mRNA_H-elongata_contig51629.12435.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51629.12435.1
Unique NamemRNA_H-elongata_contig51629.12435.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Match: D8LB20_ECTSI (Calcium-dependent cytoplasmic cysteine proteinase, papain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB20_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 9.860e-61
Identity = 97/122 (79.51%), Postives = 110/122 (90.16%), Query Frame = 1
Query:    1 GVKAEDVMQGAVGDCWLVAAMATLAGSMPGSIRKLFGNSQRSLRCVRVGKYKVRLFDVSRDQWTTIIVDDIIPTRNGKPLFAKPNGKELWVVLLEKAIAKHCGSYSAIAGGYEAWGLKVLTG 366
            GVKAEDV QGA+GDCWLVAAMATLAG+MPG+I+KLFGNS+RS R    GKYKVRLFD+++D+W TI VDD IPTR+G P+FAKPNGKELWVVLLEKA+AK CGSYS IAGG+EAWGLKVLTG
Sbjct:  112 GVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYR----GKYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAKFCGSYSNIAGGFEAWGLKVLTG 229          
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Match: A0A6H5L4V1_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V1_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 3.520e-36
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 1
Query:  136 VRVGKYKVRLFDVSRDQWTTIIVDDIIPTRNGKPLFAKPNGKELWVVLLEKAIAKHCGSYSAIAGGYEAWGLKVLTG 366
            +RVGKYKVRLFD+++++W TI VDD IPTR+G P+FAKPNGKELWVVLLEKA+AK CGSYS IAGG+EAWGLKVLTG
Sbjct:   14 LRVGKYKVRLFDITQERWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAKFCGSYSNIAGGFEAWGLKVLTG 90          
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Match: A0A6U5W761_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U5W761_GUITH)

HSP 1 Score: 127 bits (318), Expect = 1.710e-32
Identity = 56/118 (47.46%), Postives = 85/118 (72.03%), Query Frame = 1
Query:   13 EDVMQGAVGDCWLVAAMATLAGSMPGSIRKLFGNSQRSLRCVRVGKYKVRLFDVSRDQWTTIIVDDIIPTRNGKPLFAKPNGKELWVVLLEKAIAKHCGSYSAIAGGYEAWGLKVLTG 366
            ED+ QG +GDCWL+AA+A L+    G+I + F   + S+R    G YK++L+D  R++W  +I+DD +PT +G+P+FA+PNG+E+WV+LLEKA AK CG Y ++AGG+  W  + +TG
Sbjct:   81 EDIAQGQLGDCWLLAALACLS-ERAGAIERCFETREISVR----GLYKLKLYDGQREEWVRMIIDDYLPTEHGQPIFAQPNGREIWVLLLEKAFAKFCGDYQSLAGGHILWAFQAMTG 193          
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Match: R1DIU9_EMIHU (Calpain catalytic domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DIU9_EMIHU)

HSP 1 Score: 121 bits (304), Expect = 1.200e-31
Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 GVKAEDVMQGAVGDCWLVAAMATLAGSMPGSIRKLFGNSQRSLRCVRVGKYKVRLFDVSRDQWTTIIVDDIIP--TRNGKPLFAKPNGKELWVVLLEKAIAKHCGSYSAIAGGYEAWGLKVLTG 366
            G++  D+ QGA+GDCWL+AA A LA   PG ++ LF  +  S R    GKY +RL+DV    W  + VDD  P  +RNG+PLFA+P   ELWV+LLEKA AK+CGSY  + GG   W L V+TG
Sbjct:  124 GIQPADIAQGALGDCWLLAAAACLA-EFPGVLQNLFEQTHVSPR----GKYALRLWDVVGQAWMRVCVDDFFPCDSRNGQPLFAQPADGELWVLLLEKAFAKYCGSYGELQGGLTLWALHVMTG 242          
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Match: A0A7S1SL14_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SL14_9CHLO)

HSP 1 Score: 124 bits (312), Expect = 1.890e-31
Identity = 62/123 (50.41%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    4 VKAEDVMQGAVGDCWLVAAMATLAGSMPGSIRKLFGNSQRSLRCVRVGKYKVRLFDVSRDQWTTIIVDDIIPT--RNGKPLFAKPNGKELWVVLLEKAIAKHCGSYSAIAGGYEAWGLKVLTG 366
            +   D+ QG +GDCWL++A A LA + PG+I+++F N   +      GKYK++LF    ++W  I +DD IP   RNG+PLFAKP G E WV+LLEKA AK+CGSYSA+ GG+  W L+ LTG
Sbjct:   97 INPSDIQQGKLGDCWLLSAFACLA-NYPGAIQRVFCNKTLN----HYGKYKIKLFSRPLNKWVVIKIDDRIPCDPRNGEPLFAKPVGSEAWVMLLEKAFAKYCGSYSALDGGHTLWALEALTG 214          
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Match: F0XXB9_AURAN (Calpain catalytic domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXB9_AURAN)

HSP 1 Score: 123 bits (308), Expect = 2.750e-31
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 1
Query:    4 VKAEDVMQGAVGDCWLVAAMATLAGSMPGSIRKLFGNSQRSLRCVRVGKYKVRLFDVSRDQWTTIIVDDIIPTRNGKPLFAKPNGKELWVVLLEKAIAKHCGSYSAIAGGYEAWGLKVLTG 366
            ++A+DV QGA+GDCWL++A+A +     G+I+++F + + + R    GKY V LFD+   +W TI+VDD+ P +NGK +F++PNG E WV++LEKA AK CGSY AI GG   W  + +TG
Sbjct:   50 IEAKDVCQGALGDCWLLSAIACMT-EFHGAIQQIFYSHKANPR----GKYYVELFDIQAGKWVTIVVDDLFPHKNGKLMFSQPNGDEEWVLILEKAFAKLCGSYHAIEGGLVLWAFQAMTG 165          
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Match: A0A7S0N3J2_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N3J2_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 3.790e-30
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    4 VKAEDVMQGAVGDCWLVAAMATLAGSMPGSIRKLFGNSQRSLRCVRVGKYKVRLFDVSRDQWTTIIVDDIIPTRNG--KPLFAKPNGKELWVVLLEKAIAKHCGSYSAIAGGYEAWGLKVLTG 366
            ++ +DV QGAVGDCWL+AA A LA   PG+I+K+F   + + R     KY+VRL+D    +W T+ +DD IP   G  K  F+KPNG E+WV+LLEKA AK CGSY+ + GG+  W  + +TG
Sbjct:  127 IEPQDVAQGAVGDCWLIAAFACLA-EFPGAIQKVFVTREWNTR----RKYQVRLYDGFHQRWETVTIDDRIPVEKGTNKAAFSKPNGNEMWVILLEKAFAKFCGSYANLDGGHTVWAWQAMTG 244          
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Match: A0A0M0JH90_9EUKA (Calpain catalytic domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JH90_9EUKA)

HSP 1 Score: 121 bits (304), Expect = 4.390e-30
Identity = 60/124 (48.39%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 GVKAEDVMQGAVGDCWLVAAMATLAGSMPGSIRKLFGNSQRSLRCVRVGKYKVRLFDVSRDQWTTIIVDDIIPTRN--GKPLFAKPNGKELWVVLLEKAIAKHCGSYSAIAGGYEAWGLKVLTG 366
            GV   D+ QGAVGDCWL++A+  +A   PG + K+F  +  S R    GKY +RLFD     W T+ +DD++P     G+ LFA+P G+ELWV+LLEKA AK CGSY  + GG E W  + LTG
Sbjct:  136 GVSVSDIAQGAVGDCWLMSALCCMA-EHPGQLYKIFVQNAYSDR----GKYSIRLFDGRAGMWVTVTIDDLLPVEKATGRLLFAQPKGRELWVLLLEKAFAKFCGSYEGLNGGNEIWAFEALTG 254          
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Match: A0A7S1AKB1_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AKB1_NOCSC)

HSP 1 Score: 120 bits (301), Expect = 1.150e-29
Identity = 60/128 (46.88%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    4 VKAEDVMQGAVGDCWLVAAMATLAGSMPGSIRKLFGNSQRSLRCVRVGKYKVRLFDVSRDQWTTIIVDDIIP-------TRNGKPLFAKPNGKELWVVLLEKAIAKHCGSYSAIAGGYEAWGLKVLTG 366
            V ++D+ QGA+GDCWL+AAMA LA    G+I  LF   +R+ R    GKY++RLF+   ++W  I++DD IP       ++N +PLF +PN  ELWV+LLEKA AK CG+Y+A+ GG   W ++ +TG
Sbjct:  147 VNSKDICQGALGDCWLLAAMACLA-EHSGAIDALFRTKERNPR----GKYRLRLFNGVTEEWEKILIDDFIPCDEQSVASKNPRPLFTRPNQNELWVMLLEKAFAKFCGNYAALEGGTTIWAIRAMTG 269          
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Match: A0A7S0J7G9_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J7G9_9EUKA)

HSP 1 Score: 119 bits (297), Expect = 1.520e-29
Identity = 63/124 (50.81%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    1 GVKAEDVMQGAVGDCWLVAAMATLAGSMPGSIRKLFGNSQRSLRCVRVGKYKVRLFDVSRDQWTTIIVDDIIPTRNG--KPLFAKPNGKELWVVLLEKAIAKHCGSYSAIAGGYEAWGLKVLTG 366
            G++  D+ QGAVGDCWLVAA+A+ A   P  IR  F   + + R    G YKVRL D    +W T+++DD IP + G  +P F K +GKELW VLLEKA AK CGSY+A+ GG+  WG   LTG
Sbjct:  135 GIEPADLCQGAVGDCWLVAALAS-AAEHPSCIRNAFRMFEANSR----GMYKVRLSDPETQRWKTVVIDDRIPCKKGTNQPEFMKCDGKELWAVLLEKAFAKFCGSYAALDGGWCVWGWAALTG 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51629.12435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB20_ECTSI9.860e-6179.51Calcium-dependent cytoplasmic cysteine proteinase,... [more]
A0A6H5L4V1_9PHAE3.520e-3679.22Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6U5W761_GUITH1.710e-3247.46Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
R1DIU9_EMIHU1.200e-3150.81Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S1SL14_9CHLO1.890e-3150.41Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
F0XXB9_AURAN2.750e-3147.93Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S0N3J2_9CHLO3.790e-3048.78Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A0M0JH90_9EUKA4.390e-3048.39Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S1AKB1_NOCSC1.150e-2946.88Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S0J7G9_9EUKA1.520e-2950.81Hypothetical protein (Fragment) n=2 Tax=Calcidiscu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51629contigH-elongata_contig51629:637..1702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue3e-46
Seed eggNOG ortholog2880.D8LB20
KEGG koko:K08582
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons3
Model size366
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51629.12435.1prot_H-elongata_contig51629.12435.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51629 637..1681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.817742-CDS-H-elongata_contig51629:636..7031622930844.817742-CDS-H-elongata_contig51629:636..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51629 637..703 -
1691679594.7948966-CDS-H-elongata_contig51629:636..7031691679594.7948966-CDS-H-elongata_contig51629:636..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51629 637..703 -
1622930844.833806-CDS-H-elongata_contig51629:977..11331622930844.833806-CDS-H-elongata_contig51629:977..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51629 978..1133 -
1691679594.8140812-CDS-H-elongata_contig51629:977..11331691679594.8140812-CDS-H-elongata_contig51629:977..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51629 978..1133 -
1622930844.8671021-CDS-H-elongata_contig51629:1559..16811622930844.8671021-CDS-H-elongata_contig51629:1559..1681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51629 1560..1681 -
1691679594.8240294-CDS-H-elongata_contig51629:1559..16811691679594.8240294-CDS-H-elongata_contig51629:1559..1681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51629 1560..1681 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.932465-UTR-H-elongata_contig51629:1681..17021622930844.932465-UTR-H-elongata_contig51629:1681..1702Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51629 1682..1702 -
1691679594.833253-UTR-H-elongata_contig51629:1681..17021691679594.833253-UTR-H-elongata_contig51629:1681..1702Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51629 1682..1702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51629.12435.1

>prot_H-elongata_contig51629.12435.1 ID=prot_H-elongata_contig51629.12435.1|Name=mRNA_H-elongata_contig51629.12435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MQGAVGDCWLVAAMATLAGSMPGSIRKLFGNSQRSLRCVRVGKYKVRLFD
VSRDQWTTIIVDDIIPTRNGKPLFAKPNGKELWVVLLEKAIAKHCGSYSA
IAGGYEAWGLKVLTG
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mRNA from alignment at H-elongata_contig51629:637..1702-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51629.12435.1 ID=mRNA_H-elongata_contig51629.12435.1|Name=mRNA_H-elongata_contig51629.12435.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1066bp|location=Sequence derived from alignment at H-elongata_contig51629:637..1702- (Himanthalia elongata Himel1 dioecious)
GGCGTCAAAGCCGAGGACGTGATGCAAGGAGCGGTTGGCGACTGCTGGCT GGTCGCGGCGATGGCCACCCTCGCGGGCTCCATGCCGGGGTCCATAAGGA AGCTATTCGGAAATTCCCAGCGCTCCTTGAGGTGTGTGCGTGTGTGTGTA TTCATTTAATTGTGCATAACCGCGCCGTTCATTCCATGTCACTGCATATA ACCCACCCGGGGGCTGTGTGTGTGCGTGTGTGTTTAAGTTTCGTACGGAA CGGCTTGAAGTAGACGCCGTCTTAGCTACAACTTGGGTGTTTGAGTTTCC GACCTCCCTCCTCGCATGGATGAGCCTCCATGTTCCGTGTCGGAACCTAC GCGGTGCAAGGCGCTTAATTGTGTCTGATTGTGCAAGGTCGACCGGTCCA AAGTGGCAGGTGACCTCTGGTCATATAAGCCCGACATATTTTCTTCGCAT TTGTGGTTTTAGAGGCTGTCTTCGTTTGGTCGGCATGGCCGTTAGAACCG ACGCCGCGCTGCCCGTACTTGGCCTCTCACGCTTCATTTCTTCGCCCGGT GTATACTCGTACCCGAAAGGGGGAAGTACAAGGTGCGGCTGTTTGACGTG TCGCGGGACCAATGGACAACCATTATCGTGGACGACATCATCCCCACGCG CAACGGGAAGCCTCTGTTTGCTAAGCCCAACGGCAAGGAGCTGTGGGTCG TCCTGCTGGAGAAGGCCATTGCCAAGTGAGACGACGTCGCGCACGGCTCG CGATACGTTGTTTGTGGCCAAAACGCCTCCTCTGGCCGAAACGCCTCGTC CTACTTTACCGGCGGGTGATCGACTCGTTTTCTCTCGCCACGTTTTTTTG TTCTGTGGTTATGATCGTGCTTCGAGTACGGAGTCTCATAGTGGACAAGG TTGATGGTTGTGCTAGGCGTGGTGGAGAGTGACGTGTCGGGCGTACCGCT CTGTCTTGAGGTTCGCTCGGATGTCTCGTCTTTTGATCTCGTCTCACAGG CATTGTGGGAGCTACTCGGCCATTGCAGGAGGATACGAAGCCTGGGGGCT CAAGGTCCTGACCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig51629:637..1702-

>mRNA_H-elongata_contig51629.12435.1 ID=mRNA_H-elongata_contig51629.12435.1|Name=mRNA_H-elongata_contig51629.12435.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig51629:637..1702- (Himanthalia elongata Himel1 dioecious)
ATGCAAGGAGCGGTTGGCGACTGCTGGCTGGTCGCGGCGATGGCCACCCT
CGCGGGCTCCATGCCGGGGTCCATAAGGAAGCTATTCGGAAATTCCCAGC
GCTCCTTGAGGTGTGTGCGTGTATGCAAGGAGCGGTTGGCGACTGCTGGC
TGGTCGCGGCGATGGCCACCCTCGCGGGCTCCATGCCGGGGTCCATAAGG
AAGCTATTCGGAAATTCCCAGCGCTCCTTGAGGTGTGTGCGTGTGGGGAA
GTACAAGGTGCGGCTGTTTGACGTGTCGCGGGACCAATGGACAACCATTA
TCGTGGACGACATCATCCCCACGCGCAACGGGAAGCCTCTGTTTGCTAAG
CCCAACGGCAAGGAGCTGTGGGTCGTCCTGCTGGAGAAGGCCATTGCCAA
GGGGAAGTACAAGGTGCGGCTGTTTGACGTGTCGCGGGACCAATGGACAA
CCATTATCGTGGACGACATCATCCCCACGCGCAACGGGAAGCCTCTGTTT
GCTAAGCCCAACGGCAAGGAGCTGTGGGTCGTCCTGCTGGAGAAGGCCAT
TGCCAAGCATTGTGGGAGCTACTCGGCCATTGCAGGAGGATACGAAGCCT
GGGGGCTCAAGGTCCTGACCGGCGCATTGTGGGAGCTACTCGGCCATTGC
AGGAGGATACGAAGCCTGGGGGCTCAAGGTCCTGACCGGC
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