mRNA_H-elongata_contig50550.12303.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50550.12303.1
Unique NamemRNA_H-elongata_contig50550.12303.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: D7G111_ECTSI (Glycine/D-amino acid oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G111_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 3.530e-54
Identity = 87/112 (77.68%), Postives = 98/112 (87.50%), Query Frame = 1
Query:    1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREA--RQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
            G PDAVDTFCPDVLNTGVKPSLLV+RAR+RFE KGG+VMEFTSIDGVSVRPDGV ++TSP +PPG +  A   A   +VTSRLVLDCMGNASP+V+Q+RWG KPEGVCLVVG
Sbjct:  143 GDPDAVDTFCPDVLNTGVKPSLLVDRARRRFEAKGGVVMEFTSIDGVSVRPDGVALSTSPSSPPGGKPPASGAATGEEVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVG 254          
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A6H5L433_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L433_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 4.890e-50
Identity = 85/112 (75.89%), Postives = 96/112 (85.71%), Query Frame = 1
Query:    1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEE--AKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
            G P AVDTFCPDVLNTGVKPSLLV+RAR+RFE KGG+VMEFTSIDGVSVRPDGV ++TSP +PPG +  A       +VTSRLVLDCMGNASP+V+Q+RWG KPEGVCLVVG
Sbjct:  241 GDPGAVDTFCPDVLNTGVKPSLLVDRARRRFETKGGVVMEFTSIDGVSVRPDGVALSTSPSSPPGSKPPASGAGTGEEVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVG 352          
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A836CJX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.220e-39
Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDG--VVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
            G P+ VDTFCPDVLN GVKPS++V+RAR RFE  GG+VME  +I GVSVRP+G  V VAT P   P            VT+RLVLDCMGN SP+V+Q+RWG KP+G+CLVVG
Sbjct:   10 GDPNGVDTFCPDVLNLGVKPSVMVQRARARFEAAGGVVMEQAAISGVSVRPNGASVAVATGPADKP--------VTSNVTARLVLDCMGNGSPMVRQIRWGRKPDGMCLVVG 113          
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A7S0KT21_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KT21_MICPS)

HSP 1 Score: 114 bits (286), Expect = 1.980e-27
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   34 DVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
            D+LNTGVKPSLL++  R  FE KGG+V+E T+I G+SVRPDG  + TSP    G +         +T+RLV+DCMG ASP+V+Q RWG KP+GVCLVVG
Sbjct:  224 DILNTGVKPSLLLDAIRGNFEAKGGVVLEKTAISGISVRPDGAELDTSPLD--GGDGPGG-----ITARLVVDCMGFASPIVRQARWGQKPDGVCLVVG 315          
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A5P8NA30_DUNSA (Lycopene cyclase family protein CruP n=2 Tax=Dunaliella TaxID=3044 RepID=A0A5P8NA30_DUNSA)

HSP 1 Score: 106 bits (265), Expect = 1.440e-24
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
            G P + D +  DVLN GV+P LL+ R R + E  GG V E  ++ GV V P+G  ++           K    + +V SRLV+DCMG+ASP+VQQ+RWG KP+G+C+VVG
Sbjct:  221 GKPQSKDVWTRDVLNCGVRPDLLIARMRSKLEALGGKVYELAALQGVQVAPNGCTLSLKSMD------KGSETSMRVHSRLVIDCMGHASPIVQQIRWGKKPDGICIVVG 324          
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A7S1UCL5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCL5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.350e-24
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
            G PD  + + P+VLN GV+PS+ V+RAR+ FE  GG+VME  +++ + V   G +V     A PGEE     + R+VT RLV+D MGNASP+ +Q+R G KP GVC VVG
Sbjct:  246 GDPDNQEVWVPEVLNMGVRPSVAVQRARENFEAAGGVVMEEVNVENIDVYGMGNIVNV---AVPGEE-----KPRRVTCRLVVDAMGNASPIARQIRGGEKPFGVCAVVG 347          
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A383W046_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W046_TETOB)

HSP 1 Score: 104 bits (259), Expect = 8.860e-24
Identity = 58/120 (48.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGV-VVATSPFAPPGEEAKAE---------REARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
            G     D +  DVLN GVKP +LV   RQ+ E  GG V E   + GV V  DGV +V TS   P G  A A          + A  +T+RL+LDCMG+ASP+V+Q+RWG KP+GVCLVVG
Sbjct:  157 GFHGGADVWTRDVLNLGVKPDMLVSLMRQKLEAAGGKVYEEVQLGGVEVLSDGVSLVVTSQTVPGGAAAAAGDAQSSGTRVQYASSITTRLLLDCMGHASPVVRQLRWGKKPDGVCLVVG 276          
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A7S1XX57_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX57_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.720e-23
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
            G PD  + + P+VLN GV+PS+ V+RAR+ FE  GG+VME  +++ + V   G +V     A PGEE     + R+VT RLV+D MGNASP+ +Q+R G KP GVC VVG
Sbjct:  246 GDPDNQEVWVPEVLNMGVRPSVAVQRARENFEAAGGVVMEEVNVENIDVYGMGNIVNV---AVPGEE-----KPRRVTCRLVVDAMGNASPIARQIRGGEKPFGVCAVVG 347          
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A8J9RAY4_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RAY4_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 2.260e-23
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   19 DTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVV------ATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
            D +  DVLN GV+P  L+ + +QRFE  GG V+E T  +GV+V P+G+ +           A  G + ++      +T RL++DCMGN SP+V+Q RWG +P+GVCLVVG
Sbjct:  203 DVWTRDVLNLGVRPDKLIAKVKQRFEAAGGTVLELTGAEGVAVHPNGIFLDIPTNDKVQAQASNGSQQESAAGGAGITGRLLIDCMGNFSPIVRQARWGQRPDGVCLVVG 312          
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A5J4Y8J5_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y8J5_9CHLO)

HSP 1 Score: 102 bits (253), Expect = 5.600e-23
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
            G   + + +  DVLN GVKP +L+ + R +FE  GG V E T   GV V PDGV +            + + +   VT +L++DCMGN SP+V+QVRWG+KP+GVC+VVG
Sbjct:  211 GFHGSQEVWTRDVLNLGVKPDMLIAKMRHKFEAAGGKVFERTVAQGVRVHPDGVAL------------QLQADQHDVTGQLIIDCMGNFSPIVRQVRWGHKPDGVCMVVG 308          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G111_ECTSI3.530e-5477.68Glycine/D-amino acid oxidase-like protein n=1 Tax=... [more]
A0A6H5L433_9PHAE4.890e-5075.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJX3_9STRA2.220e-3961.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0KT21_MICPS1.980e-2757.58Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A5P8NA30_DUNSA1.440e-2445.45Lycopene cyclase family protein CruP n=2 Tax=Dunal... [more]
A0A7S1UCL5_9STRA7.350e-2449.09Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A383W046_TETOB8.860e-2448.33Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7S1XX57_9STRA1.720e-2349.09Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A8J9RAY4_9CHLO2.260e-2343.64Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A5J4Y8J5_9CHLO5.600e-2344.55Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50550contigH-elongata_contig50550:1630..3655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1e-43
Seed eggNOG ortholog2880.D7G111
EggNOG OGs28PI8@1,2QW6A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size332
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50550.12303.1prot_H-elongata_contig50550.12303.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50550 1630..3653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.1092324-CDS-H-elongata_contig50550:1629..16851622930831.1092324-CDS-H-elongata_contig50550:1629..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50550 1630..1685 +
1691679589.13228-CDS-H-elongata_contig50550:1629..16851691679589.13228-CDS-H-elongata_contig50550:1629..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50550 1630..1685 +
1622930831.125549-CDS-H-elongata_contig50550:2063..22351622930831.125549-CDS-H-elongata_contig50550:2063..2235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50550 2064..2235 +
1691679589.1415205-CDS-H-elongata_contig50550:2063..22351691679589.1415205-CDS-H-elongata_contig50550:2063..2235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50550 2064..2235 +
1622930831.1438525-CDS-H-elongata_contig50550:3551..36531622930831.1438525-CDS-H-elongata_contig50550:3551..3653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50550 3552..3653 +
1691679589.1496556-CDS-H-elongata_contig50550:3551..36531691679589.1496556-CDS-H-elongata_contig50550:3551..3653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50550 3552..3653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50550.12303.1

>prot_H-elongata_contig50550.12303.1 ID=prot_H-elongata_contig50550.12303.1|Name=mRNA_H-elongata_contig50550.12303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVR
PDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGN
KPEGVCLVVG
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mRNA from alignment at H-elongata_contig50550:1630..3655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50550.12303.1 ID=mRNA_H-elongata_contig50550.12303.1|Name=mRNA_H-elongata_contig50550.12303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2026bp|location=Sequence derived from alignment at H-elongata_contig50550:1630..3655+ (Himanthalia elongata Himel1 dioecious)
GGACACCCCGACGCGGTGGATACCTTTTGCCCCGACGTCCTCAACACGGG TGTAAAGTGCGCCATATAATACTAGGGGAGGAAGGGGGGGGCGTTGACGA TTTTGTCCCCGGAGTTTGTTTGTAGGGGGGGCATATTATAACATCCCCTA TCTGGGATAACTTTTGTACGTCCCCCGCCGTGGAATGAGTGTATTGGTGT ATCGAGCCACTTCAGCTCCGTGAAGTCATACATTCCACCATCGGCTCGGC CCGGCTCGGCCAAACGACGCCTCTGCACACCACATCCCGACCCCCTCGCC TGAAAAACCCGCACATCTAAACCCTACCCCTTTCCCTCCCCAAAAAAAAC AAAAACAAAAAACCCCGCTACACCCACTCCCCTAATAAAAAATAACCTCC TGCCCCAACGTTCCGACCGCAACTATGCCACCAGGCCTTCCCTGCTGGTG GAACGAGCACGGCAGCGCTTCGAGGGCAAGGGGGGGATCGTCATGGAGTT CACGTCTATCGACGGCGTTAGTGTGAGGCCTGACGGGGTCGTCGTGGCAA CGTCCCCGTTCGCGCCTCCAGGGGAAGAGGCGAAGGCGGAGAGGGAAGCG CGACAGGTTCGTAAGGGTGCAGGGTTGTACTATGCTATGCTGTTGCATCT ATATTTATTTGTTTCATCTGTTGATACCCTGTGTCGTCGTTCGACTTCGG GTGTTCATACGTAAAGAGGCCGATTGCCGAAAATAGAGACGCTGATCCGC AGATGGTACAAACCCGCTGCCGCTGTACGCTAGACAGCGGACGCTACAGT GGTATCAACTGACGTAGGTATACGTTTTTTTTTACATCGCGTTTTTATTA ATATCAGTAGACATTTACTTTCTTGATTTACTCGAAAAATTTGTGCCAAT TTCATTTTTGTCTACATACGGTAAGAGAGCCCTAGAAGAAAAAAAAACTG AAGCCATCGATTTCCCGTATCTAGGTGTATCTGATGCTCCAGCATCTGTA TTACGTTTGCATCTGAATGCGTGTAGGTACAGTATTTATGAATACATGCA TATATGATATAATTTTTATATAAATTTATGTATAGAGCGATAGAGTAATG TCTTGGTCGCTTCCGTTCGTATATTCCATGGCTGGATACTAAACATACAG CATATGGTTATTTAAACGATGACGTTCAACTATGCGCCTTTTTTTGTTTT GCTTTTAGAGGGCAAAGTGGGACGCGGCCTGTGTTGGTCTACGCCTTTTT TTCTTCCTTCTTTTCTTTTTCTTTTTTGAATGTGCATTAGATTATATACT CGTTATTTAACGTTCCGTTTTTTCTACAATATACCAAGTATTAGTTAAAG ACTATATAAATAATATCTACATTCACTCCGTATAACATTGAGACTCTTGG TCTCTCTACGTTCATCCGTTACTCAAGCTACTGTACTTCCAGGACTGCTG GATCAGTGTCGGCGGACTCTCGGTAGTAAACGTCATCGATACGCAATTGC GTGAGCTGATGAAATCGGGATTGACCCGATGGCGGTTTGACGGTAGAGAT GGACATCGTCGCGGAAAACGAGAAGATCGAGAAGATCCCGGGAGTACGCA CCAGATTCAGCCTGGGTTGGGAAAATGAGCGGGCTGACGCGGGACGGGAC GGCCGAACCCGTTTTGCGCGACCGACCAAATTATCAGCCGCGAACTGTGA CAGGAAGAAAAAATAAATAAATAAATAAATAAATAAAAAATCCCTGTTCA GCCAACCACAAGGAGAAGGCAACCAATCAAATCCGGTTGATCCTTACTCT GCTATCCATGATGACGTCATGATCACACATTGTATTACATTATACTACAT ACACTACACTTCAGTCGTTGTTATTCCTCTCGCATGTCTGTCTGCTTACG GCTGGGGGGGGGGATTGAACAGGTCACGTCGAGGCTGGTGCTTGACTGCA TGGGGAACGCATCTCCCCTCGTGCAGCAGGTTCGATGGGGCAACAAGCCG GAGGGCGTCTGCCTCGTGGTGGGATC
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Coding sequence (CDS) from alignment at H-elongata_contig50550:1630..3655+

>mRNA_H-elongata_contig50550.12303.1 ID=mRNA_H-elongata_contig50550.12303.1|Name=mRNA_H-elongata_contig50550.12303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig50550:1630..3655+ (Himanthalia elongata Himel1 dioecious)
GGACACCCCGACGCGGTGGATACCTTTTGCCCCGACGTCCTCAACACGGG
TGTAAAGGACACCCCGACGCGGTGGATACCTTTTGCCCCGACGTCCTCAA
CACGGGTGTAAAGCCTTCCCTGCTGGTGGAACGAGCACGGCAGCGCTTCG
AGGGCAAGGGGGGGATCGTCATGGAGTTCACGTCTATCGACGGCGTTAGT
GTGAGGCCTGACGGGGTCGTCGTGGCAACGTCCCCGTTCGCGCCTCCAGG
GGAAGAGGCGAAGGCGGAGAGGGAAGCGCGACAGGCCTTCCCTGCTGGTG
GAACGAGCACGGCAGCGCTTCGAGGGCAAGGGGGGGATCGTCATGGAGTT
CACGTCTATCGACGGCGTTAGTGTGAGGCCTGACGGGGTCGTCGTGGCAA
CGTCCCCGTTCGCGCCTCCAGGGGAAGAGGCGAAGGCGGAGAGGGAAGCG
CGACAGGTCACGTCGAGGCTGGTGCTTGACTGCATGGGGAACGCATCTCC
CCTCGTGCAGCAGGTTCGATGGGGCAACAAGCCGGAGGGCGTCTGCCTCG
TGGTGGGAGTCACGTCGAGGCTGGTGCTTGACTGCATGGGGAACGCATCT
CCCCTCGTGCAGCAGGTTCGATGGGGCAACAAGCCGGAGGGCGTCTGCCT
CGTGGTGGGA
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