mRNA_H-elongata_contig51598.12426.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: D8LIC7_ECTSI (Intraflagellar transport protein 80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC7_ECTSI) HSP 1 Score: 403 bits (1036), Expect = 2.610e-133 Identity = 196/255 (76.86%), Postives = 223/255 (87.45%), Query Frame = 1
Query: 1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLC-LVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
IWTYEGR VSNPRFQNLRA+YLS R ISLSEDA+AILDR SPK VRVCDV+TGRPLADGR EV+H+CEVEEVFL+QF+KGL ERRLAFIDRNKELWLC +V + P K+KLHTQVESAAWNDK D+L AIAD RLITWYYPNAV+IDRD+L LASTS DAAEFGKSPR++SF+G+ +MVRRADGALLSAAVAPYPA LY+SV+ QRW EA+RLCRLV++ ELWACM CMAL G NL L+EEAL+A++EV
Sbjct: 390 IWTYEGRHVSNPRFQNLRADYLSGRAISLSEDAVAILDRSSPKCVRVCDVATGRPLADGRAAEVVHECEVEEVFLSQFSKGLSERRLAFIDRNKELWLCPVVSRSAGRSSVPAKHKLHTQVESAAWNDKGDILTAIADGRLITWYYPNAVAIDRDLLVLASTSRDAAEFGKSPRVVSFYGAKVMVRRADGALLSAAVAPYPAMLYASVQGQRWEEAVRLCRLVQSRELWACMGCMALNGKNLQLAEEALAAIQEV 644
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: D8LRF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF2_ECTSI) HSP 1 Score: 382 bits (982), Expect = 1.650e-129 Identity = 189/255 (74.12%), Postives = 217/255 (85.10%), Query Frame = 1
Query: 1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLC-LVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
IW YEGR VSNPRFQNLRA+YLS R ISLSEDA+AILDR SP+ VRVCDV+TGRPLAD R EV+H+CEVEEVFL+QF+KGL ERRLAFIDRNK+LWLC +V + P K+KLHTQVESAAWN K D+L AIAD RLITWYYPNAV+IDRD+L LASTS DAAEF KSPR++SF+G+ +MVRRADGALLSAAVAPYPA LY+SVR QRW EA+RLCR ++ ELWACM CMAL G NL L+EEAL+A++EV
Sbjct: 45 IWIYEGRHVSNPRFQNLRADYLSGRAISLSEDAVAILDRSSPRCVRVCDVATGRPLADERVAEVVHECEVEEVFLSQFSKGLSERRLAFIDRNKKLWLCPVVSSSAGRSSVPAKHKLHTQVESAAWNGKGDILTAIADGRLITWYYPNAVAIDRDLLVLASTSRDAAEFCKSPRVVSFYGAKVMVRRADGALLSAAVAPYPAMLYASVRGQRWEEAVRLCR--RSRELWACMGCMALNGKNLQLAEEALAAIQEV 297
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A835ZN10_9STRA (Intraflagellar transport protein 80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZN10_9STRA) HSP 1 Score: 284 bits (727), Expect = 1.750e-87 Identity = 140/254 (55.12%), Postives = 182/254 (71.65%), Query Frame = 1
Query: 1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCLVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
IW+Y+GRQ+S P+ NLR E LSRR ISLS D +A LDR K+VR+CD TGR LA+G V+HDCEV E+ L+QFA GL ERRLA IDRN++LWL + G + + KLHTQV+SA WND D LVA+AD RL+TWY+P+A +D+D++ LA ++ +A EFGKSP + +F ++ VRRADGALL+A V PYPA L++ WGEA+RLCR V ++ LWA A MALQ NL ++EEAL+A+K V
Sbjct: 390 IWSYDGRQISAPKLPNLRPELLSRRTISLSADVLAALDRTDGKTVRLCDALTGRALAEGA---VVHDCEVLEIGLSQFAPGLSERRLALIDRNRDLWLYALGGGQGGGGSKGRNKLHTQVDSAEWNDVCDCLVALADGRLVTWYHPSAAYVDKDLMALACSTREAPEFGKSPTVRAFLNGSVTVRRADGALLTARVPPYPALLHACAARGAWGEALRLCRFVADEGLWAACAAMALQARNLDVAEEALAAIKAV 640
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A7S2G6X5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6X5_9STRA) HSP 1 Score: 253 bits (647), Expect = 9.950e-76 Identity = 129/255 (50.59%), Postives = 175/255 (68.63%), Query Frame = 1
Query: 1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLC-LVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
I+ YEGRQVSNPRF NL+ E+L+R ++LS+D +AILDR K+VR DV+TG+ L+ V H E+ ++ LNQ L ERRLA IDRN++L+L +V P G YKL TQV+S AWND SD+L AIAD R+I WYYPN V +DRD+L + D +EFGK P++ +F+GS L VR+ADGAL++ +V+ Y + LY + RW E++RLCR VK+D+LW C+A M++Q L +E AL+AL EV
Sbjct: 396 IYNYEGRQVSNPRFNNLQPEFLNRHTVALSKDVVAILDRTDSKTVRCFDVATGKALSTN----VTHKTEIVQIALNQSDVPLSERRLALIDRNRDLYLTPVVPQP---GIFRGVYKLQTQVDSMAWNDSSDMLAAIADGRMICWYYPNVVFVDRDLLPSTTIEKDGSEFGKVPQVSTFYGSRLTVRKADGALVTTSVSCYASMLYRYIGESRWEESVRLCRFVKDDKLWGCLAVMSIQNRKLETAEIALAALTEV 643
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A7S2WFK5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFK5_9STRA) HSP 1 Score: 245 bits (625), Expect = 1.730e-72 Identity = 126/254 (49.61%), Postives = 168/254 (66.14%), Query Frame = 1
Query: 1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLC-LVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKE 759
++TYEGRQVS PRF LR E+L+R +SLS D +AILDR K++R DV+ GR L + + H E+ + LNQ A+G+ ERRL IDRN++L + +V P G YKL TQV+S AWND SD+L AIAD R ITWYYPN V +DRD+L + DA +FGK P++++F G+ VRRADGA+L+ VAP+ LY RW EAIRLCR VK+++LW C+A M++Q L +E AL++L E
Sbjct: 403 VYTYEGRQVSTPRFNGLRGEFLNRHTVSLSNDCVAILDRSDSKTIRCFDVNNGRQLGN----PITHKVEIVHLALNQGAQGIQERRLTLIDRNRDLHITPVVPQP---GIFRGMYKLQTQVDSMAWNDTSDMLCAIADGRFITWYYPNVVFVDRDLLPGTAAEKDATDFGKVPQLVAFCGNRASVRRADGAVLTTNVAPHTPMLYRLAAANRWEEAIRLCRFVKDNKLWGCLAAMSIQNRQLDTAEVALASLNE 649
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A7R9UC56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC56_9STRA) HSP 1 Score: 221 bits (563), Expect = 8.610e-68 Identity = 118/271 (43.54%), Postives = 156/271 (57.56%), Query Frame = 1
Query: 1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCLVQH-PTVKGKAPPK----------------YKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
+ YEGRQ+SNP+FQ L+ + L+ I L+ D + ++D PK +R D +GR A T H +E V L+QFA+GL R +AFIDRN++LWLCLV + +G+ +KL TQV++ AW D SD L AIAD RLITWYYP A + RD+L + E GK P I SF S L VRRADGA+L+ P LY + QRW EA+RLCR VK D +WA +A MA++ L +E AL+A+ EV
Sbjct: 4 VMNYEGRQLSNPKFQGLQCDLLNSSTIGLAPDTVCVIDSSDPKVLRCFDALSGRLFAGSIT----HTAPIESVALSQFAQGLERRMIAFIDRNRDLWLCLVSGGASARGRGRRGEEGDEAANSTQNQDRCFKLQTQVDTMAWGDTSDTLCAIADGRLITWYYPMAAFVSRDLLPRTKKVVPCPEMGKHPTIASFQDSHLSVRRADGAVLNVGTVCGPPLLYEFIEEQRWEEAVRLCRFVKEDAMWAALAAMAIKDRQLETAETALAAIHEV 270
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A7S1C6H3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6H3_9STRA) HSP 1 Score: 229 bits (583), Expect = 1.600e-66 Identity = 115/256 (44.92%), Postives = 167/256 (65.23%), Query Frame = 1
Query: 1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCLV--QHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
+++Y+GR +SNPRF +R E+L+RR + LS D +AILD+ K++R D +T R ++D + H ++ E+ ++Q+A G ER++ FID N+++++ V QH + KL T V+S AWND SD LVA+AD +L+TW YPN V +D+D+L +TS FGK P+I +FFG+ + VRRADGALL+A V P LY VR RW EA+RLCR VK +LWA +A MA+ +L +E AL+A+ EV
Sbjct: 391 VYSYDGRVLSNPRFAGIRVEFLNRRTLGLSSDTVAILDKADGKTIRCFDAATARHISD-----ITHHMDIVEIAVSQYATGTAERKVVFIDSNRDMYITPVLRQH---------QVKLSTMVDSVAWNDVSDTLVALADGKLVTWTYPNVVFVDKDLLPATTTSKAGDMFGKLPQIHTFFGTRVTVRRADGALLTANVGVSPPLLYEFVRGSRWEEAVRLCRFVKAPDLWAALAAMAINEKHLHTAEIALAAINEV 632
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: R7TDL0_CAPTE (Uncharacterized protein n=2 Tax=Capitella teleta TaxID=283909 RepID=R7TDL0_CAPTE) HSP 1 Score: 227 bits (578), Expect = 1.010e-65 Identity = 107/253 (42.29%), Postives = 170/253 (67.19%), Query Frame = 1
Query: 1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCLVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKE 759
++TYEGR V +P+F +R + L+ + +SLS+D IAI D+ K + + ++STG+PL DG+ +H EV EV+L+Q ERRLA +D+N++L+L V+ V GK KL T + S WND++++L A+++ +L+ W+YPNA S+D+D++ + + EFGKSP+++SF G + VRRA+G++L+ +V+PYP+ L++ V RW +A+RLCR VK + LWAC+A MA G L +E A +A+ E
Sbjct: 397 VYTYEGRMVCSPKFPGMRTDILNEQTVSLSDDTIAIRDKTDEKVIHMFELSTGKPLGDGKP--YIHKIEVMEVYLDQCGTAT-ERRLAIVDKNRDLYLTQVR---VYGKDRKTVKLSTMINSLLWNDETNMLAALSEGKLLVWFYPNASSVDKDLISRTTYERETNEFGKSPQLLSFLGKQISVRRAEGSILTTSVSPYPSILHNCVTLGRWDDAVRLCRFVKEESLWACLAAMAAYGKQLGTAEVAYAAIDE 643
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: UPI001EE5F7DE (intraflagellar transport protein 80 homolog n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE5F7DE) HSP 1 Score: 225 bits (573), Expect = 6.380e-65 Identity = 113/253 (44.66%), Postives = 166/253 (65.61%), Query Frame = 1
Query: 1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCLVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKE 759
+++Y+GR V +PR Q ++A+ L+ + ISLS D +AI D+ K V V D TG+ + DG+ V H EV EV L+QF ERRLA ID+N++L+L V+ V G KL T ++S AWND +++L A+ D ++ WYYPNAV +DRD+L DA+EFGK+P+++ F G+ L++RR++G+L+S V+PYP L+S + RWG+++RLCR VK D LWAC+A MA L +E A +A+KE
Sbjct: 399 VYSYDGRLVCSPRHQGMKADILNTQTISLSNDTVAIRDKADEKVVYVFDAQTGKSMGDGKP--VTHKVEVMEVALDQFGPAT-ERRLAIIDKNRDLYLTSVR---VFGTDRKSVKLGTMIQSLAWNDDTNMLAAMTDGCVLVWYYPNAVFVDRDLLPKTLYRKDASEFGKAPQLIDFVGNHLILRRSEGSLISTTVSPYPGVLHSYANSSRWGDSLRLCRFVKEDTLWACLAAMASYAKELNTAEVAYAAIKE 645
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A851B3Y4_PICGY (IFT80 protein (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A851B3Y4_PICGY) HSP 1 Score: 219 bits (559), Expect = 7.860e-65 Identity = 107/255 (41.96%), Postives = 170/255 (66.67%), Query Frame = 1
Query: 1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGL-GERRLAFIDRNKELWLCLVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
+++YEGR +S+P++ ++RA+ L+ + +SLS D +A+ D+ K + + + +G+PL DG+ + H E+ E+ L+Q KGL ER++AFID+N++L++ V+ GK K+ T V+S AWND S++L I DSR WYYPN V +D+D+L DA+EFGK+P+I+SF G+ + VRRADG+L+ V+PYPA L+ V + RW + +RLCR VK+ LWAC+A MA+ ++ +E A +A+ E+
Sbjct: 184 LYSYEGRLISSPKYPSMRADILNAQTVSLSNDTLAVKDKADEKVIYIFEALSGKPLGDGKP--LTHKTEIVEIALDQ--KGLTSERKIAFIDKNRDLFITSVKR---FGKEQKIVKIGTMVQSLAWNDTSNILCGIQDSRFTVWYYPNTVYVDKDLLPKTLYEKDASEFGKTPQIVSFAGNGITVRRADGSLVHLHVSPYPAVLHDYVSSSRWEDGVRLCRFVKDQTLWACLAAMAVANKDMTTAEIAYAAIGEI 431 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51598.12426.1 >prot_H-elongata_contig51598.12426.1 ID=prot_H-elongata_contig51598.12426.1|Name=mRNA_H-elongata_contig51598.12426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVback to top mRNA from alignment at H-elongata_contig51598:335..2315- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51598.12426.1 ID=mRNA_H-elongata_contig51598.12426.1|Name=mRNA_H-elongata_contig51598.12426.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1981bp|location=Sequence derived from alignment at H-elongata_contig51598:335..2315- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51598:335..2315- >mRNA_H-elongata_contig51598.12426.1 ID=mRNA_H-elongata_contig51598.12426.1|Name=mRNA_H-elongata_contig51598.12426.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig51598:335..2315- (Himanthalia elongata Himel1 dioecious)back to top |