52132:2479..26291691679598.0867386-CDS-H-elongata_contig52132:2479..2629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52132 2480..2629 +
1622930852.3884494-CDS-H-elongata_contig52132:3077..32541622930852.3884494-CDS-H-elongata_contig52132:3077..3254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52132 3078..3254 +
1691679598.0941956-CDS-H-elongata_contig52132:3077..32541691679598.0941956-CDS-H-elongata_contig52132:3077..3254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52132 3078..3254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52132.12502.1

>prot_H-elongata_contig52132.12502.1 ID=prot_H-elongata_contig52132.12502.1|Name=mRNA_H-elongata_contig52132.12502.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
GGVKWAVTELLDVSDFDSLVPRPAHRFPFTLDGFQKQAVARLEFNSDVIV
IVIYIVIGKPIMVMVMVMFVFIKLWCSSYTFFPSRTALLVPFSLFYSRFG
DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVVFDEVHYV
NDSERGVVWEEVIIMLPDHANMIFLSATTPNTVEFCDWIGRTKRKPVRQD
YVLA*
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mRNA from alignment at H-elongata_contig52132:1675..3254+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52132.12502.1 ID=mRNA_H-elongata_contig52132.12502.1|Name=mRNA_H-elongata_contig52132.12502.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1580bp|location=Sequence derived from alignment at H-elongata_contig52132:1675..3254+ (Himanthalia elongata Himel1 dioecious)
GGTGGCGTGAAGTGGGCGGTTACGGAGCTCTTGGACGTGTCGGATTTCGA
TTCGCTCGTGCCGCGACCGGCGCACCGTTTTCCTTTCACCCTTGACGGCT
TCCAAAAGCAGGCGGTCGCCAGATTGGAGGTCAGAGGGCGCTAAGGCAAT
CTTGCGCATGAAACATAATAATGAAACATAATGATGAAGCATTATAATGA
AACATAATGATGAAACATAACAATGACACATAATAATGAAGCATTATAAT
GAAACATAATAATGAAACATAATAATGACACATAATAATGAAACATAACA
ATGACACATAATAATGAAACATAACAATGACACATAATAATGAAACATAA
TAATGAAACATAATAATGACACATAACAATGAAACATAATAATGAATCAT
AACAATGAAACATAATAATGACACATAATAATGAATCATAATAATGAAAC
ATAATAATGACACATAATAATGAAGTATAATAATGAAACATAATAATGAA
TACTGAATATTGAATATTGAATCTTTCGCACGGAATGGTGGGTGTGCATC
GTGTACGACATTCATCGTGTACGGCATCCATCATTCACAACCCCCAGTTT
AACTCTGATGTCATCGTTATCGTTATATATATAGTTATTGGTAAACCTAT
TATGGTTATGGTGATGGTCATGTTCGTGTTTATCAAGTTATGGTGCGTAA
CCTGTTTTATTTAGTCTTCGTATACTTTTTTTCCTTCGAGGACCGCCCTT
CTCGTGCCCTTTTCTCTGTTTTATGTTTTCTATTTTCGACCAATGACGAC
GTCAGAGTCGATTCGGAGACGTTGGCCTCATCACGGGAGACGTATCCATC
AATCCGGAGGCCTCTTGCCTCATCATGACCACCGAGATTCTTAGATCCAT
GCTCTACAGGGGGGCCGATCTTATTCGGGACATCGAGTGGGTCGTTTTTG
ATGAGGTGGGCTGTAATATAGTGTCTAGATTAACATGATGTCTGGGGTAG
CATAATGAAACTAATATACACCTTTTGCTCATGATATCTCTCATACTGTA
ATATATTCTGCATCCTAAAGAAAAGTGGTGCACGGGAGGGAGTCATCGCT
ACCGTAGTATGCCCATGCTTTGAAGAGCTATCGGATGGGTACTTGTGGTG
ACCTCGGGACATCAATCTGTGCTTTACTATCGCTATCACTCTCGTTATCG
TTATCGTTATCGTTATCGTGAGCCACCGCGGAGGTGTAAATATGATTTCG
ACCTAGCTGCGCTGCGCCCCCACCCTGTACGATGTTGAATCGCGCACCAT
ACACCATGAATAATTTTGCTCTGTTTTGTCTCTTGGATAGATAAATCATG
ATTTTTTATACGGTATGGATTATGGATGGATTATGGATGGGAACGGTCGG
CAGGTGCACTACGTGAACGACTCTGAGAGGGGTGTGGTGTGGGAAGAGGT
TATCATCATGCTCCCGGACCACGCCAATATGATATTCCTCTCGGCCACCA
CACCCAACACGGTGGAGTTCTGCGACTGGATCGGCCGTACCAAGAGAAAG
CCGGTAAGGCAAGACTACGTCCTCGCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig52132:1675..3254+

>mRNA_H-elongata_contig52132.12502.1 ID=mRNA_H-elongata_contig52132.12502.1|Name=mRNA_H-elongata_contig52132.12502.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig52132:1675..3254+ (Himanthalia elongata Himel1 dioecious)
GGTGGCGTGAAGTGGGCGGTTACGGAGCTCTTGGACGTGTCGGATTTCGA
TTCGCTCGTGCCGCGACCGGCGCACCGTTTTCCTTTCACCCTTGACGGCT
TCCAAAAGCAGGCGGTCGCCAGATTGGAGGGTGGCGTGAAGTGGGCGGTT
ACGGAGCTCTTGGACGTGTCGGATTTCGATTCGCTCGTGCCGCGACCGGC
GCACCGTTTTCCTTTCACCCTTGACGGCTTCCAAAAGCAGGCGGTCGCCA
GATTGGAGTTTAACTCTGATGTCATCGTTATCGTTATATATATAGTTATT
GGTAAACCTATTATGGTTATGGTGATGGTCATGTTCGTGTTTATCAAGTT
ATGGTGCTTTAACTCTGATGTCATCGTTATCGTTATATATATAGTTATTG
GTAAACCTATTATGGTTATGGTGATGGTCATGTTCGTGTTTATCAAGTTA
TGGTGCTCTTCGTATACTTTTTTTCCTTCGAGGACCGCCCTTCTCGTGCC
CTTTTCTCTGTTTTATTCTTCGTATACTTTTTTTCCTTCGAGGACCGCCC
TTCTCGTGCCCTTTTCTCTGTTTTATAGTCGATTCGGAGACGTTGGCCTC
ATCACGGGAGACGTATCCATCAATCCGGAGGCCTCTTGCCTCATCATGAC
CACCGAGATTCTTAGATCCATGCTCTACAGGGGGGCCGATCTTATTCGGG
ACATCGAGTGGGTCGTTTTTGATGAGAGTCGATTCGGAGACGTTGGCCTC
ATCACGGGAGACGTATCCATCAATCCGGAGGCCTCTTGCCTCATCATGAC
CACCGAGATTCTTAGATCCATGCTCTACAGGGGGGCCGATCTTATTCGGG
ACATCGAGTGGGTCGTTTTTGATGAGGTGCACTACGTGAACGACTCTGAG
AGGGGTGTGGTGTGGGAAGAGGTTATCATCATGCTCCCGGACCACGCCAA
TATGATATTCCTCTCGGCCACCACACCCAACACGGTGGAGTTCTGCGACT
GGATCGGCCGTACCAAGAGAAAGCCGGTAAGGCAAGACTACGTCCTCGCG
TAGGTGCACTACGTGAACGACTCTGAGAGGGGTGTGGTGTGGGAAGAGGT
TATCATCATGCTCCCGGACCACGCCAATATGATATTCCTCTCGGCCACCA
CACCCAACACGGTGGAGTTCTGCGACTGGATCGGCCGTACCAAGAGAAAG
CCGGTAAGGCAAGACTACGTCCTCGCGTAG
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