prot_H-elongata_contig52077.12494.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52077.12494.1
Unique Nameprot_H-elongata_contig52077.12494.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length429
Homology
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BLAST of mRNA_H-elongata_contig52077.12494.1 vs. uniprot
Match: D7FIL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIL3_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 6.320e-57
Identity = 184/436 (42.20%), Postives = 221/436 (50.69%), Query Frame = 0 
Query:   22 DRALEHFRQASERGISLDLPLCESLATALFIKGLQGESTEMAAWNVLDYIRQRGMEHRPEVFDHVLIYATVCGDLSFALRVCQYADEEGICCDADVRNALCRSVDLAIKNLPDTAAVT-----------------------SDGGAAGGWKVEGTNATVEELWTLDALLQRWLDTEMEEIDAEFLEEEXXXXXXXXXXXXXXXDGLNVDGKKVNTGCNS--------SFQINSPRGELGGXXXXXXFSFSWGSVCFGVPFFGRGGPSADAGXXXXGGRGXXXXXXXXXDLDYGADRFASVVDYDHGGVPPNTDGVEGDAADGGESSLRDRGRKTAEAPATSPFGGEEFCGDLLDQNSALHPDHDIISFGAQDHFGAYIPGLGRGRRRG----EGDKSWR-------SVYADIVMPYGDPHGEGEQGIMSIPVKISV 415
            DRAL HFRQASERGI L LP+CE LA ALF+KGL+GE+TEM AWNVL+Y+RQR M  RP V++ VL+ A   GDLSFALRVCQ+ D+EG+  D  V++ L R+V+  +K LP  AAV+                       + GG  G WKVEGTNAT+ EL  LDALLQ WL+ EM E D       XXXXXXX          + V+G     G           + + +S   +  G           G +   V  F          XXXX    XXXXXXXXX     + R  S        +         D  D G+ S       TA       FGGE++CGDL DQ S   P       G   HF    P   RGRRRG      ++S R       SVYAD+VMPYG PHGEG QGI+SIPVK SV
Sbjct:  180 DRALLHFRQASERGICLPLPVCEDLALALFVKGLRGEATEMEAWNVLEYVRQRDMVPRPAVYEAVLLCALGSGDLSFALRVCQHVDDEGLVLDPHVQDTLFRTVEYVMKELPGAAAVSVSAAPPPVDGGAVAAGVRGDAAANGGGGEGEWKVEGTNATMGELRALDALLQSWLEAEMGEFDDVXXXXXXXXXXXXEEIQEFD---ITVEGSDEGDGAADLDXXXXADAAEWDSDVVDYDGGDLSTMSVHDVGHIAEDVVDF----HDXXXXXXXXXXXXXXXXXXXXXXXXXASARGPSSTSQSSSRIAWTGQHPGRDTDDYGDPSRPQSSLSTA-----PDFGGEKYCGDLTDQVSEFIP---FKGEGEDYHF----PDA-RGRRRGGVRSRQERSERHRSLDRQSVYADLVMPYGGPHGEGGQGIVSIPVKFSV 595
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52077.12494.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIL3_ECTSI6.320e-5742.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 173..195
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..169
e-value: 6.1E-9
score: 37.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52077contigH-elongata_contig52077:1587..3669 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52077.12494.1mRNA_H-elongata_contig52077.12494.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52077 1587..3669 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52077.12494.1 ID=prot_H-elongata_contig52077.12494.1|Name=mRNA_H-elongata_contig52077.12494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=429bp
MVPPQASFLYVMCGCLRHGDADRALEHFRQASERGISLDLPLCESLATAL
FIKGLQGESTEMAAWNVLDYIRQRGMEHRPEVFDHVLIYATVCGDLSFAL
RVCQYADEEGICCDADVRNALCRSVDLAIKNLPDTAAVTSDGGAAGGWKV
EGTNATVEELWTLDALLQRWLDTEMEEIDAEFLEEEEENDEEEEDEDGDA
DDGLNVDGKKVNTGCNSSFQINSPRGELGGGGGGFFFSFSWGSVCFGVPF
FGRGGPSADAGXXXXGGRGGGGGGGGGGDLDYGADRFASVVDYDHGGVPP
NTDGVEGDAADGGESSLRDRGRKTAEAPATSPFGGEEFCGDLLDQNSALH
PDHDIISFGAQDHFGAYIPGLGRGRRRGEGDKSWRSVYADIVMPYGDPHG
EGEQGIMSIPVKISVGHEDEKNDDDDDDD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf