mRNA_H-elongata_contig51517.12415.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51517.12415.1
Unique NamemRNA_H-elongata_contig51517.12415.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: D8LTW9_ECTSI (Bardet-Bield syndrome 8, Tetratricopeptide repeat domain 8 isoform B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW9_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 2.450e-89
Identity = 141/185 (76.22%), Postives = 161/185 (87.03%), Query Frame = 1
Query:    1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKA 555
            +R + STGRPLTGFQR     RPVSGQA DL T + G+RPA+SRPLTSMGRE+RLGTA MA  SA  G+ +G  FI+SS+LDLRRYARRP+LAMAL DYL++VERNPR+ALDL AE TTLKEF +WWWKARLGKCYYKLGMLREAERQLKSSL+DQDMV T+L+LVKVYTRLDLPNTALD+L+KA
Sbjct:   39 MRPMTSTGRPLTGFQRPGITVRPVSGQAMDLTTAMTGSRPASSRPLTSMGREVRLGTASMAL-SAGSGE-AGGLFIDSSRLDLRRYARRPSLAMALADYLVFVERNPRKALDLAAEATTLKEFKDWWWKARLGKCYYKLGMLREAERQLKSSLMDQDMVVTYLDLVKVYTRLDLPNTALDLLLKA 221          
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A7S1CCY2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCY2_9STRA)

HSP 1 Score: 248 bits (633), Expect = 3.680e-76
Identity = 129/238 (54.20%), Postives = 164/238 (68.91%), Query Frame = 1
Query:    1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT----VLSLDASNVEATASLAANHFY 702
            +R V   GRPLTGF R  T TRP +G  + +     G RP TSRP+T++GR++RLGTA M A +       G PF+   +LDLR+YARR  +A AL DYLLYVE NPR+AL+L AE T   EF +WWWKARLGKCYY+LG+ R+AERQ KS+L D DM+ ++LEL KVY +LD PNTA+D  +K +E HP E  +L+  AR +D+LND +       VL  DASNVEA A LA++HFY
Sbjct:  113 VRPVTGAGRPLTGFARPGTSTRPSTGSVS-VGDAFKGGRPGTSRPVTALGRQVRLGTASMTATA-------GGPFVNVDRLDLRKYARRSIIAKALCDYLLYVEHNPRKALELAAEATVRAEFKDWWWKARLGKCYYQLGLFRDAERQFKSALRDTDMIVSYLELCKVYVKLDQPNTAIDNYLKGAELHPGETSLLVGVARIYDMLNDAKGTDYYKKVLKYDASNVEAVACLASHHFY 342          
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A7S3UNH3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNH3_HETAK)

HSP 1 Score: 243 bits (619), Expect = 1.150e-75
Identity = 126/207 (60.87%), Postives = 153/207 (73.91%), Query Frame = 1
Query:   97 TTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
            T + G RP TSRP+TS+GRE+RLGTA MA        D G PFI   +LDL +YA+RP L+M L +YL+Y +RN R+ L+L AE T   E+ +WWWKARLGKCYYKLG+ R+AERQLKSSL DQDMV T LELVKVY +LDLPNTALD++ +A+  HP E R+LL  AR HD+L+D E A      VL LD+SNVEA +SLAANHFY
Sbjct:    5 TAMKGNRPGTSRPVTSLGRELRLGTASMAT-------DIGGPFINVDRLDLAKYAKRPTLSMVLCEYLVYHDRNARKGLELAAEATVHHEYKDWWWKARLGKCYYKLGLYRDAERQLKSSLKDQDMVVTVLELVKVYVKLDLPNTALDLMTEAAARHPGESRLLLGIARIHDMLSDHEAAVGYYKKVLQLDSSNVEAISSLAANHFY 204          
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A836CMW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW3_9STRA)

HSP 1 Score: 243 bits (620), Expect = 1.770e-74
Identity = 125/214 (58.41%), Postives = 159/214 (74.30%), Query Frame = 1
Query:   76 GQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENA-----TVLSLDASNVEATASLAANHFY 702
            GQ  D+ T + G RP TSRP T++GRE+RLGTA       ++    GA F+++ +LDL+R A+R ALA AL +YLLYVERNPR+AL+L AE T   +F +WWWKARLG+CY+KLGM R+AE+QLKSSL DQDM+ THLELVKVY RLDLPNTALD+L +A+  H  + R+ LA+AR H+ L+  E A     T L+LD +NVEATASLA N+FY
Sbjct:  112 GQQMDVSTAMRGPRPGTSRPATALGREVRLGTA-------SLDSGGGAAFVDTDRLDLKRMAKRGALAAALVEYLLYVERNPRKALELAAEATAAADFKDWWWKARLGRCYHKLGMYRDAEKQLKSSLKDQDMLLTHLELVKVYQRLDLPNTALDLLARAAVRHDGDARLALASARLHEALSAAEAAGAAYKTALALDPTNVEATASLAVNYFY 318          
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: H3G905_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3G905_PHYRM)

HSP 1 Score: 242 bits (618), Expect = 5.100e-74
Identity = 132/239 (55.23%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
            LR + +TGRPL+GF R  T +RP +G  + +   L G RP TSRP T++GR++RLGTA M A+      DSG  FI+ ++LD +RYA+RPA+A AL DYLLY E NPRRAL+L AE T   ++ +WWWKARLGKCYY+LG+ R+AE+Q +SSL +QDMV T LEL KVY RLD PNTALD   K     P + ++L++ AR HD+LND E +      VL LDASNVEA A LA+N+FY
Sbjct:  103 LRPMTATGRPLSGFARPGTSSRPGTGSMS-VDRALQGNRPGTSRPATTLGRQVRLGTASMQAS------DSGV-FIDVNRLDFKRYAKRPAIAKALVDYLLYCEHNPRRALELAAEATVAADYKDWWWKARLGKCYYQLGLFRDAEKQFESSLRNQDMVITFLELGKVYLRLDQPNTALDRYEKGKAKFPGDTQLLVSIARVHDMLNDVEKSVSVYKEVLQLDASNVEAIACLASNYFY 333          
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A5D6YDS4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDS4_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.350e-69
Identity = 127/239 (53.14%), Postives = 170/239 (71.13%), Query Frame = 1
Query:    1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
            +R + STGRPL+GF R  T +RP +G  + L   L G+RP TSRP T++GR++RLGTA M +  A++       FI+ ++LDL+RYA RPA+A AL DYLLY E NPR+AL+L AE T   ++ +WWWKARLGKCYY+LG+ R+AE+Q +SSL  Q+MV T LEL KVY RLD PNTAL    +A  + P + ++L+A+AR HD+LND + +      VL+LDAS+VEA A LA+N FY
Sbjct:  113 VRPMTSTGRPLSGFARPGTSSRPGTGSMS-LDRALQGSRPGTSRPPTTLGRQVRLGTASMQSIDASV-------FIDVNRLDLKRYAARPAIAKALVDYLLYHEHNPRKALELAAEATVAADYKDWWWKARLGKCYYQLGLFRDAEKQFESSLRCQEMVLTVLELGKVYLRLDQPNTALARYERARGAFPGDTQLLVASARVHDMLNDVDKSVALYKDVLALDASSVEAVACLASNLFY 343          
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: K3X8B7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8B7_GLOUD)

HSP 1 Score: 233 bits (595), Expect = 6.260e-69
Identity = 127/239 (53.14%), Postives = 167/239 (69.87%), Query Frame = 1
Query:    1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
            LR + STGRPL+GF R  T +RP +G  + +   L G+RP TSRP T++GR++RLGTA M +     G DSG  FI+ ++LD +RYA RPA+A  L DYLLY E NPR+AL+L AE T   ++ +WWWK RLGKCYY+LG+ R+AE+Q +SSL +Q+MV T LEL KVY RLD PNTALD   +A +  P +  +LL +AR HD+LN+ + A      VL LD+SN+EA A LA+N FY
Sbjct:  287 LRPMTSTGRPLSGFARPGTSSRPGTGSMS-IDRALQGSRPGTSRPPTTLGRQVRLGTASMQS-----GADSGM-FIDVNRLDFKRYAARPAIAKVLVDYLLYHEHNPRKALELAAEATVAVDYKDWWWKTRLGKCYYQLGLFRDAEKQFESSLRNQEMVITVLELCKVYLRLDQPNTALDRYDRARDKFPGDIHLLLGSARVHDMLNNVDRAVEIYKDVLQLDSSNIEAIACLASNFFY 518          
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A7S3G6M4_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G6M4_9EUKA)

HSP 1 Score: 220 bits (560), Expect = 2.500e-65
Identity = 121/239 (50.63%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
            +R ++  GRP +GF R  T +RP   Q   L   L G+RP TSRP+TS GR +RLGTA M +       + G PFI   KLDLR+YA R  LA  L DY++Y E NP++AL+L A  TT   + +WWWKARLGKCYY+LG+ REAE+Q  S+L   DMV T LEL KVY +LD PNTALD   +A+E HP + ++LL  +R +D LND   +      VL  DAS++EA A LAA+HFY
Sbjct:  111 VRPMSGAGRPTSGFVRPGTSSRP---QTNSLEGALAGSRPGTSRPVTSSGRFVRLGTASMLS-------EPGGPFINVEKLDLRKYAARTPLAKVLCDYIIYHEHNPKKALELCAHATTSSNYQDWWWKARLGKCYYQLGLYREAEKQFLSALKTADMVITTLELCKVYIKLDQPNTALDNYTRAAERHPGDTQLLLGISRIYDQLNDVTRSIQFYKRVLYFDASSIEAVACLAAHHFY 339          
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A812UTE9_9DINO (Ttc8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UTE9_9DINO)

HSP 1 Score: 220 bits (560), Expect = 8.860e-65
Identity = 123/240 (51.25%), Postives = 158/240 (65.83%), Query Frame = 1
Query:    1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAA-DLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
            +R V+++GRPLTGF R  T  RP S  A  D+ T + G R     PLTSMGR IRLGTA M        +  G  F+    LDL++YA+RPA+A AL DY+LY  RNPR+AL+L +E T   +F +WWWKARLGK YY+LG+LR+AE+Q KS+L D++M++THLEL KVY RLD PN+ALD   +A+E    E  IL+  ART+D+LN           VL  DA N EA A LA++HFY
Sbjct:  167 VRPVSASGRPLTGFARPGT-NRPTSSSAGRDVTTAMQGNRXXXXXPLTSMGRLIRLGTASMV-------NQDGGEFVRLESLDLQKYAQRPAIAKALCDYMLYYARNPRKALELASEATQAVDFKDWWWKARLGKAYYQLGLLRDAEKQFKSALKDEEMITTHLELCKVYLRLDQPNSALDQYGRAAEKFVGETHILIGLARTYDMLNALLRGVSFYKKVLQYDAVNSEAIACLASHHFY 398          
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A067BK52_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BK52_SAPPC)

HSP 1 Score: 215 bits (547), Expect = 1.410e-63
Identity = 111/207 (53.62%), Postives = 148/207 (71.50%), Query Frame = 1
Query:    4 RVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLND 624
            R ++++GRPL+GF R  T +RP +G + D    L GARP TSRP TS+GR++RLGTA M +     GD  G  FI   +LD++RYA RP +A AL DYLLY + NP++AL+L AE T   ++ +WWWKARLGKCYY+LG+LR+AE+Q +SSL  Q+MV T+LEL KVY +LD PNTAL+   +ASE  P +  +L+  AR HD+LND
Sbjct:   91 RPMSASGRPLSGFARPGTGSRPGTGLSLDQA--LQGARPGTSRPPTSLGRQVRLGTASMQS----QGD--GGAFISPDRLDMKRYAARPPIAKALVDYLLYHDHNPKKALELAAEATVAADYKDWWWKARLGKCYYQLGLLRDAEKQFESSLRSQEMVVTYLELCKVYLKLDQPNTALEYYRRASEKFPGDVHVLVGMARIHDMLND 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTW9_ECTSI2.450e-8976.22Bardet-Bield syndrome 8, Tetratricopeptide repeat ... [more]
A0A7S1CCY2_9STRA3.680e-7654.20Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3UNH3_HETAK1.150e-7560.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CMW3_9STRA1.770e-7458.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H3G905_PHYRM5.100e-7455.23Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
A0A5D6YDS4_9STRA1.350e-6953.14Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3X8B7_GLOUD6.260e-6953.14Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S3G6M4_9EUKA2.500e-6550.63Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A812UTE9_9DINO8.860e-6551.25Ttc8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A067BK52_SAPPC1.410e-6353.62Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51517contigH-elongata_contig51517:288..3717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.8
Seed ortholog evalue8.2e-62
Seed eggNOG ortholog164328.Phyra71427
Preferred nameBBS8
KEGG koko:K16781
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs3Q715@4776,COG0457@1,KOG1129@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categorymitochondrion
Exons7
Model size726
Cds size726
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.590067-CDS-H-elongata_contig51517:287..3741622930842.590067-CDS-H-elongata_contig51517:287..374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 288..374 -
1691679593.8037648-CDS-H-elongata_contig51517:287..3741691679593.8037648-CDS-H-elongata_contig51517:287..374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 288..374 -
1622930842.6123898-CDS-H-elongata_contig51517:671..7531622930842.6123898-CDS-H-elongata_contig51517:671..753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 672..753 -
1691679593.8183548-CDS-H-elongata_contig51517:671..7531691679593.8183548-CDS-H-elongata_contig51517:671..753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 672..753 -
1622930842.6289158-CDS-H-elongata_contig51517:1096..11521622930842.6289158-CDS-H-elongata_contig51517:1096..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 1097..1152 -
1691679593.8341656-CDS-H-elongata_contig51517:1096..11521691679593.8341656-CDS-H-elongata_contig51517:1096..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 1097..1152 -
1622930842.6436512-CDS-H-elongata_contig51517:1359..14421622930842.6436512-CDS-H-elongata_contig51517:1359..1442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 1360..1442 -
1691679593.84454-CDS-H-elongata_contig51517:1359..14421691679593.84454-CDS-H-elongata_contig51517:1359..1442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 1360..1442 -
1622930842.656784-CDS-H-elongata_contig51517:1687..17781622930842.656784-CDS-H-elongata_contig51517:1687..1778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 1688..1778 -
1691679593.854854-CDS-H-elongata_contig51517:1687..17781691679593.854854-CDS-H-elongata_contig51517:1687..1778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 1688..1778 -
1622930842.6773512-CDS-H-elongata_contig51517:1970..21451622930842.6773512-CDS-H-elongata_contig51517:1970..2145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 1971..2145 -
1691679593.8646603-CDS-H-elongata_contig51517:1970..21451691679593.8646603-CDS-H-elongata_contig51517:1970..2145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 1971..2145 -
1622930842.6946745-CDS-H-elongata_contig51517:3565..37171622930842.6946745-CDS-H-elongata_contig51517:3565..3717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 3566..3717 -
1691679593.8761194-CDS-H-elongata_contig51517:3565..37171691679593.8761194-CDS-H-elongata_contig51517:3565..3717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51517 3566..3717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51517.12415.1prot_H-elongata_contig51517.12415.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51517 288..3717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51517.12415.1

>prot_H-elongata_contig51517.12415.1 ID=prot_H-elongata_contig51517.12415.1|Name=mRNA_H-elongata_contig51517.12415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMG
REIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYL
LYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLK
SSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATA
RTHDLLNDGENATVLSLDASNVEATASLAANHFYGGTYTHT*
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mRNA from alignment at H-elongata_contig51517:288..3717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51517.12415.1 ID=mRNA_H-elongata_contig51517.12415.1|Name=mRNA_H-elongata_contig51517.12415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3430bp|location=Sequence derived from alignment at H-elongata_contig51517:288..3717- (Himanthalia elongata Himel1 dioecious)
CTGCGCGTCGTCAATAGCACTGGCCGACCTTTGACGGGATTCCAACGATC CAGAACCGTTACGCGGCCGGTTAGCGGCCAAGCGGCAGACTTGATGACCA CCTTGGGAGGCGCGAGGCCGGCAACATCACGACCATTGACTTCCATGGGA AGGTAAGGAACAAGTTTACCGGACGCGGGGGAGGTGATAACTGAGGCGAT TTGCACATAGCGCCACTCCTGCCGCCAACGACTTCAGCTATATTCTACTG GCGAGTAACGAAATATTATACTATGAGGGGTGTAAGCACATTATCTGAAA AGCAGCAGTCACGGGCACAACTGTGTCCAGGGCAGGGCATTACGGCGTGG CCCCCCTTTTTTGTTGTCAGTGGTCCTAGTCGGTCCTGTATGATATTTCC CAATTTTTTCTATGGCATGAATCAGCCTAGCAATGGCACCAAAGCCAATC AACTAGAGAAATAGACCTTGCCAAGGCCACCCGGACTCACCAGAAGCCTG CCAACACCGTGGAAGCCAATCATTTTTTTTAATGGTGTATGGACTGGCCC AGCATTTTCGCTGATCTTGGTAAAAAAGTGCAGAAAATAGTCGACATGTG CGCCCCTTGTGAAATGTGAATAGAAAGCACATATGTCGGCTCGTTTGGAT TGGTCTTGAGGATACGAGCCCTGTATCCGATGTGATGCACATAACAGCGA GCTGAAGATTCCTGGCAATTTTATCGGAACTTACGGCTGACGTCGTTCAC AGTGTGTAGTGGAAAAATCTAGACCGGAAAACGCTAATTGTTTTAGGAAG GTGGTTGAATTTCGACTTCAAGCTCCAAAGCCCCGCCCCTTCTTCCACTC GGAGGAGAGTCCCTCGCTCCCTGCCTACCTGTGGATCAAGTGATTGATTC CCTGTGAAAGTTAATACTGTATTTCATATTTTCTCCTAGAGCGTTTTCCC CTTGCAGAGTCATTTCCCCCCTTCGAATTTCATTCCTCGAACGGTTGGGA TGGAACCCACTTGGCCCATTTTCTTTTGGCGGGAAACAACGACATCGCCA GTACTGTACCAGTTGGCGCTTAATCGAACCGCTTGAAGTCGAATATTCCA GTACCAATTAGACTAATCAGCGCTGACTGATCTAGATTGTTAATGCCTAT CTCCAACAGGATGTCATCCAGAAGATGTTCAACAAAAGTTCTTTGTTTTC TTTCCCGAACGAACGTCTGCTGTTTCAATAGGTAACTTACATAAATATGT CGCTTTTTCCGAGTATTATGTACCATTATTAATTACCGTTTTATTTTATT TTATCGAGGGTATACAGTACGTTGTGCGTTTTTTCCTTACGGACGGTGTT TTTTTTATGTGGTGACCACGGTCTAGATTTAAGTGCTGAACCCGTCTCGC GAGACCAAATTCTCAGGCGCGAACGGGGACAGAGGAAAATTATTTTCCCT GTTCAGGTGACCACGAGCAGGAAGCAACCAAATCCGGTTGATCCTTCTGC TAAAAGTGAGACCAACAAAAACAACAACATTATGTGAGAATTCAATCAAA TTCAATCAAATAAACCAATCAGAGAGATTAGGCTTGGAACGGCGGGCATG GCTGCAGCGTCGGCCGCGATGGGGGACGATAGTGGAGCGCCATTCATCGA GAGCTCAAAGCTTGACCTGAGGCGGTACGCACGTCGACCCGCGCTGGCGA TGGCTCTAACCGACTACCTTTTGTACGTTGAAAGGAACCCGCGACGGGTG AGTGACGAGATACTTCAAGGGCGCATGTCCCAAAAGCTCATCCTCCTCTA GAATTACTTTCGAACTCAAGTACTGTATAGTTGTTTCGGAGGAGATCGAC CAGGAAACGGAAGGCCGAGATGGGGGGGGGATTCTCGTCCTGCTGGCCGA CTTATTATATTATGTGGATTCCCGTCTTACGTATAGCAGGCGTTGGACCT TACGGCAGAGGTGACGACCTTGAAAGAGTTTAACAACTGGTGGTGGAAGG CGAGGCTCGGCAAGTGCTACTATAAACTCGGTGTGTCCATGACTACTACA TACTTCAAGCAGCATTTGGATTAGAATACGCTAGTTCGTGCTGTGCGTTT GGTATTCATGACACGGCGTACCACGTCTCCAGAGAGACGCAACACGGCCG TAATCTTGTCCGTGGGGGAAACAAAGCAACATTAGGTCGATGATTTGATC AGCATCGTTGGCAGGTGTACTCCGACTCGCGATAGGCCGTTTAAAAGCCG GTATAATCATATGCATAAATACTAGGCATGCTAAGGGAAGCGGAGCGGCA GCTGAAATCTTCTTTAGTAGACCAGGACATGGTGTCCACTCATCTCGAGC TGGTAAAGGTGCGAAAACCTCGAACTTGCGATTTCAGATGATTACGTTGC TTCCTCAGAAGAATATGCGGTTCAGCAGCGCCCCCGGTCAATAACCACTT GGCGATATTTTTCGTTAGGATATTACACGGAAGGACAAAACCAATGCACA TAAAGGGAGCTGGCCAAGCCCCATTCCTCGCCCTGTGCTCTTATGCATCC CACGGAAGCCCACAGGTGTACACGAGACTGGATCTACCAAACACCGCTCT GGACGTACTCATGAAGGCTAGGTGATTTCCCCCGTCGTAAAATGAGGGAT GGAATAGGACAAATTAAGCTTGGCAGGGTAAACATCTAAATATCTATATA TCTTTATATATATTACTGAAGTATATTCTACCAGACAAGGAACATACACA AAGAAGACGAGCAGGGTATAGCATAAGAAACTCACACAGAAATATGATAG AAAGTACACACACCCGATACAGTAGTAGTAGCTTGAAGGCACTCAAGAAC AGGTAAGCCCCCCTGGCGAACCTAGCCTGTAATTGACCGGATTCCTACCG TAAAAGGTGACAAAACGATAGACTTACCATAACGCCCTTGAAATGAAAAT ATTTCGGCGCACAGCGAATCACATCCGAGGGAGTGTCGTATATTACTTGC CACTGCGAGGACCCACGATTTGCTCAACGATGGCGAAAACGCCACTGTCT TATACAAAAAGGCGAGACAGCAGCAACGTCGACTCCGAAACGACGAGTTC ATGACTGCAATAATAGCCGTCCAGTTGGATTTCTTGTTGACATTGTTCCA GTTTGTGTTGTTGTTAGACCGAGACATCGAAAGTTGGCAGAAATATCTGA TTGACTTCGAACAGCCTCACTGCATCTTCACCAATCGGTCTGCCACCCGC CGCTCAATGTGTGGAATATGTTGAGATTGGAAGCAACCACAAACTACTGA AGCAGTCGGCTAGTGAATAATTTCAATGGTCATTGTCATTCAGGTGCTTT CTCTTGATGCGTCCAACGTCGAAGCTACCGCAAGCCTGGCGGCCAATCAC TTCTACGGAGGCACGTACACACACACGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig51517:288..3717-

>mRNA_H-elongata_contig51517.12415.1 ID=mRNA_H-elongata_contig51517.12415.1|Name=mRNA_H-elongata_contig51517.12415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig51517:288..3717- (Himanthalia elongata Himel1 dioecious)
CTGCGCGTCGTCAATAGCACTGGCCGACCTTTGACGGGATTCCAACGATC
CAGAACCGTTACGCGGCCGGTTAGCGGCCAAGCGGCAGACTTGATGACCA
CCTTGGGAGGCGCGAGGCCGGCAACATCACGACCATTGACTTCCATGGGA
AGCTGCGCGTCGTCAATAGCACTGGCCGACCTTTGACGGGATTCCAACGA
TCCAGAACCGTTACGCGGCCGGTTAGCGGCCAAGCGGCAGACTTGATGAC
CACCTTGGGAGGCGCGAGGCCGGCAACATCACGACCATTGACTTCCATGG
GAAGAGAGATTAGGCTTGGAACGGCGGGCATGGCTGCAGCGTCGGCCGCG
ATGGGGGACGATAGTGGAGCGCCATTCATCGAGAGCTCAAAGCTTGACCT
GAGGCGGTACGCACGTCGACCCGCGCTGGCGATGGCTCTAACCGACTACC
TTTTGTACGTTGAAAGGAACCCGCGACGGAGAGATTAGGCTTGGAACGGC
GGGCATGGCTGCAGCGTCGGCCGCGATGGGGGACGATAGTGGAGCGCCAT
TCATCGAGAGCTCAAAGCTTGACCTGAGGCGGTACGCACGTCGACCCGCG
CTGGCGATGGCTCTAACCGACTACCTTTTGTACGTTGAAAGGAACCCGCG
ACGGGCGTTGGACCTTACGGCAGAGGTGACGACCTTGAAAGAGTTTAACA
ACTGGTGGTGGAAGGCGAGGCTCGGCAAGTGCTACTATAAACTCGGCGTT
GGACCTTACGGCAGAGGTGACGACCTTGAAAGAGTTTAACAACTGGTGGT
GGAAGGCGAGGCTCGGCAAGTGCTACTATAAACTCGGCATGCTAAGGGAA
GCGGAGCGGCAGCTGAAATCTTCTTTAGTAGACCAGGACATGGTGTCCAC
TCATCTCGAGCTGGTAAAGGCATGCTAAGGGAAGCGGAGCGGCAGCTGAA
ATCTTCTTTAGTAGACCAGGACATGGTGTCCACTCATCTCGAGCTGGTAA
AGGTGTACACGAGACTGGATCTACCAAACACCGCTCTGGACGTACTCATG
AAGGCTAGGTGTACACGAGACTGGATCTACCAAACACCGCTCTGGACGTA
CTCATGAAGGCTAGCGAATCACATCCGAGGGAGTGTCGTATATTACTTGC
CACTGCGAGGACCCACGATTTGCTCAACGATGGCGAAAACGCCACTCGAA
TCACATCCGAGGGAGTGTCGTATATTACTTGCCACTGCGAGGACCCACGA
TTTGCTCAACGATGGCGAAAACGCCACTGTGCTTTCTCTTGATGCGTCCA
ACGTCGAAGCTACCGCAAGCCTGGCGGCCAATCACTTCTACGGAGGCACG
TACACACACACGTAGGTGCTTTCTCTTGATGCGTCCAACGTCGAAGCTAC
CGCAAGCCTGGCGGCCAATCACTTCTACGGAGGCACGTACACACACACGT
AG
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