mRNA_H-elongata_contig50520.12297.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50520.12297.1
Unique NamemRNA_H-elongata_contig50520.12297.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A6H5KKG8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG8_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.610e-38
Identity = 90/212 (42.45%), Postives = 118/212 (55.66%), Query Frame = 1
Query:    1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCA-CIEAAVMKR-ILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRG 630
            LE MM+ IV V   FGL VSE KT  M M P  ++     V A GQ Y Q D FVYLG TIS  G    EI  R+  AW C+ + S ++YD        K+R L+A+V+E +LYGC +W L+   + KL   HR  L RC+    S +   D R LSY + L++  C   IEA V KR +L +AG V+R+ D RLP  ++   M GG + RG
Sbjct:  161 LEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVCKRRLLCFAGFVMRMEDSRLPKRMLLAAMAGGVEYRG 369          
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A6H5JGW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW6_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 7.940e-30
Identity = 85/233 (36.48%), Postives = 118/233 (50.64%), Query Frame = 1
Query:   85 MRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCA-CIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKC----WMRAAQDAPEWYRKVETGAEAFM 768
            M P  ++     V   GQ Y Q D FVYLG TIS       EI  R+  AW C+ + S ++YD        K+R L+A+V+E +L GC +W L+   + KL   +R  L R +    S +   D R LSY + L++  C   IEA V KR L +AG V+R+ D+RLPN ++   M GG   RG        R+ +   AF +  +     W  +A+D   WY KVE GA  FM
Sbjct:    1 MLPKGIEERPFTVSTAGQTYKQTDRFVYLGRTISADRKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLCGCASWSLTAEHYTKLNGTYRQFLTRRIG--WSKRKRSD-RPLSYAQALIQAGCEEIIEATVHKRRLCFAGFVMRMEDNRLPNRMLLEAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFM 230          
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 125 bits (314), Expect = 1.010e-29
Identity = 81/266 (30.45%), Postives = 129/266 (48.50%), Query Frame = 1
Query:    1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAEAFMSASSTKRVNE 798
            L+++M +       F L +S  KT  +   PP +  +  ++   GQ+     TF YLGSTIS    +  EI+RR   A + F +    V+ +  I +  K+   K  V+  +LYG  TW L      KL EA +   LR +      + TP      + EVL R  C  +E+ + KR L +AG +VR+ D+RLP I++ GE+  G +  G+P KR K  +     +  +  + W   A+D   W   + TG ++F  A  T+R+ +
Sbjct:  126 LQSLMDSFTNASRRFDLTISIKKTEVLCQPPPGVLLDKPSIIVNGQKLKTTKTFPYLGSTISNDEQLHHEIERRIAKASSSFGRLKDRVWKSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSFE-AGRTERIRQ 383          
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 127 bits (320), Expect = 1.130e-29
Identity = 82/266 (30.83%), Postives = 130/266 (48.87%), Query Frame = 1
Query:    1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAEAFMSASSTKRVNE 798
            L+++M +       F L +S  KT  +   PP +  +  ++   GQ+     TF YLGSTIS    +  EI+RR   A + F +    V+ +  I +  K+   KA V+  +LYG  TW L      KL EA +   LR +      + TP      + EVL R  C  +E+ + KR L +AG +VR+ D+RLP I++ GE+  G +  G+P KR K  +     +  +  + W   A+D   W   + TG ++F  A  T+R+ +
Sbjct:  412 LQSLMDSFANASRRFDLTISIKKTEVLCQPPPGVLLDKPSIIVNGQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSFE-AGRTERIRQ 669          
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 122 bits (307), Expect = 1.360e-29
Identity = 78/251 (31.08%), Postives = 121/251 (48.21%), Query Frame = 1
Query:    1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETG 753
            L+++M +       F L +S  KT  +   PP +  +  ++   GQ+     TF YLGSTIS    +  EI+RR   A + F +    V+ +  I +  K+   KA V+  +LYG  TW L      KL EA +   LR +      + TP      + EVL R  C  +E+ + KR L +AG +VR+ D+RLP I++ GE+  G +  G+P KR K  +     +  +  + W   A+D   W   + TG
Sbjct:   59 LQSLMDSFANASRRFDLTISIKKTEVLCQPPPGVLLDKPSIIVNGQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTG 302          
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: UPI001CF59A58 (uncharacterized protein LOC122965242 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF59A58)

HSP 1 Score: 125 bits (313), Expect = 3.130e-29
Identity = 82/253 (32.41%), Postives = 117/253 (46.25%), Query Frame = 1
Query:    1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAE 759
            L+ +M      C AFGL +S  KT  M    P        +     R    DTFVYLGSTISR G++  EI  RT      F K  + V+ +  I +  K+      +L  +LY    W        +L   H+  L R LN    +  TPD  +L   E      C  IE+ +MK  L +AG VVR+ D+R+P  +  GE++ GK+ + +P KR K  +     AF I  + W   A+   EW + ++ GAE
Sbjct:  105 LQEIMNLFSTACDAFGLTISIKKTKVMFTPVPGAPYVEPDIFVKKTRLEVVDTFVYLGSTISRDGSLDAEINLRTQKTGTAFGKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLERFHQKCLRRILNIKWQS-LTPDTAVLQIAE------CPSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKPKKRFKDCIKNNLKAFKIPVENWETLAKSRTEWRQLLKRGAE 350          
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: UPI001CF21395 (uncharacterized protein LOC122952729 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF21395)

HSP 1 Score: 125 bits (313), Expect = 4.630e-29
Identity = 83/253 (32.81%), Postives = 118/253 (46.64%), Query Frame = 1
Query:    1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAE 759
            L+ +M      C AFGL +S  KT  M    P        +     R    DTFVYLGSTISR G++  EI  RT  A   F K  + V+ +  I +  K+      +L  +LY    W        +L   H+  L R LN    +  TPD  +L   E      C  IE+ +MK  L +AG VVR+ D+R+P  +  GE++ GK+ + +P KR K  +     AF I  + W   A+   EW + ++ GAE
Sbjct:  158 LQEIMNLFSRACDAFGLTISIKKTKVMFTPVPGAPYVEPDIFVKKTRLEFVDTFVYLGSTISRDGSLDAEINLRTQKASIAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLETFHQKCLRRILNIKWQS-LTPDTGVLQIAE------CPSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKPKKRFKDCIKNNLKAFKIPVENWETLAKSRTEWRQLLKRGAE 403          
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: UPI00077B22FF (uncharacterized protein LOC107355912 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B22FF)

HSP 1 Score: 124 bits (310), Expect = 2.120e-28
Identity = 82/254 (32.28%), Postives = 120/254 (47.24%), Query Frame = 1
Query:    1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRML-SYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAE 759
            L+ +M      C AFGL +S  KT  M    P        +     R    DTFVYLGSTISR G++  EI  RT  +   F K  + V+ +  I +  K+      +L  +LY    W        +L+  H+  L R LN          +R L S   VL   +C  IE+ +MK  L +AG VVR+ D+R+P  +  GE++ GK+++ +P KR K  +     AF I  + W   A+   EW + ++ GAE
Sbjct:  283 LQEIMNLFSTACDAFGLTISIKKTKVMFTPVPGAPYVEPDIFVKKTRLEVVDTFVYLGSTISRDGSLDAEINLRTQKSSAAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLKRFHQKCLRRILNI--------KWRSLTSDTAVLQIAECPTIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRQQHKPKKRFKDCIKNNLKAFKIPVENWETLAKSRTEWRQLLKRGAE 528          
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 122 bits (307), Expect = 7.210e-28
Identity = 77/255 (30.20%), Postives = 121/255 (47.45%), Query Frame = 1
Query:    1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAEAF 765
            +++ +    + C  FGL ++  KT  M    P       ++   GQR +  D F YLGS +SR   +  E+  R   A   F +  + V+D   I    K++  +A VL  +L+GC TW +      KL   H   L + L      +  PD       EVL+R D   I   + +  L +AG V R+ D+RLP +++ GE+  GK+ +G   KR K  +     AF I+P  W  AAQD  +W   ++ GA+++
Sbjct:  664 MQHSVDIFADACNNFGLTINRKKTEVMYQPAPRKPYAEPSITISGQRLNAVDKFTYLGSILSRSVVMDDELIARLAKANAAFGRLRKNVWDRRGIRQKTKIKVYRAAVLSTLLHGCETWTIYQRHAKKLNHFHTTSLRKLLGIKWQDKV-PD------TEVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDKIKWRSAIKNGAQSY 911          
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT)

HSP 1 Score: 108 bits (270), Expect = 1.930e-23
Identity = 71/215 (33.02%), Postives = 107/215 (49.77%), Query Frame = 1
Query:    1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKR 645
            L+++M +       F L +S  KT  +   PP +  +  ++   GQ+     TF YLGSTIS    +  EI+RR   A + F +    V+ +  I +  K+   KA V+  +LYG  TW L      KL E  +   LR +      + TP      + EVL R  C  IE+ + KR L +AG +VR+ D+RLP I++ GE+  G +  G+P KR
Sbjct:  142 LQSLMDSFANASRRFDLTISIKKTEVLCQPPPGVLLDKPSIIVNGQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFGRLKDRVWKSHDIKLETKIGLFKAVVISTLLYGGETWTLYARHIKKL-EVFQQRSLRSIMRVNWEEKTP------HSEVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKR 349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KKG8_9PHAE2.610e-3842.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JGW6_9PHAE7.940e-3036.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S7K883_PARCT1.010e-2930.45RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT1.130e-2930.83RNA-directed DNA polymerase from mobile element jo... [more]
A0A6S7JKI9_PARCT1.360e-2931.08Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
UPI001CF59A583.130e-2932.41uncharacterized protein LOC122965242 n=1 Tax=Acrop... [more]
UPI001CF213954.630e-2932.81uncharacterized protein LOC122952729 n=1 Tax=Acrop... [more]
UPI00077B22FF2.120e-2832.28uncharacterized protein LOC107355912 n=1 Tax=Acrop... [more]
A0A8C5PP25_9ANUR7.210e-2830.20Reverse transcriptase domain-containing protein n=... [more]
A0A6S7JBE9_PARCT1.930e-2333.02Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50520contigH-elongata_contig50520:2..817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score110.2
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog13735.ENSPSIP00000001008
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,49BMJ@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size816
Cds size807
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.6406822-UTR-H-elongata_contig50520:1..101622930830.6406822-UTR-H-elongata_contig50520:1..10Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50520 2..10 +
1691679588.9837456-UTR-H-elongata_contig50520:1..101691679588.9837456-UTR-H-elongata_contig50520:1..10Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50520 2..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.6573493-CDS-H-elongata_contig50520:10..8171622930830.6573493-CDS-H-elongata_contig50520:10..817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50520 11..817 +
1691679588.9960916-CDS-H-elongata_contig50520:10..8171691679588.9960916-CDS-H-elongata_contig50520:10..817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50520 11..817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50520.12297.1prot_H-elongata_contig50520.12297.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50520 11..817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50520.12297.1

>prot_H-elongata_contig50520.12297.1 ID=prot_H-elongata_contig50520.12297.1|Name=mRNA_H-elongata_contig50520.12297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
MMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDT
FVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRF
LKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDY
RMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMV
GGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAE
AFMSASSTKRVNETNARYA
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mRNA from alignment at H-elongata_contig50520:2..817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50520.12297.1 ID=mRNA_H-elongata_contig50520.12297.1|Name=mRNA_H-elongata_contig50520.12297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=816bp|location=Sequence derived from alignment at H-elongata_contig50520:2..817+ (Himanthalia elongata Himel1 dioecious)
CTGGAAAATATGATGACGGCCATCGTCGAGGTCTGTGCGGCGTTCGGCCT CAAAGTGTCGGAAAATAAGACGATGACTATGAACATGCGCCCCCCCACCA TGAAGGCAGAAGCGGTTGCCGTGGAGGCCGTGGGGCAAAGGTACAGCCAA TTCGACACCTTCGTGTATCTTGGCAGCACCATCAGCAGAGTTGGGAACAT CGGCCCTGAGATCAAACGCCGTACTGGCTACGCCTGGAACTGCTTCCTCA AATACAGCAGGGCAGTGTATGACAACCCATACATCGCAGTGGCAGACAAG GTCCGTTTTCTGAAGGCGAAAGTACTCGAGGTCATGCTCTACGGCTGTGT GACCTGGATTCTTTCACCCGGCGACTTCGACAAACTGCGGGAAGCCCACC GTGGAATGCTGCTGAGGTGCCTCAATGCCTACACCTCGACGCAGGCCACC CCTGACTACCGCATGCTCTCATACCTCGAGGTCCTCCTCAGGACTGACTG TGCGTGCATTGAGGCTGCTGTGATGAAGCGCATCCTCCACTACGCCGGCC GCGTCGTGCGCATACACGACGATCGCCTTCCCAACATCGTCATGCGTGGC GAAATGGTTGGAGGGAAGAAAAAACGGGGCCAGCCTGCGAAACGCCTCAA ACGCCGTGTCATGAAATACTGCACTGCCTTCGGAATCGACCCCAAGTGTT GGATGCGGGCCGCCCAAGATGCACCTGAGTGGTACCGTAAAGTAGAGACG GGAGCTGAAGCCTTCATGTCGGCCTCGTCCACCAAGCGTGTGAACGAGAC CAACGCCCGCTACGCA
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Coding sequence (CDS) from alignment at H-elongata_contig50520:2..817+

>mRNA_H-elongata_contig50520.12297.1 ID=mRNA_H-elongata_contig50520.12297.1|Name=mRNA_H-elongata_contig50520.12297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig50520:2..817+ (Himanthalia elongata Himel1 dioecious)
ATGATGACGGCCATCGTCGAGGTCTGTGCGGCGTTCGGCCTCAAAGTGTC
GGAAAATAAGACGATGACTATGAACATGCGCCCCCCCACCATGAAGGCAG
AAGCGGTTGCCGTGGAGGCCGTGGGGCAAAGGTACAGCCAATTCGACACC
TTCGTGTATCTTGGCAGCACCATCAGCAGAGTTGGGAACATCGGCCCTGA
GATCAAACGCCGTACTGGCTACGCCTGGAACTGCTTCCTCAAATACAGCA
GGGCAGTGTATGACAACCCATACATCGCAGTGGCAGACAAGGTCCGTTTT
CTGAAGGCGAAAGTACTCGAGGTCATGCTCTACGGCTGTGTGACCTGGAT
TCTTTCACCCGGCGACTTCGACAAACTGCGGGAAGCCCACCGTGGAATGC
TGCTGAGGTGCCTCAATGCCTACACCTCGACGCAGGCCACCCCTGACTAC
CGCATGCTCTCATACCTCGAGGTCCTCCTCAGGACTGACTGTGCGTGCAT
TGAGGCTGCTGTGATGAAGCGCATCCTCCACTACGCCGGCCGCGTCGTGC
GCATACACGACGATCGCCTTCCCAACATCGTCATGCGTGGCGAAATGGTT
GGAGGGAAGAAAAAACGGGGCCAGCCTGCGAAACGCCTCAAACGCCGTGT
CATGAAATACTGCACTGCCTTCGGAATCGACCCCAAGTGTTGGATGCGGG
CCGCCCAAGATGCACCTGAGTGGTACCGTAAAGTAGAGACGGGAGCTGAA
GCCTTCATGTCGGCCTCGTCCACCAAGCGTGTGAACGAGACCAACGCCCG
CTACGCAATGATGACGGCCATCGTCGAGGTCTGTGCGGCGTTCGGCCTCA
AAGTGTCGGAAAATAAGACGATGACTATGAACATGCGCCCCCCCACCATG
AAGGCAGAAGCGGTTGCCGTGGAGGCCGTGGGGCAAAGGTACAGCCAATT
CGACACCTTCGTGTATCTTGGCAGCACCATCAGCAGAGTTGGGAACATCG
GCCCTGAGATCAAACGCCGTACTGGCTACGCCTGGAACTGCTTCCTCAAA
TACAGCAGGGCAGTGTATGACAACCCATACATCGCAGTGGCAGACAAGGT
CCGTTTTCTGAAGGCGAAAGTACTCGAGGTCATGCTCTACGGCTGTGTGA
CCTGGATTCTTTCACCCGGCGACTTCGACAAACTGCGGGAAGCCCACCGT
GGAATGCTGCTGAGGTGCCTCAATGCCTACACCTCGACGCAGGCCACCCC
TGACTACCGCATGCTCTCATACCTCGAGGTCCTCCTCAGGACTGACTGTG
CGTGCATTGAGGCTGCTGTGATGAAGCGCATCCTCCACTACGCCGGCCGC
GTCGTGCGCATACACGACGATCGCCTTCCCAACATCGTCATGCGTGGCGA
AATGGTTGGAGGGAAGAAAAAACGGGGCCAGCCTGCGAAACGCCTCAAAC
GCCGTGTCATGAAATACTGCACTGCCTTCGGAATCGACCCCAAGTGTTGG
ATGCGGGCCGCCCAAGATGCACCTGAGTGGTACCGTAAAGTAGAGACGGG
AGCTGAAGCCTTCATGTCGGCCTCGTCCACCAAGCGTGTGAACGAGACCA
ACGCCCGCTACGCA
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