prot_H-elongata_contig50549.12302.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50549.12302.1
Unique Nameprot_H-elongata_contig50549.12302.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
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BLAST of mRNA_H-elongata_contig50549.12302.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 9.820e-6
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 0 
Query:    4 MINVVSPRCHHLSCTRGPSYGHDGDRKATFCSGHRL 39
            M++VVS RC H  CT+ PSYG+DG +KA  C+ H L
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHAL 36
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50549.12302.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI9.820e-655.56EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50549contigH-elongata_contig50549:3692..4063 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50549.12302.1mRNA_H-elongata_contig50549.12302.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50549 3671..4063 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50549.12302.1 ID=prot_H-elongata_contig50549.12302.1|Name=mRNA_H-elongata_contig50549.12302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MSGMINVVSPRCHHLSCTRGPSYGHDGDRKATFCSGHRLLGMVNVVSPRC
VENGCMKGPSYGFEGRRASLCAKHKRDGMLNVVSPRCLELSCIRGPSYAL
PGDRKPLFCAKHKQDKMINVMTRK
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