mRNA_H-elongata_contig50794.12333.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50794.12333.1
Unique NamemRNA_H-elongata_contig50794.12333.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: D8LR95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR95_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 6.320e-126
Identity = 228/406 (56.16%), Postives = 258/406 (63.55%), Query Frame = 1
Query:    1 ISRLYERAFGYRLTALEALWAGFRDFVERTSWDNLTPP---------CTPDAAGKVPQTLCDAMRVPNGGSTSSGGIGTGEEA-----AASEGSTKAARKERLVKILEDKRKVSLRGRERRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQA-------CGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGS-DVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSW-SGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAAQPQVMCCG 1149
            ++RLYERAFG+RL  LE LW GF++FV+   W  L P                                 +         E A     +A EGST A +K  LV+ L +KRK SLRGR+RRESFERRI+RPHFHVKPLDDAQL AWS++LDFE +Q A                                           RGS DVERLFERCLVPCASY WLWERYALWKESV G+E+ALEVAERACSPFL+WRPEALFF+AELLERV R ++AR VY+ VLSEVAPGLVE ACKLACFERRCG+R+AA  AYR LLPPPLG               S WEETTETTRPYLYMQLARFQ R+LG+  +AR TFRAAV D+P SRELWLAFLEFEAAQPQ +  G
Sbjct:  217 VTRLYERAFGHRLKDLEVLWIGFKEFVDGLPWGKLRPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDDAVDDDDFEVAEAALVVASSAEEGSTDADKKAMLVRTLGEKRKASLRGRQRRESFERRISRPHFHVKPLDDAQLLAWSQYLDFEQAQAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGSGDVERLFERCLVPCASYSWLWERYALWKESVRGLESALEVAERACSPFLRWRPEALFFKAELLERVGRKEEARNVYQHVLSEVAPGLVEGACKLACFERRCGNREAASAAYRSLLPPPLGLPAGXXXXXXXXXXXSHWEETTETTRPYLYMQLARFQQRVLGNPGSARATFRAAVGDIPGSRELWLAFLEFEAAQPQALHAG 622          
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A7S2V484_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V484_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.750e-39
Identity = 102/283 (36.04%), Postives = 133/283 (47.00%), Query Frame = 1
Query:  319 RESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKA---YRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTR----------PYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAAQ 1128
            R+ FE +I RP++HVKPLD+ QL  W E+LD+  S                                C  AA       ERL+ERC+VPCA+Y   W RYA WKE+  G E + EVA R CS FL++RP A  F A+LLE      +AR VY      V  GLVE A +   FERR G+  A +KA   Y  LL        + +    G             +          P++Y+  AR Q +IL D   AR T+  AV   P ++E+WLA L+FE  Q
Sbjct:    1 RKRFEDKIKRPYYHVKPLDETQLQNWREYLDYSESH-------------------------------CEAAA------TERLYERCVVPCANYAEFWMRYANWKETALGAEQSEEVAHRCCSVFLRYRPAAHLFYADLLEAHGHVQEARQVYENASRSVGVGLVELALRWVNFERRQGE--AGEKALPIYDQLLEQLKEQQQAVDGKAEGXXXXXXXXXXXXXKDKPAPDSAVLPFVYLHKARLQDKILKDIEGARATYNVAVETYPKNKEIWLALLQFEFGQ 244          
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A835Z852_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z852_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.390e-28
Identity = 82/192 (42.71%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  316 RRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLL 891
            RR   E R+ RP FHVKPLD  QL+AW   LD E                        E + G  R             V   +ERCLV CA+Y   W RYALW     G  AA  VA RAC+  L+ RP+     AELLE     D AR +Y RVLS++APGL+EAA +LA  ERR GD  AA  AYR  L
Sbjct:  226 RRAPLEARLVRPFFHVKPLDATQLAAWRALLDLE------------------------EAASGAAR-------------VAAAYERCLVACANYAEFWARYALWTARAVGAAAACNVAGRACA-VLRRRPDVHLLCAELLEAAGYGDAARGMYARVLSDLAPGLLEAAVRLAALERRRGDAAAAVAAYRCAL 379          
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A8J2SLJ5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SLJ5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.080e-28
Identity = 93/269 (34.57%), Postives = 121/269 (44.98%), Query Frame = 1
Query:  319 RESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAA 1125
            R  +ERRI RP+FH KPLD+ QL AW  +LD+E                        +N  G +              V  L+ERCLV C +Y   W RYA +  S    + A+ V +R  S FL+  P+ L  +A LLE     D AR V+  +    APGL+EA    A FERRCG R+     Y   LP            +  GS           R  +   LARFQ  +L DA AAR T   A+ + P  R+LW+A+   EAA
Sbjct:  236 RSPYERRIRRPYFHAKPLDEDQLRAWRAYLDWEE-----------------------DNGDGER--------------VRHLYERCLVACCAYPEFWCRYASYL-SPSSSDEAVAVLDRGLS-FLKHAPDLLLLKAALLEATGDVDGARLVHESLTEHSAPGLLEAVLAHARFERRCGSREDVLAIYNGALP-----------RLDAGS---------DARGLVQAALARFQLTVLRDANAARVTLENAIREAPQCRDLWVAYYALEAA 445          
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: M4BN98_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN98_HYAAE)

HSP 1 Score: 123 bits (308), Expect = 5.230e-27
Identity = 91/288 (31.60%), Postives = 132/288 (45.83%), Query Frame = 1
Query:  262 RLVKILEDKRKVSLRGRERRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYM--QLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFE 1119
            ++V ++E  +  ++    RR++FE  I R +FHV P+ ++ +  W  +L+FE +      SG D                    +RC           E L+ERCL+ CA+Y  +W RY  W E V G E+A  V +RA + FL++R       A  LE  N+  +A+ VY +VLS+VAP LVE   +   FERR GD +AA   +                        G +        Y Y+    A F H+ +GDAA+AR  F  AV     S  LWL F+ FE
Sbjct:  256 KIVNVMEAVKNKTMEDIYRRQAFEAGIDRSYFHVTPVAESAMKNWHSYLEFEEA------SGND--------------------ARC-----------ETLYERCLISCANYEEIWLRYVQWNEKVLGFESADAVFQRAVTIFLKYRASTYLEYASFLEAHNKLQEAQDVYMKVLSDVAPKLVEGFLRYCNFERRRGDVEAAKTWFE----------------------RGMDAVENDAGAYAYVATSYATFLHKSVGDAASARAVFDRAVQKHDGSVLLWLNFIHFE 484          
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: C1E8A9_MICCC (TPR_MalT domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E8A9_MICCC)

HSP 1 Score: 120 bits (301), Expect = 4.360e-26
Identity = 123/403 (30.52%), Postives = 162/403 (40.20%), Query Frame = 1
Query:    1 ISRLYERAFGYRLTALEALWAGFRDFVERTSWDNLTPP----CTPDAAGKVPQTLCDAMRVPNGGSTSSGGIGTGEEAAASEG------------------STKAA-----RKERLVKILEDKRKVSLRGRERRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESV--WGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTF-RAAVADVPSSRELWLAFLEFE 1119
            ++RLY R     L  L+  WAGF  FV   S   + PP        A G +P     A      G+T++  + T  +AAAS G                  +T+AA     R  R   +  +  + +L  R  RE FE+R+ RP+FHVKPLDDAQL+ W  +LD E                      AG+                  S V RL+ERCLVPCASY   W RYA W+ S    GV AA    +RA + F +   E  F  A   E V   D ARA Y  V  +VAPGL+    + A  ERR G    A + Y   +        +   A                   L  + A   H   GD   AR  + RAA     ++  +W  +L FE
Sbjct:  178 VTRLYGRVLRVPLKELDKYWAGFETFVTNRSPSAVIPPEELRAIDAAVGGIPPKGATAP-----GATAASRLAT--DAAASNGVDGGDXXXXXXXXXXXXXATEAAGGSDPRLLRFRDVRFETYRATLAVRATREPFEQRVKRPYFHVKPLDDAQLANWDTYLDNE--------------------ERAGDV-----------------SSVTRLYERCLVPCASYSRFWLRYARWQASDAGQGVAAARAALQRAANVFCKRDVEVHFALARFEEAVGDVDAARAAYAHVADDVAPGLLRCVVERANLERRAGALDVAKETYERAMQVEKSREGAGSKAYG----------------VLACKYAAMLHEACGDVEGARKVYERAAEVGDGANALVWDGWLNFE 520          
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A383WHJ6_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WHJ6_TETOB)

HSP 1 Score: 115 bits (288), Expect = 2.870e-24
Identity = 90/271 (33.21%), Postives = 116/271 (42.80%), Query Frame = 1
Query:  319 RESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAAQP 1131
            R+ +E  I RP++HVKPLD AQL  W+ +LD++ +Q   G        LT                              RL+ERC VPCASY   W+RY LW E+    EAA  V  RA +   + RP+   F A   E     D ARA YRRVLSE+APGL+E     A FERR G  Q A                         S +G          +L +  A F  ++ GD   AR   +  +A  P+ + LW   L FE   P
Sbjct:  411 RQQYEAAIRRPYWHVKPLDAAQLRNWAAYLDWQEAQGELG--------LTV-----------------------------RLYERCCVPCASYPEFWQRYVLWCEAN-QPEAAAAVLARATAVHCKRRPDLAVFAARFHEAAGDADAARAAYRRVLSELAPGLLEVVLAAANFERRMG--QPAXXXXXXXXXXXXXXXXXXXXXXXXXSVAG----------FLSLLYANFLRQVYGDVERARQVLQEGLAASPACQALWEGALFFEETLP 631          
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A5J4XXZ2_9CHLO (Pre-mRNA-processing factor 39-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XXZ2_9CHLO)

HSP 1 Score: 111 bits (278), Expect = 6.040e-23
Identity = 90/273 (32.97%), Postives = 115/273 (42.12%), Query Frame = 1
Query:  316 RRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVA-ERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAAQP 1131
            RR+ FE  I RP+FHVKPLD AQL  WS +LD+   ++  G                                      + RL+ERCLV CASY  LW RY  W+E     +AA +VA ERA S   + RPE   F A   ER    D ARA++R V   +AP L+  A + A FERR G + AA   Y   L    G  ++  V +                 Y+      FQ     D   AR  + AA+     S  LW   + FE   P
Sbjct:  618 RRKPFEDAIKRPYFHVKPLDSAQLQNWSRYLDYIEEKKDIG-------------------------------------MIIRLYERCLVACASYPDLWMRYVRWQEI--SSKAAAQVALERATSVHCKRRPEMQLFAAHFHERHGNADTARALFRLVTERLAPTLIPGAVQHANFERRQGSKAAACAVYDKFLEREAGKDSATYVFVV--------------IQYINALQCGFQ-----DTQKAREVYNAALEKAQDSIMLWEGIIHFEETLP 832          
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A8J9RZN4_9CHLO (Probable pre-mRNA-processing factor 39 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RZN4_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 1.880e-21
Identity = 85/268 (31.72%), Postives = 117/268 (43.66%), Query Frame = 1
Query:  316 RRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFE 1119
            RR++FE  I RP+FHVKPLD AQL AWS +LD+                    A   G+N++                    L+ERCLV CA Y   W RY  + E     +AA E   RA     + +PE     A   ER      AR  Y  V+S++APGL+ A      FERR G++ AA K Y              + A+A  +  G   ++E T  +L +  A F  +   D  AAR+ + +A+   P S  LW   +  E
Sbjct:  404 RRKAFEDAIKRPYFHVKPLDGAQLLAWSRYLDY--------------------AEERGDNTV-----------------TTHLYERCLVACAQYHDFWARYIRFLEPE-RPDAAKEALRRAQHIHCKAQPELQLLAARFHERHGDLAAARTAYELVVSKLAPGLISAVLAFVNFERRQGNKAAACKIY--------------DDAVAAAADKG--SSSERTYAFLVVSYAHFLVQNFKDVDAARSLYASALQQAPGSLSLWEGAIHLE 617          
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A7J8M6P2_9ROSI (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8M6P2_9ROSI)

HSP 1 Score: 102 bits (254), Expect = 1.940e-20
Identity = 88/301 (29.24%), Postives = 124/301 (41.20%), Query Frame = 1
Query:  229 SEGSTKAARKERLVKILEDKRKVSLRGRERRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAAQP 1131
            S GST A   E+ V I E+  K +     +   FE  I RP+FH +PL+ A+L  W  +LDF  S                      E  + +               V +L+ERCL+ CASY   W RY L  E+   ++ A     RA   F++ +PE   F A   E+      ARA Y+ V +E++PG +EA  K A  ERR G  + A   Y   +    G   S                   T P +Y Q +RF + + G+A  AR     A+  V  S+    A + FE   P
Sbjct:   27 SAGSTDAEELEKYVAIREELYKKAKEFNSKILGFETAIRRPYFHARPLNVAELENWHSYLDFIES----------------------EGDLNK---------------VVKLYERCLIACASYPEYWIRYVLCMEASGSMDLADNALARATQLFVKRQPEIHLFAARFKEQNGDIPGARAAYQLVHNEISPGFLEAIIKHANMERRLGKLEDAFSLYEQAIAIEKGKEHSQ------------------TLPMMYAQYSRFSYLVSGNAEKAREILIGALDQVQLSKPFLEAIIYFETILP 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR95_ECTSI6.320e-12656.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V484_9STRA2.750e-3936.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z852_9STRA3.390e-2842.71Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A8J2SLJ5_9STRA7.080e-2834.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
M4BN98_HYAAE5.230e-2731.60Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
C1E8A9_MICCC4.360e-2630.52TPR_MalT domain-containing protein n=1 Tax=Micromo... [more]
A0A383WHJ6_TETOB2.870e-2433.21Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A5J4XXZ2_9CHLO6.040e-2332.97Pre-mRNA-processing factor 39-like n=1 Tax=Treboux... [more]
A0A8J9RZN4_9CHLO1.880e-2131.72Probable pre-mRNA-processing factor 39 n=1 Tax=Coc... [more]
A0A7J8M6P2_9ROSI1.940e-2029.24Uncharacterized protein n=2 Tax=Gossypium TaxID=36... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50794contigH-elongata_contig50794:278..3443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.8
Seed ortholog evalue1.4e-108
Seed eggNOG ortholog2880.D8LR95
KEGG koko:K13217,ko:K20123
EggNOG free text desc.mRNA 5'-splice site recognition
EggNOG OGsKOG1258@1,KOG1258@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size1152
Cds size1152
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50794.12333.1prot_H-elongata_contig50794.12333.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50794 278..3443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930833.5485783-CDS-H-elongata_contig50794:277..4491622930833.5485783-CDS-H-elongata_contig50794:277..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 278..449 -
1691679590.1575112-CDS-H-elongata_contig50794:277..4491691679590.1575112-CDS-H-elongata_contig50794:277..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 278..449 -
1622930833.5664387-CDS-H-elongata_contig50794:723..9111622930833.5664387-CDS-H-elongata_contig50794:723..911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 724..911 -
1691679590.1719074-CDS-H-elongata_contig50794:723..9111691679590.1719074-CDS-H-elongata_contig50794:723..911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 724..911 -
1622930833.5831058-CDS-H-elongata_contig50794:1091..12531622930833.5831058-CDS-H-elongata_contig50794:1091..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 1092..1253 -
1691679590.1815221-CDS-H-elongata_contig50794:1091..12531691679590.1815221-CDS-H-elongata_contig50794:1091..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 1092..1253 -
1622930833.6086762-CDS-H-elongata_contig50794:1742..20781622930833.6086762-CDS-H-elongata_contig50794:1742..2078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 1743..2078 -
1691679590.190981-CDS-H-elongata_contig50794:1742..20781691679590.190981-CDS-H-elongata_contig50794:1742..2078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 1743..2078 -
1622930833.627274-CDS-H-elongata_contig50794:2832..29491622930833.627274-CDS-H-elongata_contig50794:2832..2949Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 2833..2949 -
1691679590.200677-CDS-H-elongata_contig50794:2832..29491691679590.200677-CDS-H-elongata_contig50794:2832..2949Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 2833..2949 -
1622930833.6481001-CDS-H-elongata_contig50794:3266..34431622930833.6481001-CDS-H-elongata_contig50794:3266..3443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 3267..3443 -
1691679590.2134855-CDS-H-elongata_contig50794:3266..34431691679590.2134855-CDS-H-elongata_contig50794:3266..3443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50794 3267..3443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50794.12333.1

>prot_H-elongata_contig50794.12333.1 ID=prot_H-elongata_contig50794.12333.1|Name=mRNA_H-elongata_contig50794.12333.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=384bp
ISRLYERAFGYRLTALEALWAGFRDFVERTSWDNLTPPCTPDAAGKVPQT
LCDAMRVPNGGSTSSGGIGTGEEAAASEGSTKAARKERLVKILEDKRKVS
LRGRERRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQ
DDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYW
WLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNR
TDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPP
LGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAART
TFRAAVADVPSSRELWLAFLEFEAAQPQVMCCG*
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mRNA from alignment at H-elongata_contig50794:278..3443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50794.12333.1 ID=mRNA_H-elongata_contig50794.12333.1|Name=mRNA_H-elongata_contig50794.12333.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3166bp|location=Sequence derived from alignment at H-elongata_contig50794:278..3443- (Himanthalia elongata Himel1 dioecious)
ATTTCCAGGTTGTACGAGCGCGCCTTCGGCTACCGACTGACGGCCCTGGA GGCGTTGTGGGCAGGATTCCGTGATTTTGTGGAGCGCACGTCGTGGGACA ATCTCACTCCGCCGTGCACCCCCGATGCCGCCGGCAAGGTGCCTCAAACG CTATGCGACGCGATGCGCGTACCCAATGTTTATGTGGAAAAATAACGGCC AACCCGCGATACTTAATTTTATTTATTTATTTATATCGATAACGGGTAAA GGGTAGCAAGTAGCGGTCGGGTGCTTTTCGGGGGAGGCCTAAGTGGTTTT GTTGGTATTTCTGATGTATTCTTGTATATCCTTTTGTTATATTTTTATGA CCTGCAATGCTACGCTACGCTAGACAGTGAAATAAATATGATGCAACATC ACGACGTTGTTGTGTGCACATCTCCACGACGACGAGAAACATAAGAAAAT ACATTTTTATAGACGTTTGATATATATATATATATATATGTTAGGGCGGC AGTACTAGTAGCGGCGGTATCGGCACCGGCGAGGAAGCAGCTGCATCCGA GGGTAGCACTAAAGCAGCGAGGAAGGAGCGTTTGGTCAAGATACTAGAGG ACAAGCGCAAGGTGGGTGAAATTCACCCCGAGTCACGTCGACTATACCTT GAGCGCGTTAATGGTAGGTGGGGCGTGCGTTGGGCTCCTGTGTCTGTCCG CGCCTCTTCGTGTGGTCCTCTGGCGTATTGCGCGAGACGCATTCGGCTTG TGTGCGGTTTGGTCTGGAGCCTCTTTTCTGCCGAGGGCGGCTTCAGCTCG GTGTTCGTCTAAGCTTCGCAGGCTTTTATTTTGGGAGTTATCTGCCCCGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNN GGGGGGGCTTCTGCCCGTTTTTGTTCTAACCCTCCCGCGCTTTTTTTTTG GGGGTTTTTTCCCCCCCCCCCCCCCCCCCTCTGCGCGCACACTGAATGCA TCCGTCCGATTGTCGATTTCGTAGAAGTTGTGCCTCATTTTGGCTCAGGC GACCTTTACAACCGCTTTGTCGAAATAACTTATTTCTTGCTACTATCAGA GTATACAGATGCCCACACCCAACTATTATATTATAAAATACTGATAAATA GAATTTTGTAATATATGTTTATAACCCAAGCCATGCAGGTAACCGTACGA TCTGGTTGGACATTGTTAACCATTCGCAAAAGGGAATCCAGAAACGGGAC GGTGGTTGAAGTCTGCTGTGGCGTCACCTAACCTGTCTCGGGGCGCTGTA GTGTTGTGTGCTCGTGCGGCGCTTTGATGCGCTGAGCTACCCGCGCCAAA TGTGTTGATCCTCAGGTCTCTCTTCGAGGCAGAGAACGCCGGGAGAGTTT CGAGAGACGGATCACTCGGCCGCACTTCCACGTAAAGCCTCTGGACGACG CACAGCTCTCCGCGTGGTCGGAGTTCCTGGATTTCGAGATCTCGCAGCAG GCTTGTGGGGGGAGCGGGCAAGATGACCCCTCCCTTACGGCCACCGCCTC CGCCGCCGGGGAGAACTCAATGGGGCGGAAGCGATCGCGCTGCAGCAAAG CCGCCGCCTTCCGGGGCTCCGACGTGGAGAGGCTTTTTGAGCGATGTTTG GTGCCGTGCGCATCGTACTGGTGGTTGTGGGAGCGTTACGCCCTTTGGAA GGTGCATCTGAAAAAATACGGGGAAAATAATGGGAGGGGTGTGGTTTGAT TTGTAAACCTCTTGAGGAATTCAGCGGAGACTGTAATCTCTTTTTCTTCC TTTTGTTTTTATAAGAGGGAAAGTCATTATCCTTGTATTGTTGTTTTTTG TCCTTTTTTGTCTTCTTATCCCTTCTATTTCTTCCCTTGTATTCTTTTTT TGCTGTTGGTTTTTTCTTGTATTTTTCTTTTTCTTGGCTTATGTTTTCGT CTTGTTACTTCTTATGTTCTTTTTTTTGTTCCTCATGAAAATATCGTGCG TTTGATACCATGCAGCTCCTCAGTGTCCGAAAGGGTTGATAAAAATGTCT ATACCCCCCCTCCCCTCCCGCAAAACCCCTCCCCCAAGAGCACCAGTTGT ATATTATTTTAACTATTTTGACAGCTCGTGTTCCAAAGTACGAGACGCAT GCAGTAAATGCCGTTGCCCTTTTTTTCCTCTTTGTACCAGGAGTCTGTCT GGGGGGTGGAGGCTGCGCTAGAGGTGGCGGAGCGCGCTTGCTCGCCCTTC CTGCAGTGGCGGCCGGAGGCGTTGTTCTTCCGTGCGGAGTTGTTAGAGAG GGTCAACAGGACTGATGATGCCAGGGCGGTGTACCGACGGGTCCTGTCCG AGGTGCAGCCTCGTTTCGGTTGTGTGTGTGGGGGGGGAGGGGGGTTGTGT GGGTGCGAATTGGCCCACGATTTGTACGGCGAACACAAAAAGTCTACTGG TGCTGGTCGTCTCCTCCTCGACCCTTTAACGCCCCCACCTCAACCAAGCA GCCCGTGCGTCGCTCAAAACACGCCGCGTCAGGTGGCACCGGGTCTCGTA GAGGCGGCGTGCAAGTTGGCGTGCTTTGAACGGCGGTGTGGAGACCGGCA GGCCGCCGATAAGGCCTACCGCTTGTTGCTGCCACCGCCGCTAGGGAGTT CCACGTCGGCGGAGGTGGCGATTGCGGGTGGGTCGTGGTCGGGGTGGGAG GAGACGACAGAAACGACAAGGTGGGAGATTCATGGGAAGAAAGGGAGACG AGTTCGGTTAGGGTTATCATAGTGCTTGTAAGGTCCGCGCGCTTGTACAG GCTGATATGTATGACATTACCATGAGCTCTCAACGTGTGGTGGGGTCTAG CCAAATATTTCGTTCGAGCAGTCGTTGTGTAGGAGGTTTAATTCCGGAGG GAGCCGGGCAAGGAAGCCATGGTAACAGACCAGACCATTTGACTCTCTCT ACAAGGCGCGACTCCTCCCCCCCCCCAACCCTCCTTCCTCCAAGACCGTA CCTTTACATGCAGCTGGCGAGATTCCAGCACCGCATTCTCGGGGACGCAG CGGCGGCAAGAACCACTTTCCGAGCGGCGGTAGCAGACGTTCCGAGCAGC CGGGAGCTTTGGCTAGCGTTTCTCGAGTTCGAGGCTGCTCAGCCCCAGGT GATGTGCTGCGGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig50794:278..3443-

>mRNA_H-elongata_contig50794.12333.1 ID=mRNA_H-elongata_contig50794.12333.1|Name=mRNA_H-elongata_contig50794.12333.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2304bp|location=Sequence derived from alignment at H-elongata_contig50794:278..3443- (Himanthalia elongata Himel1 dioecious)
ATTTCCAGGTTGTACGAGCGCGCCTTCGGCTACCGACTGACGGCCCTGGA
GGCGTTGTGGGCAGGATTCCGTGATTTTGTGGAGCGCACGTCGTGGGACA
ATCTCACTCCGCCGTGCACCCCCGATGCCGCCGGCAAGGTGCCTCAAACG
CTATGCGACGCGATGCGCGTACCCAATATTTCCAGGTTGTACGAGCGCGC
CTTCGGCTACCGACTGACGGCCCTGGAGGCGTTGTGGGCAGGATTCCGTG
ATTTTGTGGAGCGCACGTCGTGGGACAATCTCACTCCGCCGTGCACCCCC
GATGCCGCCGGCAAGGTGCCTCAAACGCTATGCGACGCGATGCGCGTACC
CAATGGCGGCAGTACTAGTAGCGGCGGTATCGGCACCGGCGAGGAAGCAG
CTGCATCCGAGGGTAGCACTAAAGCAGCGAGGAAGGAGCGTTTGGTCAAG
ATACTAGAGGACAAGCGCAAGGGCGGCAGTACTAGTAGCGGCGGTATCGG
CACCGGCGAGGAAGCAGCTGCATCCGAGGGTAGCACTAAAGCAGCGAGGA
AGGAGCGTTTGGTCAAGATACTAGAGGACAAGCGCAAGGTCTCTCTTCGA
GGCAGAGAACGCCGGGAGAGTTTCGAGAGACGGATCACTCGGCCGCACTT
CCACGTAAAGCCTCTGGACGACGCACAGCTCTCCGCGTGGTCGGAGTTCC
TGGATTTCGAGATCTCGCAGCAGGCTTGTGGGGGGAGCGGGCAAGATGAC
CCCTCCCTTACGGCCACCGCCTCCGCCGCCGGGGAGAACTCAATGGGGCG
GAAGCGATCGCGCTGCAGCAAAGCCGCCGCCTTCCGGGGCTCCGACGTGG
AGAGGCTTTTTGAGCGATGTTTGGTGCCGTGCGCATCGTACTGGTGGTTG
TGGGAGCGTTACGCCCTTTGGAAGGTCTCTCTTCGAGGCAGAGAACGCCG
GGAGAGTTTCGAGAGACGGATCACTCGGCCGCACTTCCACGTAAAGCCTC
TGGACGACGCACAGCTCTCCGCGTGGTCGGAGTTCCTGGATTTCGAGATC
TCGCAGCAGGCTTGTGGGGGGAGCGGGCAAGATGACCCCTCCCTTACGGC
CACCGCCTCCGCCGCCGGGGAGAACTCAATGGGGCGGAAGCGATCGCGCT
GCAGCAAAGCCGCCGCCTTCCGGGGCTCCGACGTGGAGAGGCTTTTTGAG
CGATGTTTGGTGCCGTGCGCATCGTACTGGTGGTTGTGGGAGCGTTACGC
CCTTTGGAAGGAGTCTGTCTGGGGGGTGGAGGCTGCGCTAGAGGTGGCGG
AGCGCGCTTGCTCGCCCTTCCTGCAGTGGCGGCCGGAGGCGTTGTTCTTC
CGTGCGGAGTTGTTAGAGAGGGTCAACAGGACTGATGATGCCAGGGCGGT
GTACCGACGGGTCCTGTCCGAGGAGTCTGTCTGGGGGGTGGAGGCTGCGC
TAGAGGTGGCGGAGCGCGCTTGCTCGCCCTTCCTGCAGTGGCGGCCGGAG
GCGTTGTTCTTCCGTGCGGAGTTGTTAGAGAGGGTCAACAGGACTGATGA
TGCCAGGGCGGTGTACCGACGGGTCCTGTCCGAGGTGGCACCGGGTCTCG
TAGAGGCGGCGTGCAAGTTGGCGTGCTTTGAACGGCGGTGTGGAGACCGG
CAGGCCGCCGATAAGGCCTACCGCTTGTTGCTGCCACCGCCGCTAGGGAG
TTCCACGTCGGCGGAGGTGGCGATTGCGGGTGGGTCGTGGTCGGGGTGGG
AGGAGACGACAGAAACGACAAGGTGGCACCGGGTCTCGTAGAGGCGGCGT
GCAAGTTGGCGTGCTTTGAACGGCGGTGTGGAGACCGGCAGGCCGCCGAT
AAGGCCTACCGCTTGTTGCTGCCACCGCCGCTAGGGAGTTCCACGTCGGC
GGAGGTGGCGATTGCGGGTGGGTCGTGGTCGGGGTGGGAGGAGACGACAG
AAACGACAAGACCGTACCTTTACATGCAGCTGGCGAGATTCCAGCACCGC
ATTCTCGGGGACGCAGCGGCGGCAAGAACCACTTTCCGAGCGGCGGTAGC
AGACGTTCCGAGCAGCCGGGAGCTTTGGCTAGCGTTTCTCGAGTTCGAGG
CTGCTCAGCCCCAGGTGATGTGCTGCGGCTAGACCGTACCTTTACATGCA
GCTGGCGAGATTCCAGCACCGCATTCTCGGGGACGCAGCGGCGGCAAGAA
CCACTTTCCGAGCGGCGGTAGCAGACGTTCCGAGCAGCCGGGAGCTTTGG
CTAGCGTTTCTCGAGTTCGAGGCTGCTCAGCCCCAGGTGATGTGCTGCGG
CTAG
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