mRNA_H-elongata_contig5128.12385.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig5128.12385.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 1.660e-7 Identity = 33/43 (76.74%), Postives = 34/43 (79.07%), Query Frame = 1
Query: 1 QGKYADAEPLYERSQTIREMALGFEHPDVAQSLHYRAGFLFQQ 129
QGKY DAEPL ERSQTIRE LG EHPDVAQSL+ RAG L Q
Sbjct: 498 QGKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLLEAQ 540
BLAST of mRNA_H-elongata_contig5128.12385.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 2.640e-7 Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 1
Query: 1 QGKYADAEPLYERSQTIREMALGFEHPDVAQSLHYRAGFLFQQ 129
QGKY +AEPLYERSQ I+E LG EHPDVA SL+ R L Q
Sbjct: 18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
BLAST of mRNA_H-elongata_contig5128.12385.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 9.950e-6 Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 1
Query: 4 GKYADAEPLYERSQTIREMALGFEHPDVAQSLHYRAG 114
GKYADAEPL ERS IRE LG EHPDVAQSL+ RAG
Sbjct: 404 GKYADAEPLCERSPAIREKVLGPEHPDVAQSLNNRAG 440
BLAST of mRNA_H-elongata_contig5128.12385.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 1.190e-5 Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 1
Query: 1 QGKYADAEPLYERSQTIREMALGFEHPDVAQSLHYRAGFLFQQ 129
QGKY +AEPLYERSQ IRE LG EHP VA SL+ RA L +Q
Sbjct: 14 QGKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLLCKQ 56
BLAST of mRNA_H-elongata_contig5128.12385.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 1.530e-5 Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1
Query: 1 QGKYADAEPLYERSQTIREMALGFEHPDVAQSLHYRAGFLFQQ 129
QGKYA+AEPLYER Q I E ALG EHP+VA +L+ RAG L Q
Sbjct: 30 QGKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLLEDQ 72
BLAST of mRNA_H-elongata_contig5128.12385.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 2.560e-5 Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1
Query: 1 QGKYADAEPLYERSQTIREMALGFEHPDVAQSLHYRAGFLFQQ 129
QGKYA+AEPLYERSQ I+E LG EHPDV SL+ RA L +Q
Sbjct: 660 QGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQ 702
BLAST of mRNA_H-elongata_contig5128.12385.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 2.870e-5 Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 1
Query: 1 QGKYADAEPLYERSQTIREMALGFEHPDVAQSLHYR 108
QGKY DAE LYERS IRE LG EHPDVAQSL+ R
Sbjct: 16 QGKYDDAEQLYERSLAIREKVLGPEHPDVAQSLNNR 51
BLAST of mRNA_H-elongata_contig5128.12385.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 55.5 bits (132), Expect = 6.990e-5 Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query: 1 QGKYADAEPLYERSQTIREMALGFEHPDVAQSLHYRAGFL 120
QGKYA+AEPLYERS I+E LG EHPDVA SL RA L
Sbjct: 693 QGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732
BLAST of mRNA_H-elongata_contig5128.12385.1 vs. uniprot
Match: A0A6H5L226_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L226_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 7.360e-5 Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query: 1 QGKYADAEPLYERSQTIREMALGFEHPDVAQSLHYRAGFL 120
QGK+A+AEPLYERSQ IRE LG +HPDVA+ L+ RA L
Sbjct: 366 QGKHAEAEPLYERSQAIREKVLGPKHPDVAEVLNNRATLL 405 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5128.12385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5128.12385.1 >prot_H-elongata_contig5128.12385.1 ID=prot_H-elongata_contig5128.12385.1|Name=mRNA_H-elongata_contig5128.12385.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=296bp QGKYADAEPLYERSQTIREMALGFEHPDVAQSLHYRAGFLFQQGRRSEAEback to top mRNA from alignment at H-elongata_contig5128:6844..11099+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5128.12385.1 ID=mRNA_H-elongata_contig5128.12385.1|Name=mRNA_H-elongata_contig5128.12385.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4256bp|location=Sequence derived from alignment at H-elongata_contig5128:6844..11099+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5128:6844..11099+ >mRNA_H-elongata_contig5128.12385.1 ID=mRNA_H-elongata_contig5128.12385.1|Name=mRNA_H-elongata_contig5128.12385.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1776bp|location=Sequence derived from alignment at H-elongata_contig5128:6844..11099+ (Himanthalia elongata Himel1 dioecious)back to top |