mRNA_H-elongata_contig50474.12290.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50474.12290.1
Unique NamemRNA_H-elongata_contig50474.12290.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 4.080e-42
Identity = 98/253 (38.74%), Postives = 141/253 (55.73%), Query Frame = 1
Query:   43 LLMFAGKYECDFIAIQETRRDGKTTIKAPAAGYVVHCSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIFQHRAATTFIVGYAPTETAVTCH------KSKFLKELRSTVAEVPVSDHLILMMDDNALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFSTPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVRNITV--YPKMKSDHRLISASICL 777
            ++       CD I +QETRR+G+ +I     GYV+  SG   G   K G+ GVG+A++E++  ++  +G   E  S RL+KVR+        TF+VGYAPTET  T        K  F   L + + EV   DHL+++MD NA TG R   GG  D +VLG YG+  +N+NG RL   A++ + S+ +T+F TPK G  +        K   ++ LDFIL+RQ DRR VRN++V       SDH L+  ++ L
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGG--VQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249          
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 7.280e-40
Identity = 99/251 (39.44%), Postives = 141/251 (56.18%), Query Frame = 1
Query:   43 LLMFAGKYECDFIAIQETRRDGKTTIKAPAAGYVVHCSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIFQHRAATTFIVGYAPTETAVTCH------KSKFLKELRSTVAEVPVSDHLILMMDDNALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFSTPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVRNITV--YPKMKSDHRLISASI 771
            ++      +CD I +QETRR G+  I     GYV+  SG   G   K G+ GVG+A++E++  ++   G   E  S RL+KVR+        TF+VGYAPTETA          K  F   L + + EV   DHL+++MD NA TG R +G    D +++G YG+  +N+NG RL+  AA+ + S+++T+F TPK G +         KE HR  LDFIL+RQ DRRLVRN +V       SDH L+  ++
Sbjct:    3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTV 247          
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 7.430e-40
Identity = 99/251 (39.44%), Postives = 141/251 (56.18%), Query Frame = 1
Query:   43 LLMFAGKYECDFIAIQETRRDGKTTIKAPAAGYVVHCSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIFQHRAATTFIVGYAPTETAVTCH------KSKFLKELRSTVAEVPVSDHLILMMDDNALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFSTPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVRNITV--YPKMKSDHRLISASI 771
            ++      +CD I +QETRR G+  I     GYV+  SG   G   K G+ GVG+A++E++  ++   G   E  S RL+KVR+        TF+VGYAPTETA          K  F   L + + EV   DHL+++MD NA TG R +G    D +++G YG+  +N+NG RL+  AA+ + S+++T+F TPK G +         KE HR  LDFIL+RQ DRRLVRN +V       SDH L+  ++
Sbjct:  115 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTV 359          
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.830e-39
Identity = 93/253 (36.76%), Postives = 139/253 (54.94%), Query Frame = 1
Query:   43 LLMFAGKYECDFIAIQETRRDGKTTIKAPAAGYVVHCSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIFQHRAATTFIVGYAPTETAVTCH------KSKFLKELRSTVAEVPVSDHLILMMDDNALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFSTPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVRNITV--YPKMKSDHRLISASICL 777
            ++       CD I +QETRR+G+ ++     GYV+  SG   G   K G+ GVG+A++E++  ++   G   E  + RL+KVR+        TF+VGYAPTET  T        K  F   L   + EV   DHL+++MD NA TG R +G    D +++G YG+  +N+NG RL+  A+  + S+ +T+F TPK G  +        K   ++ LDFIL+RQ DRR VRN++V       SDH L+  ++ L
Sbjct:    3 VMQLCSATGCDVIGLQETRREGQGSLAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPKGG--VQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249          
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.940e-39
Identity = 95/253 (37.55%), Postives = 142/253 (56.13%), Query Frame = 1
Query:   43 LLMFAGKYECDFIAIQETRRDGKTTIKAPAAGYVVHCSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIFQHRAATTFIVGYAPTETAVTCH------KSKFLKELRSTVAEVPVSDHLILMMDDNALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFSTPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVRNITV--YPKMKSDHRLISASICL 777
            ++       CD I +QETRR+G+ +I     GYV+  SG   G   K G+ GVG+A++E++  ++  +G   E  S RL+KVR+        TF+VGYAPTET  T        K  F   L + + EV   DHL+++MD NA TG R +G    D +++G YG+  +N+NG RL+  A++ + S+ +T+F TPK G  +        K   ++ LDFIL+RQ DRR VRN++V       SDH L+  ++ L
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGG--VQHTFQSSNKGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249          
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 5.150e-39
Identity = 94/253 (37.15%), Postives = 141/253 (55.73%), Query Frame = 1
Query:   43 LLMFAGKYECDFIAIQETRRDGKTTIKAPAAGYVVHCSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIFQHRAATTFIVGYAPTETAVTCH------KSKFLKELRSTVAEVPVSDHLILMMDDNALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFSTPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVRNITV--YPKMKSDHRLISASICL 777
            ++       CD I +QETRR G+ +I     GYV+  SG   G   K G+ GVG+A++E++  ++  +G   E  S RL+KVR+        TF+VGYAPTET  T        K  F   L + + EV   DHL+++MD NA TG R +G    D +++G YG+  +N+NG RL+  A++ + S+ +T+F TPK G  +        K   ++ LDFI +RQ DRR VRN++V       SDH+L+  ++ L
Sbjct:  200 VMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGG--VQHTFQSSNKGKEKYRLDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRL 446          
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 8.310e-39
Identity = 94/253 (37.15%), Postives = 142/253 (56.13%), Query Frame = 1
Query:   43 LLMFAGKYECDFIAIQETRRDGKTTIKAPAAGYVVHCSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIFQHRAATTFIVGYAPTETAVTCH------KSKFLKELRSTVAEVPVSDHLILMMDDNALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFSTPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVRNITV--YPKMKSDHRLISASICL 777
            ++       CD   +QETRR+G+ +I     GYV+  SG   G   K G+ GVG+A++E++  ++  +G   E  S RL+KVR+        TF++GYAPTET  T        K  F   L + + EV   DHL+++MD NA TG R +G    D +++G YG+  +N+NG RL+  A++ + S+ +T+F TPK G +         KE +R  LDFIL+RQ DRR VR+++V       SDH L+  ++ L
Sbjct:    3 VMQICSATGCDVTGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGAQHTFQSSNTGKEKYR--LDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRL 249          
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.450e-38
Identity = 93/230 (40.43%), Postives = 131/230 (56.96%), Query Frame = 1
Query:   43 LLMFAGKYECDFIAIQETRRDGKTTIKAPAAGYVVHCSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIFQHRAATTFIVGYAPTETAVTCH------KSKFLKELRSTVAEVPVSDHLILMMDDNALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFSTPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVR 714
            ++      +CD I +QETRR G+  I     GYV+  SG   G   K G+ GVG+A++E++  ++   G   E  S RL+KVR+        TF+VGYAPTETA          K  F   L + + EV   DHL+++MD NA TG R +G    D +++G YG+  +N+NG RL+  AA+ + S+++T+  TPK G        +G KE HR  LDFIL+RQ DRRLVR
Sbjct:    3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYIRTPK-GVHTFQSSNKG-KEKHR--LDFILMRQTDRRLVR 224          
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Match: A0A6H5KCV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV1_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.550e-38
Identity = 93/249 (37.35%), Postives = 139/249 (55.82%), Query Frame = 1
Query:   55 AGKYECDFIAIQETRRDGKTTIKAPAAGYVVHCSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIFQHRAATTFIVGYAPTETAVTCH------KSKFLKELRSTVAEVPVSDHLILMMDDNALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFSTPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVRNITV--YPKMKSDHRLISASICL 777
            A + +  F    ETRR+G+ +I     GYV+  SG   G   K G+ GVG+A++E++  ++  +G   E  S RL+KVR+        TF+VGYAPTET  T        K  F   L + + EV   DHL+++MD NA TG R +G    D +++G YG+  +N+NG RL+  A++ + S+ +T+  TPK G  +        K   ++CLDFIL+RQ DRR VRN++V       SDH L+  ++ L
Sbjct:   39 AREGDLSFGTFNETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDDNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYSRTPKGG--VQQTFQSSNKGKEKYCLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRL 281          
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.920e-38
Identity = 94/253 (37.15%), Postives = 141/253 (55.73%), Query Frame = 1
Query:   43 LLMFAGKYECDFIAIQETRRDGKTTIKAPAAGYVVHCSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIFQHRAATTFIVGYAPTETAVTCH------KSKFLKELRSTVAEVPVSDHLILMMDDNALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFSTPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVRNITV--YPKMKSDHRLISASICL 777
            ++       CD I +QETRR+G+ +I     GYV+  SG   G   K G+ GVG+A++E++  ++  +G   E  S RL+KVR+        TF+V YAPTET  T        K  F   L + + EV   DHL+++MD NA TG R +G    D +++G YG+  +N+NG RL+  A++ + S+ +T+F TPK G  +        K   ++ LDFIL+RQ DRR VRN++V       SDH L+  ++ L
Sbjct:  682 VMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGG--VQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 928          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50474.12290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBZ6_9PHAE4.080e-4238.74Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KC90_9PHAE7.280e-4039.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE7.430e-4039.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K259_9PHAE1.830e-3936.76Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L7A7_9PHAE2.940e-3937.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3Q1_9PHAE5.150e-3937.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSV0_9PHAE8.310e-3937.15Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KP87_9PHAE1.450e-3840.43Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KCV1_9PHAE3.550e-3837.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1H7_9PHAE3.920e-3837.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50474contigH-elongata_contig50474:1156..1935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score98.2
Seed ortholog evalue6e-18
Seed eggNOG ortholog6412.HelroP161862
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BPUP@33208,3D6HY@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size780
Cds size780
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930829.8968077-CDS-H-elongata_contig50474:1155..19351622930829.8968077-CDS-H-elongata_contig50474:1155..1935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50474 1156..1935 -
1691679588.6360023-CDS-H-elongata_contig50474:1155..19351691679588.6360023-CDS-H-elongata_contig50474:1155..1935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50474 1156..1935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50474.12290.1prot_H-elongata_contig50474.12290.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50474 1156..1935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50474.12290.1

>prot_H-elongata_contig50474.12290.1 ID=prot_H-elongata_contig50474.12290.1|Name=mRNA_H-elongata_contig50474.12290.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
MPERGTNHPGRAEDLLMFAGKYECDFIAIQETRRDGKTTIKAPAAGYVVH
CSGHCDGDGGKPGILGVGLAVRESIASALDPDGIVPEHTSARLLKVRVIF
QHRAATTFIVGYAPTETAVTCHKSKFLKELRSTVAEVPVSDHLILMMDDN
ALTGGRGEGGGLGDVRVLGPYGKYTLNDNGSRLVACAAEYKPSIVSTFFS
TPKRGGRLDAVIYEGPKEYHRWCLDFILVRQHDRRLVRNITVYPKMKSDH
RLISASICLL
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mRNA from alignment at H-elongata_contig50474:1156..1935-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50474.12290.1 ID=mRNA_H-elongata_contig50474.12290.1|Name=mRNA_H-elongata_contig50474.12290.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig50474:1156..1935- (Himanthalia elongata Himel1 dioecious)
ATGCCCGAGAGAGGGACCAACCACCCGGGGCGAGCGGAGGATCTTTTGAT GTTCGCTGGGAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCGCC GCGATGGAAAGACAACCATCAAAGCACCAGCCGCTGGTTATGTCGTGCAC TGCAGCGGTCATTGCGATGGTGATGGAGGTAAACCAGGAATACTTGGTGT TGGTCTGGCTGTCAGGGAGTCTATCGCTAGCGCACTCGACCCAGATGGCA TTGTGCCGGAACACACCAGTGCGCGGCTGCTGAAGGTGAGGGTGATTTTC CAACACAGAGCCGCAACAACCTTCATCGTGGGATACGCTCCGACTGAAAC AGCAGTCACCTGTCACAAGTCTAAGTTCTTGAAGGAACTACGCAGCACTG TTGCTGAGGTACCTGTCAGCGACCACCTGATTTTAATGATGGATGATAAC GCCCTCACGGGAGGAAGGGGAGAGGGAGGTGGACTAGGGGATGTGCGAGT TTTGGGACCATACGGCAAATACACTCTCAATGACAACGGGTCGCGACTTG TAGCATGTGCTGCCGAGTATAAGCCGTCGATTGTCAGCACCTTTTTCAGC ACGCCGAAGCGTGGGGGAAGGTTGGATGCGGTCATATACGAGGGGCCGAA AGAATACCACCGCTGGTGCCTGGACTTCATCCTGGTACGCCAGCATGACC GCAGGCTCGTCCGGAATATCACTGTCTACCCGAAGATGAAATCAGACCAC CGCTTGATTTCAGCTTCCATCTGCCTCCTA
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Coding sequence (CDS) from alignment at H-elongata_contig50474:1156..1935-

>mRNA_H-elongata_contig50474.12290.1 ID=mRNA_H-elongata_contig50474.12290.1|Name=mRNA_H-elongata_contig50474.12290.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig50474:1156..1935- (Himanthalia elongata Himel1 dioecious)
ATGCCCGAGAGAGGGACCAACCACCCGGGGCGAGCGGAGGATCTTTTGAT
GTTCGCTGGGAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCGCC
GCGATGGAAAGACAACCATCAAAGCACCAGCCGCTGGTTATGTCGTGCAC
TGCAGCGGTCATTGCGATGGTGATGGAGGTAAACCAGGAATACTTGGTGT
TGGTCTGGCTGTCAGGGAGTCTATCGCTAGCGCACTCGACCCAGATGGCA
TTGTGCCGGAACACACCAGTGCGCGGCTGCTGAAGGTGAGGGTGATTTTC
CAACACAGAGCCGCAACAACCTTCATCGTGGGATACGCTCCGACTGAAAC
AGCAGTCACCTGTCACAAGTCTAAGTTCTTGAAGGAACTACGCAGCACTG
TTGCTGAGGTACCTGTCAGCGACCACCTGATTTTAATGATGGATGATAAC
GCCCTCACGGGAGGAAGGGGAGAGGGAGGTGGACTAGGGGATGTGCGAGT
TTTGGGACCATACGGCAAATACACTCTCAATGACAACGGGTCGCGACTTG
TAGCATGTGCTGCCGAGTATAAGCCGTCGATTGTCAGCACCTTTTTCAGC
ACGCCGAAGCGTGGGGGAAGGTTGGATGCGGTCATATACGAGGGGCCGAA
AGAATACCACCGCTGGTGCCTGGACTTCATCCTGGTACGCCAGCATGACC
GCAGGCTCGTCCGGAATATCACTGTCTACCCGAAGATGAAATCAGACCAC
CGCTTGATTTCAGCTTCCATCTGCCTCCTAATGCCCGAGAGAGGGACCAA
CCACCCGGGGCGAGCGGAGGATCTTTTGATGTTCGCTGGGAAGTACGAGT
GCGACTTCATCGCCATACAGGAGACTCGCCGCGATGGAAAGACAACCATC
AAAGCACCAGCCGCTGGTTATGTCGTGCACTGCAGCGGTCATTGCGATGG
TGATGGAGGTAAACCAGGAATACTTGGTGTTGGTCTGGCTGTCAGGGAGT
CTATCGCTAGCGCACTCGACCCAGATGGCATTGTGCCGGAACACACCAGT
GCGCGGCTGCTGAAGGTGAGGGTGATTTTCCAACACAGAGCCGCAACAAC
CTTCATCGTGGGATACGCTCCGACTGAAACAGCAGTCACCTGTCACAAGT
CTAAGTTCTTGAAGGAACTACGCAGCACTGTTGCTGAGGTACCTGTCAGC
GACCACCTGATTTTAATGATGGATGATAACGCCCTCACGGGAGGAAGGGG
AGAGGGAGGTGGACTAGGGGATGTGCGAGTTTTGGGACCATACGGCAAAT
ACACTCTCAATGACAACGGGTCGCGACTTGTAGCATGTGCTGCCGAGTAT
AAGCCGTCGATTGTCAGCACCTTTTTCAGCACGCCGAAGCGTGGGGGAAG
GTTGGATGCGGTCATATACGAGGGGCCGAAAGAATACCACCGCTGGTGCC
TGGACTTCATCCTGGTACGCCAGCATGACCGCAGGCTCGTCCGGAATATC
ACTGTCTACCCGAAGATGAAATCAGACCACCGCTTGATTTCAGCTTCCAT
CTGCCTCCTA
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