mRNA_H-elongata_contig5106.12367.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5106.12367.1 vs. uniprot
Match: D8LPQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPQ5_ECTSI) HSP 1 Score: 1264 bits (3271), Expect = 0.000e+0 Identity = 1013/2353 (43.05%), Postives = 1280/2353 (54.40%), Query Frame = 1
Query: 1 QVCVMCRTDLRRRYQQDIQRPSSSAVQPSEVSEFDESAVEET----------------RGTMRASGGMGLSKASREAHRATRQAGRTGGSQSWLACLRRLHAAVPPEWVSTAELVLEQTLHHTPDLAESLLDAIQDTN------GDDELANNAGSPRGSCSLRLGPG---------------DTATTAIDDLGLLLLLLREASPLRACSLPLLPDSMDRGRRAEDGVRNLLLVAARRGLGGFGDSGPRIACANRQASGLRGRENALASVKVLLQGVLCSRRVAMVRDSRGGATSGGYSIYGSSGARGGWV--GAECSEVASERASQLLELALWWL---DGGAGSGCNSMTNSGPVGGGCRGAVELTAEDLASETISAVFDAVAEARSRLLRALLSGMFDQSHGEATCAPSYLRAWEALMAQEMQQQCRRLTPFSQVISDALGRLTLLPRGRARRVVESMLPLADACPTQASALISLCRKCAAQGENKGSLLALHAVACILVWNARRLRKGGCGGFLDQDGMQEDLVAIFRRALEGGLQTATRVDTLHLLASKVAVPAPDEMLRVASPTMVENGRLI------LPP----RGMLDAQSPPAVDFSALRGLREPLTTRLFRFFAHKDELLDGQSSYGSINSIIEGGGNRRHGGPGDDGGDCAGGQHQRKGKQKAACRRQRVGDFRLVPLRLLEDGGAPTGPGLWNAQTVRSRG----------GVVPRDAIGHLLKCCWALVSQSEDFFDVDPSESAYDRVMAGPGKRAETEAIARVILGATVGGRS---GQDRG-KTAGGGIGVRTREGDALVAVVEFMEGGGGMETILLDSPSAARASASDGGCDDQDHRELP-PPACHPGLVGSLPALAVVVTLAEALADCLLSGVSCPPAMPFLRPTPRYAMTSGATFGGR-VASGASGGN--------LVLWAVMDVFTLLAAAARVAEGLADSAGFSFAGGQPSKARSPENLSDIIVSLPAETLGLSRGPDVDAGAAGVTAGDDNELEDSAGGLTIRKGFCGNPGGGTGGAVQL--QCPLFSASSALVLAKEFLLWAATERG-SPAKAVAEGWDAGVGVWLGLAHSVRALAVALEVQKVRGGRGKRRGDGSFVVGRQEVPEGSPSSEVIALAVFELRVIIGTPSAALIVLNPSS-VPKTNSGGVAMYADSSAPA----TARSF-----------SRRPPPGTMVTGFLKRMSERWKTHLNWGIHGAAPPRRTSARLWGADGRGRRESGGYGGDSASQNLRDEAEELFFVLWKELLRAERLALSTLLVGTGAGVTRR-WATRAALLSAQRRSLVAKEEPYLTAGPDESPRSGRDASVGRPKLSDSGVPGTEPEAGSGPARVVSSPKRRSVRRGRRQASTGSNSVAKVEAASPSRATSKEEENHPDSGNRYRNVDIESRRRRKEEREWVAQAASCKSGEG-DEWGALGRLCRLAAVEMREGLENGLSVKLTQAYLDLVELLGNAALEHRHTIMRSPTHIAVADLAGALTSTSSKTSPVRAKTASSAAAHIQGFVEGADDNRAPGGEEDAGGILLSIVTFHCIDQVTLLKRLIRGAVRFDGVGAAWRHINHPV----SSAATVAELEAREKYLSRENPGSIDVVSYKD-------AAASAAGRV----TVRSSHRTIERCSQLLVHCVRWMQSRNNGSNKRGRLSSTNAGPDAEKGVRESYEKKAARNGGHDSGGTDVDSDDSGDEANDASGRRGSADTSNHYSFRPDEVRFATSRECYAAMHVTLVEIEALLMAAGSP--GGGASGPDSNATQGSSSYDADLANIVVTVSKGLREFFTPIEAAVARRPPAKRKRNEIAETTTPVPESALLATVTVASPGHGRKKHGAGGISVASGDKRKKVSQVSADLFPEHMKLLLMRVLERIYLVGRAYAVSAASVLSKSSSADVEATVTAAPLWMPSPPIPXXXXXXXXXXXXXKTRAAENV-----GKPGDQAGGGPIRC-RKAGAGDDNKRGVQVTTARTSAVDSXXXXXXXXXXHSPPRPTASSSLVNGKKRLRRGRNSP--RGVTDSLENPRSKMATTSAKNAVVLDAQQDVHLLLTTLLPTVAFSSGDSLRLMAEARAWAETRRARTQGAVEDPCRKRASTLLFKMDRCELGIGRAAQRARQFLDSFGNHVDDNHL------GGVKSA-KKRARGAGSGGGLANDGCGDLERVKEVT-------KCHNFVERALLLLLSGADTLTAWRRESSAHENAVGERRRKNDGSQGGKRQRHRRSGAGGTEVERIIPAEDDMGDEEGGEAEGRRSLGEGFRRVALGGRRKSGRCRIRSRNAWIDGWLAEGGEEGGDREDAFVDLEDFIE 6651
QVCV+C TD RR Y+ D + SS EVS D + T R MR G G+ KA R TR + R GG W++CLR+L+AAVPPEWVST ELVLEQTLH P +AESLLDAIQDT+ G+ + G+ GS T T+ DL LL+LLLREASPLRACSLPLLP +DRGRRAE+GVR+LLL AAR G G R + N Q + RGRE AL S + LL+ VLCS GG G E S V SERASQLLELAL WL DGG+G + ++ VG EL +D+ASETISAVFDAV EAR RLLRALLSG++DQS G A CA +Y+RAWEALMAQE ++CRRL P SQ +SDALG+LTLLPRGRARRVVESMLPLAD CPTQASA+ISLCRKC+ QGE+KG LL LHAV CIL WNARR G GG LDQ+GMQEDLV +FRRA EGGLQT R D LHLLA+K+A + T +L+ +P R + PPA+D +AL GLR L+ RLFRFFAHKDE+L S +S +GGG+ GGP GG A +RKGK KA RR+R G F+LVPLRLLE+ GA G + ++ R +G GVVPRDAIG LLKCCWALV P + A+ +M P KRAE EAIAR++LGA RS G++RG + + G + V TREG+ALVAVVEF++GGG MET+ + +PS + DD P PPACHPG+V L L VVVTLAEALADCLL+G+SCP A+ F R R ++ G V G GG LVLWA+ DVFTLLAAA RVA+G+A G QP + R+PE LS+II SLPAETLGLSRG +++A GV GDD++ +GG +G Q L SA+SALV +EFL WA E+G SPA VAEGWD G+GVWLGL HSV+ L+ AL+ + G R G G VG P +E IALAVF+LR ++GTPSAA+ V++PS+ KT A +++P+ TAR SRRPPPG M+TGFL +MS RWKT L WG+ APPRRTS G GG + + ++ EAE+LFF L ELLR+ERL LS LLVG A + +R W RAAL SA R L E + + P S S + PE+GSGPAR +S R VR R+++T +A S + AT E+ R N+ + RR V + GEG D+W LG LCRLAA EMREGLE GLSVKL+ AYLDL+ELLG+AALEHR R+P A A A +TS + +A G + A N G +EDAGG+LLSIVT H + Q L RL+RGAVR DG+G + +HP ++AA++AEL AR++ +S V ++ D A + A RV V S ++ER ++LLVHCVRW+++R+ NKRGR + + D ES E++ D++ + + S R + YS P++V+FA+SREC+AAM LVE E L + G GGG G +S +LA+++ TV+ LREFFTP G S +LLLMRVLER++LVG+ SA++ L+K SS T TA + + + P XXXXXXXXXXXXXK R ++ GKPGDQAGG P R K G + +R A+ S RP S S+ + R +G R +D+ S+++ ++ + + + +L +LP VA +SGD LRLM AR WAE R +++ +DPCRKRAST+LFK++RCEL IG AA + RQFL+ F + ++ + GGV+ A +KRAR GG + G GD + K++ C +E AL LLL+GADT+ AWRR+S+A E + R G + G+ +R R+ G G AE + GDEE EA GR + A G RR+S R R+RSRN IDGWL EGGEEGG+R+DAFVDLEDFIE
Sbjct: 432 QVCVLCDTDDRRNYEHDTRH--SSPPLREEVSGCDVAPGAATSHEPQERLLPKNGHSERTEMR-DGVDGVRKARRGEQ--TRVSSRGGG---WISCLRQLYAAVPPEWVSTVELVLEQTLHQMPGVAESLLDAIQDTSSSSVNTGEADYGVMTGAGLGSSQAEXXXXXXXXXXXXXXXXXXXSTPTSISHDLALLILLLREASPLRACSLPLLPVGVDRGRRAEEGVRSLLLHAARSGFDGRAAVISRSS-GNNQMNEYRGREGALDSTRALLRAVLCSEPGCKGSGXXXXXXXXXXXXXXXXXXSGGVFRNGGESSGVVSERASQLLELALRWLEEGDGGSGGDGSVAFDTEGVG------TELNIQDIASETISAVFDAVVEARPRLLRALLSGIYDQSQGGAACAWNYMRAWEALMAQETGRECRRLVPHSQCVSDALGQLTLLPRGRARRVVESMLPLADVCPTQASAMISLCRKCSVQGESKGRLLTLHAVTCILAWNARRGHTGRNGGCLDQEGMQEDLVGMFRRAFEGGLQTVARADALHLLATKLATSVAGA---ITQGTQYNRAQLLSAMPCQMPQQSHARATIHVDPPPAIDRTALNGLRAFLSMRLFRFFAHKDEVL-------SADSNADGGGDNS-GGPAPSGGYDADSLSRRKGKHKA--RRRRGGRFQLVPLRLLEERGASGGGHSFGGKSSRGKGPGIVRNGRGRGVVPRDAIGQLLKCCWALVPAGGPTGTDVPDDGAHGTIMPVPEKRAEAEAIARMLLGAGSRRRSEGGGRERGGRPSVGRVSVDTREGEALVAVVEFLQGGGTMETLRMVTPSNQQTPDQQEADDDVIEPPAPAPPACHPGVVSPLTTLGVVVTLAEALADCLLTGISCPRAIHFSRKASRCEVSRVEPADGHHVGDGGDGGPTSGKPEAPLVLWAIADVFTLLAAATRVADGIAAPLGGLSK--QP-QTRAPEGLSEIISSLPAETLGLSRGSELNATVVGVEEGDDSD----SGGAMGERGXXXXXXXXXXXXXXASGQSSLLSATSALVFVREFLGWAEKEKGKSPAALVAEGWDGGIGVWLGLVHSVQTLSRALKTTR---GNCSRDGAGGVSVGGAATQNSDPCAEAIALAVFQLRTVVGTPSAAVSVVDPSAEASKTTVSSDERSAGAASPSVGHGTARGTHETDSPIMHQTSRRPPPGKMITGFLTKMSMRWKTALPWGLPSVAPPRRTSXXXXXXXXXXXXXXXGCGGHAVAGGVKAEAEDLFFALQAELLRSERLVLSILLVGPNASLAQRGWTMRAALASACPRQLAENVEEWRSPPPGTSAASSAATKCAPDRPRAFSRREEPPESGSGPARGAASSNGRVVRATLRKSAT----LAGGRNGSDAAAT---EQEFGGKLGRASNMGVGGRRG------LVGAKGVREGGEGGDKWNGLGGLCRLAAAEMREGLETGLSVKLSHAYLDLIELLGSAALEHRSCARRTPKPNAAAGPA--------ETSAADRSSEQGSAGACWGQADDAM-NTGDGNKEDAGGVLLSIVTCHTVSQSKLFNRLVRGAVRLDGIGIS----HHPQPPRRTAAASLAELRARDREISC-------VANHPDGGQGGGGAGCNGANRVEGLRAVAVSPPSLERSTRLLVHCVRWIRARH--GNKRGRTAILLSEEDGS----ESSEEEGVXXXXXXXXXXLPDAEHASGKGKGLSDLRARDGRQSRYSLCPEKVKFASSRECFAAMRTALVECETSLSSVGGVDVGGG----------GGASSTGNLADVLATVAFCLREFFTP------------------------------------------------GSTST---------------------RLLLMRVLERVFLVGKGALASASATLAKPSS-----TATATVVAVRAAPXXXXXXXXXXXXXXXKRRRQQHAATVENGKPGDQAGGAPCRTPAKCGGTNSTERSGGSRAAKDGDSGSGR------------RPPQSRSVSSSSGRQGKGAXXXXXRAGSDAAAAAHSELSRLGQESGMTKAPEGALDAVLAPVLPAVALASGDCLRLMLAARTWAEALRLKSRRGGDDPCRKRASTMLFKIERCELEIGTAAHKTRQFLEHFQDGEKNSAVKAETRSGGVRGATRKRAR----GGCDKDGGGGDPAKAKKLEPGGSTTISCDENLESALRLLLAGADTVAAWRRDSAAKEKSRAAR--PTHGGKRGQARRERQQGLG-------PGAEHEEGDEE--EAGGRSNSVRHRFTGASGKRRRSRRARVRSRNVVIDGWLEEGGEEGGNRDDAFVDLEDFIE 2596
BLAST of mRNA_H-elongata_contig5106.12367.1 vs. uniprot
Match: A0A835YTT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT1_9STRA) HSP 1 Score: 143 bits (361), Expect = 3.370e-30 Identity = 215/847 (25.38%), Postives = 295/847 (34.83%), Query Frame = 1
Query: 229 WLACLRRLHAAVPPEWVSTAELVLEQTLHH-TPDLAESLLDAIQDTNGDDELANNAGSPRGSCSLRLGPGDTATT-----------------AIDDLGLLLLLLREASPLRACSLPLLPDSMDRGRRAEDG-VRNLLLVAARRGLGGFGDSGPRIACANRQASGLRGRENALASVKVLLQGVLCSRRVAMVRDSRGGATSGGYSIYGSSGARGGWVGAECSEVASERASQLLELALWWLD-GGAGSGCNSMTNSGPVGGGCRGAVELTAEDLASETISAVFDAVAEARSRLLRALLSGMFDQSHGEATCAPSYLRAWEALMAQEMQQQCRRLTPFSQVISDALGRLTLLPRGR----------------ARRVVESMLPLADACPTQASALISLCRKCAAQGENKGSLLALHAVACILVWNARRLRKGG--CGGF------------------------------------------LDQDGMQEDLVAIFRRALEGGLQTATRVDTLHLLASKVAVPAPDEMLRVASPTMVENGRLILPPRGMLDAQSPPAVDFSALRGLREPLTTRLFRFFAHKDELLDGQSSYGSINSIIEGGGNRRHGGPGDDGGDCAGGQHQRKGKQKAACRRQRVGDFRLVPLRLLEDGGAPTGPGLWNAQTVRSRGGVVPR----DAIGHLLKCCWALVSQSEDFFDVDPSESAYDRVMAGPGKRAETEAIARVILGATVGGRSGQDRGKTAGGGIGV------RTREGDALVAVVEFMEGGGGMETILLDSPSAARASASDG--------------GCDDQDHRELPPPACHPGLVGSLPALAVVVTLAEALADCLLSG 2457
WL L ++ A PP ++T ELVLEQ LH + A +LL A+ D D A LLLLL R A+PLR C+LPLLP ++ G A D +R+LL AA LG G S SG+ S+RA+QL + AL WLD G G G R VE + VF V ++R +LR LL + D++ A YL AWEAL+A+E QQ+C L P + ++ DALG LTL P ARRV+++ PLA A A+A++ L RKC AQ + +G LLALHA+ L GG CG L+ D++ + R L+GGL + L+ + A P A + + RL R FA QSS KGK++ A R G +LVPLRLLE+ AP G R RG V+ R + +GHLL C WAL Q+ + D + + +R ++ G A+ +AR ++G G S +R AG + + R A +A+V ++ GG + + P + A++ G LP P C VG+ AL V AE L CLL G
Sbjct: 397 WLQALIAVYCAAPPPALATLELVLEQALHQDSSGSARALLRAVTDDGSDGGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPICHAWQRANLLLLLRRGATPLRECALPLLPPALAAGGAAADAALRDLLFSAAAASLGSGGGS-----------SGVEXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------SDRAAQLFDAALKWLDVSGGGXXXXXXXXXXXXNGVARTVVE--------SVVLQVFALVPDSRPHVLRRLLGALLDRTRAAAV-REGYLGAWEALLAREAQQRCAALQPHAALVGDALGALTLQPPQATRSLPMTPPSTSILHVARRVLDACAPLAHASAPLAAAVVGLARKCLAQADARGRLLALHALTAALGTPPEAWGGGGGPCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACVTALNNPERLHDIIELLRWGLDGGLPCGMKAAAYQRLSVRRAAP-------------------------------------HAAAAALDVIQRRLLRLFARAPP---PQSS---------------------------------KGKKRGAMER---GALQLVPLRLLEEW-APREGGE------RQRGHVLARCCAREPLGHLLGCAWALEVQAGGYAAGDAAAAGGNRGVSAQGGLADALLLARAVVG---GSASAAERAGGAGDELQLGEAGRQRAAHVRAALALVRYLRGGALPHRVDDEDPDGSAEDAAEAAVQGSAELLGGGSFGARGGGAAALPLPQCDARAVGTQQALGVAAMAAEGLLSCLLLG 1103 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5106.12367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5106.12367.1 >prot_H-elongata_contig5106.12367.1 ID=prot_H-elongata_contig5106.12367.1|Name=mRNA_H-elongata_contig5106.12367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=2215bp MCRTDLRRRYQQDIQRPSSSAVQPSEVSEFDESAVEETRGTMRASGGMGLback to top mRNA from alignment at H-elongata_contig5106:133..11432+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5106.12367.1 ID=mRNA_H-elongata_contig5106.12367.1|Name=mRNA_H-elongata_contig5106.12367.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=11300bp|location=Sequence derived from alignment at H-elongata_contig5106:133..11432+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5106:133..11432+ >mRNA_H-elongata_contig5106.12367.1 ID=mRNA_H-elongata_contig5106.12367.1|Name=mRNA_H-elongata_contig5106.12367.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=13290bp|location=Sequence derived from alignment at H-elongata_contig5106:133..11432+ (Himanthalia elongata Himel1 dioecious)back to top |