prot_H-elongata_contig50708.12318.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50708.12318.1
Unique Nameprot_H-elongata_contig50708.12318.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
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BLAST of mRNA_H-elongata_contig50708.12318.1 vs. uniprot
Match: D8LL04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL04_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.310e-12
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0 
Query:    1 MEAHSSGTKINDVVFERGGVFLVTAGDDSFVKVWDAVSGRQKAALK 46
            +EAHSSG  +N VVFE+GGV L TAGDDS+VKVWD  SGRQ+AALK
Sbjct:  251 IEAHSSG--VNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALK 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50708.12318.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL04_ECTSI1.310e-1273.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..50
e-value: 5.7E-7
score: 30.9
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 22..36
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 3..44
score: 10.074
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 3..44
score: 10.408
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 9..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50708contigH-elongata_contig50708:3447..3602 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50708.12318.1mRNA_H-elongata_contig50708.12318.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50708 3435..3602 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50708.12318.1 ID=prot_H-elongata_contig50708.12318.1|Name=mRNA_H-elongata_contig50708.12318.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MEAHSSGTKINDVVFERGGVFLVTAGDDSFVKVWDAVSGRQKAALKVRRY
I*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf