mRNA_H-elongata_contig51553.12422.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51553.12422.1
Unique NamemRNA_H-elongata_contig51553.12422.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51553.12422.1 vs. uniprot
Match: A0A6H5KZY7_9PHAE (SnoaL-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 9.090e-37
Identity = 60/101 (59.41%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 VEKILLDYSESSVITTYNQSSTEKTVFKGLEGVRTMFTGIFETLSDMSDLAAPITDVDEDGKIIFITWKCPASGFMDATDTFIF-DNENKIRRHTVVFRTG 300
            +E+ILLDY E SV+TTY+Q++ +KTVFKG+EG RT+F G+FE LSD SDLAAP+ DV E+  ++F+ W+CPASGF+DATDTF   D   KI R  V ++TG
Sbjct:   75 MERILLDYDEDSVVTTYDQTADKKTVFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKTG 175
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BLAST of mRNA_H-elongata_contig51553.12422.1 vs. uniprot
Match: D7G623_ECTSI (SnoaL-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G623_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 5.470e-35
Identity = 57/101 (56.44%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    1 VEKILLDYSESSVITTYNQSSTEKTVFKGLEGVRTMFTGIFETLSDMSDLAAPITDVDEDGKIIFITWKCPASGFMDATDTFIF-DNENKIRRHTVVFRTG 300
            +++ILLDY E SV+TTY+Q++   +VFKG+EG RT+F G+FE LSD SDLAAP+ DV E+  ++F+ W+CPASGF+DATDTF   D   KI R  V ++TG
Sbjct:   24 MDRILLDYDEDSVVTTYDQTADRISVFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKTG 124
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BLAST of mRNA_H-elongata_contig51553.12422.1 vs. uniprot
Match: A0A812KSN4_9DINO (CasB protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KSN4_9DINO)

HSP 1 Score: 100 bits (248), Expect = 1.420e-24
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 VEKILLDYSESSVITTYNQSSTEKTVFKGLEGVRTMFTGIFETLSDMSDLAAPITDVDEDGKIIFITWKCPASGFMDATDTFIFDNENKIRRHTVVFRTG 300
            ++KI+LDY ++S+   YN     K+ F G   +R MFT +F  LS++  L AP+ DVDE GK +F+ W+CP  G+  ATDTF+F  +NKI+R  +V   G
Sbjct:   54 LDKIMLDYDDTSIAKVYNNKDGSKSEFVGKVQIRNMFTDLFADLSNLDTLKAPVVDVDEAGKTVFLVWECPGCGYHTATDTFVFGPDNKIKRQNIVVTKG 153
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BLAST of mRNA_H-elongata_contig51553.12422.1 vs. uniprot
Match: A0A812STE6_9DINO (CasB protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812STE6_9DINO)

HSP 1 Score: 100 bits (250), Expect = 2.270e-24
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 VEKILLDYSESSVITTYNQSSTEKTVFKGLEGVRTMFTGIFETLSDMSDLAAPITDVDEDGKIIFITWKCPASGFMDATDTFIFDNENKIRRHTVVFRTG 300
            ++KI+LDY ++SV   YN     K+ F G   +R MFT +F  LS++  L AP+ DVDE GK +F+ W+CP SG+   TDTF+F  +NKI+R  +V   G
Sbjct:  100 LDKIMLDYDDTSVAKVYNNKDGSKSEFVGRVQIRNMFTNLFSDLSNLDTLKAPVVDVDEAGKTVFLVWECPGSGYHFGTDTFVFGPDNKIKRQNIVVTKG 199
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BLAST of mRNA_H-elongata_contig51553.12422.1 vs. uniprot
Match: A0A812Z7R4_9DINO (CasB protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Z7R4_9DINO)

HSP 1 Score: 100 bits (248), Expect = 4.040e-24
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 VEKILLDYSESSVITTYNQSSTEKTVFKGLEGVRTMFTGIFETLSDMSDLAAPITDVDEDGKIIFITWKCPASGFMDATDTFIFDNENKIRRHTVVFRTG 300
            ++KI+LDY ++S+   YN     K+ F G   +R MFT +F  LS++  L AP+ DVDE GK +F+ W+CP  G+  ATDTF+F  +NKI+R  +V   G
Sbjct:   97 LDKIMLDYDDTSIAKVYNNKDGSKSEFVGKVQIRNMFTDLFADLSNLETLKAPVVDVDEAGKTVFLVWECPGCGYHTATDTFVFGPDNKIKRQNIVVTKG 196
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BLAST of mRNA_H-elongata_contig51553.12422.1 vs. uniprot
Match: A0A813B714_SYMMI (CasB protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813B714_SYMMI)

HSP 1 Score: 98.6 bits (244), Expect = 3.640e-22
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 VEKILLDYSESSVITTYNQSSTEKTVFKGLEGVRTMFTGIFETLSDMSDLAAPITDVDEDGKIIFITWKCPASGFMDATDTFIFDNENKIRRHTVV 288
            ++KI+LDY ++S+   YN     K+ F G   +R MFT +F  LS++  L AP+ DVDE GK +F+ W+CP  G+  ATDTF+F  +NKI+R  +V
Sbjct:  107 LDKIMLDYDDTSIAKVYNNKDGSKSEFVGKVQIRNMFTDLFADLSNLDTLKAPVVDVDEAGKTVFLVWECPGCGYHTATDTFVFGPDNKIKRQNIV 202
[Close]
BLAST of mRNA_H-elongata_contig51553.12422.1 vs. uniprot
Match: A0A1Q9EQB8_SYMMI (Metacaspase-1B n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EQB8_SYMMI)

HSP 1 Score: 98.6 bits (244), Expect = 6.930e-22
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 VEKILLDYSESSVITTYNQSSTEKTVFKGLEGVRTMFTGIFETLSDMSDLAAPITDVDEDGKIIFITWKCPASGFMDATDTFIFDNENKIRRHTVV 288
            ++KI+LDY ++S+   YN     K+ F G   +R MFT +F  LS++  L AP+ DVDE GK +F+ W+CP  G+  ATDTF+F  +NKI+R  +V
Sbjct:   97 LDKIMLDYDDTSIAKVYNNKDGSKSEFVGKVQIRNMFTDLFADLSNLDTLKAPVVDVDEAGKTVFLVWECPGCGYHTATDTFVFGPDNKIKRQNIV 192
[Close]
BLAST of mRNA_H-elongata_contig51553.12422.1 vs. uniprot
Match: A0A8J2SYK6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYK6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.980e-20
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 VEKILLDYSESSVITTYNQSSTEKTVFKGLEGVRTMFTGIFETLSDMSDLAAPITDVDEDG-KIIFITWKCPASGFMDATDTFIFDNENKIRRHTV 285
            V K+LLDY E S I  YN     +TV+ G+ G    FTG+F  L D+S LAAP   V+E   K +F+ W+CP+SGF+  TDTF+F++  KI R TV
Sbjct:   21 VSKVLLDYCEESKIIVYNWHDDTETVYNGMAGACECFTGLFAALPDLSGLAAPEIHVEEGNPKSVFLIWRCPSSGFVHCTDTFLFNDAGKIVRQTV 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51553.12422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KZY7_9PHAE9.090e-3759.41SnoaL-like domain-containing protein n=1 Tax=Ectoc... [more]
D7G623_ECTSI5.470e-3556.44SnoaL-like domain-containing protein n=1 Tax=Ectoc... [more]
A0A812KSN4_9DINO1.420e-2444.00CasB protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A812STE6_9DINO2.270e-2445.00CasB protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A812Z7R4_9DINO4.040e-2444.00CasB protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A813B714_SYMMI3.640e-2244.79CasB protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A1Q9EQB8_SYMMI6.930e-2244.79Metacaspase-1B n=1 Tax=Symbiodinium microadriaticu... [more]
A0A8J2SYK6_9STRA2.980e-2047.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51553contigH-elongata_contig51553:1429..2353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue8.2e-16
Seed eggNOG ortholog227086.JGI_V11_85307
KEGG rclassRC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686
KEGG koko:K01061,ko:K14515,ko:K18272
KEGG ReactionR03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222
KEGG Pathwayko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,ko04016,ko04075,map00361,map00364,map00623,map01100,map01110,map01120,map01130,map04016,map04075
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGsCOG0412@1,KOG3043@2759
EC3.1.1.45
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPolyketide cyclase SnoaL-like domain
Ec32 orthologEc-11_004820.1
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930843.269405-CDS-H-elongata_contig51553:1428..15211622930843.269405-CDS-H-elongata_contig51553:1428..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51553 1429..1521 +
1691679594.043995-CDS-H-elongata_contig51553:1428..15211691679594.043995-CDS-H-elongata_contig51553:1428..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51553 1429..1521 +
1622930843.2834022-CDS-H-elongata_contig51553:2143..23531622930843.2834022-CDS-H-elongata_contig51553:2143..2353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51553 2144..2353 +
1691679594.056403-CDS-H-elongata_contig51553:2143..23531691679594.056403-CDS-H-elongata_contig51553:2143..2353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51553 2144..2353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51553.12422.1prot_H-elongata_contig51553.12422.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51553 1429..2353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51553.12422.1

>prot_H-elongata_contig51553.12422.1 ID=prot_H-elongata_contig51553.12422.1|Name=mRNA_H-elongata_contig51553.12422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
VEKILLDYSESSVITTYNQSSTEKTVFKGLEGVRTMFTGIFETLSDMSDL
AAPITDVDEDGKIIFITWKCPASGFMDATDTFIFDNENKIRRHTVVFRTG
*
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mRNA from alignment at H-elongata_contig51553:1429..2353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51553.12422.1 ID=mRNA_H-elongata_contig51553.12422.1|Name=mRNA_H-elongata_contig51553.12422.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=925bp|location=Sequence derived from alignment at H-elongata_contig51553:1429..2353+ (Himanthalia elongata Himel1 dioecious)
GTGGAGAAGATCCTACTGGACTACAGCGAAAGCAGCGTTATCACGACATA
CAACCAGTCTTCTACCGAAAAGACGGTCTTCAAGGGGCTTGAGGTACGAA
AGCTTAACAATAGGAGGTGCCGCACTAATTCGTGGGAAATGTTCATCGAT
ACCTACCGAGATGATGTAACAAGTGACGAGCACTTAAAGCATGCCAAGGG
CATGTGAAACCTGCACGATTAAGAAGAGCCCTAGATACACCACATCGAAG
GACGCTCATAAATATGAGTCGATTACTATGACGGTCGCTGCTGCACTACA
GTTTGGCATGAAATAATAGGCTCGTTTATTGTAGAATCCACCTTGATATG
CCACGGGGCGTCGTTCCACACAAAAATCCCGGGGAGGTTTATGAAAGCGA
TCATTATTTTATTTTGATTGATTCTCTCTGGGTATTATTTGATATATTTT
GATGCAGACAAATCCAGACTATGCCCGATCGAGACGATGACTGCTGCTGT
GAAGTTAGCGCCCCCAGTAAGCACTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTCAGCCCGATAAATCGGGAACGGAAAAGTTAAGTTGTCCGACAG
GCAATGTTTTCAACCTCTAAGCTAGTTGAAAGCACAAATAAGGCGCAACG
TTTTTTTCCCTCAACGCGGACGCGATGTTCCAATGCCGGATGGACGTGAC
GATAATGAAAACCAGGGAGTTCGCACTATGTTCACGGGAATTTTCGAGAC
GCTTTCCGACATGAGCGACTTGGCTGCCCCGATTACCGACGTTGATGAAG
ATGGCAAGATTATATTTATCACCTGGAAGTGCCCCGCTTCCGGCTTCATG
GACGCCACCGACACGTTTATCTTTGACAACGAAAACAAGATTCGCCGCCA
CACCGTGGTGTTCAGGACGGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig51553:1429..2353+

>mRNA_H-elongata_contig51553.12422.1 ID=mRNA_H-elongata_contig51553.12422.1|Name=mRNA_H-elongata_contig51553.12422.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig51553:1429..2353+ (Himanthalia elongata Himel1 dioecious)
GTGGAGAAGATCCTACTGGACTACAGCGAAAGCAGCGTTATCACGACATA
CAACCAGTCTTCTACCGAAAAGACGGTCTTCAAGGGGCTTGAGGTGGAGA
AGATCCTACTGGACTACAGCGAAAGCAGCGTTATCACGACATACAACCAG
TCTTCTACCGAAAAGACGGTCTTCAAGGGGCTTGAGGGAGTTCGCACTAT
GTTCACGGGAATTTTCGAGACGCTTTCCGACATGAGCGACTTGGCTGCCC
CGATTACCGACGTTGATGAAGATGGCAAGATTATATTTATCACCTGGAAG
TGCCCCGCTTCCGGCTTCATGGACGCCACCGACACGTTTATCTTTGACAA
CGAAAACAAGATTCGCCGCCACACCGTGGTGTTCAGGACGGGGTAAGGAG
TTCGCACTATGTTCACGGGAATTTTCGAGACGCTTTCCGACATGAGCGAC
TTGGCTGCCCCGATTACCGACGTTGATGAAGATGGCAAGATTATATTTAT
CACCTGGAAGTGCCCCGCTTCCGGCTTCATGGACGCCACCGACACGTTTA
TCTTTGACAACGAAAACAAGATTCGCCGCCACACCGTGGTGTTCAGGACG
GGGTAA
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