mRNA_H-elongata_contig50415.12276.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Match: A0A015JDH1_RHIIW (Cmk1p n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015JDH1_RHIIW) HSP 1 Score: 87.0 bits (214), Expect = 8.920e-16 Identity = 65/247 (26.32%), Postives = 121/247 (48.99%), Query Frame = 1
Query: 46 AQATSNLAQHMVAHHKSFPAYVEHMKKEALKTVANTQPRDKGIMGFIKREDESALHQR----LILGFIVDGHQSISVVEEEGYKTMMRGFTKRPSLQIPCRRTMHKLLTHTAVVAREKLKAL--SAGQEVSLTCDGWTSGNGLAMLGVTGHWINKDWKLVCACFDVSELAGSHDGIRLAAALKAVMASYDILETNVTAVTTDTAANQKNA--IMQQTN--MEWLPCICHVLEL-VMGVLMTRFKEVK 753
+ +TSN+ H+ A H E + +T ++ F K +Q L+L FI+ Q +++ +G++ ++ F PS IPC +T+ L+T + ++L L ++ + +S+T D WT+ + +G+TGHW+N+++K + + H + +++ L+ + Y LE + V TD +N K A I+ Q N ++ LPC+ H L+L V+ L + K+VK
Sbjct: 107 SSSTSNMKYHLNAAHNKTEGDEEKEESIIHQTTIDSM--------FSKARSHGKSYQHKLNTLLLEFIITDSQPFHILKSKGFRKLL--FALDPSYSIPCDKTIKNLITEVYKLGVKELLTLVINSCEFISITTDLWTARSKTGYIGITGHWVNENFKPYDILIGIKSILYPHTAVAISSYLEKYIEEYR-LENKIVCVVTDNGSNMKAAVNILNQKNDKIQRLPCVAHTLQLTVIKALKSINKQVK 342
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Match: UPI001AADA268 (E3 SUMO-protein ligase ZBED1-like n=5 Tax=Rana temporaria TaxID=8407 RepID=UPI001AADA268) HSP 1 Score: 84.0 bits (206), Expect = 8.800e-15 Identity = 64/240 (26.67%), Postives = 113/240 (47.08%), Query Frame = 1
Query: 25 CTKPVIMAQATSNLAQHMVAHHKSFPAYVEHMKKEALKTVANTQPRDKGIMGFIKREDE------SALHQRLILGFIVDGHQSISVVEEEGYKTMMRGFTKRPSLQIPCRRTMHKLLTHTAVVAREKL----KALSAGQEVSLTCDGWTSGNGLAMLGVTGHWINKDWKLVCACFDVSELAGSHDGIRLAAALKAVMASYDILETNVTAVTTDTAANQKNAIMQQTNMEWLPCICHVLEL 714
C K + + ++L H+ H P +H+ + + QP I F+ + ++ SA + I +I + ++V+++G +T++R + + +P RRT+ ++ + EKL KA+ + ++LT D WTS N + G+TGHWI+ DWKL + H +A K A+++I + + + TD A N AI QT+ +PCI H L+L
Sbjct: 42 CNKQLAFRGSNTSLTYHLQHKH---PLKYQHVVNSDWQKSSPVQP----ISNFMSQSNKPVSAKVSADLKIAIAQWIASSGRPTAIVDDDGLQTVLRIALQNQTYNLPSRRTIDAVIGQ---MYNEKLTQHKKAIESIHSIALTTDFWTSNNNESYCGITGHWIDSDWKLTSVALGCLLVDERHTAENVAGFYKEFAATWNISD-KICCIITDNARNMVAAI-GQTDFSHIPCIAHCLQL 269
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Match: UPI000BBDE0A5 (zinc finger BED domain-containing protein 4-like n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBDE0A5) HSP 1 Score: 83.6 bits (205), Expect = 1.140e-14 Identity = 70/237 (29.54%), Postives = 117/237 (49.37%), Query Frame = 1
Query: 55 TSNLAQHMVAHHKSFPAYVEHMKKEALKTVANTQPRDKGIMGFIKREDESALHQ-------RLILGFIVDGHQSISVVEEEGYKTMMRGFTKRPSLQIPCRR-----TMHKLLTHTAVVAREKLKALSAGQEVSLTCDGWTSG-NGLAMLGVTGHWINKD-WKLVCACFDVSELAGSHDGIRLAAALKAVMASYDILETNVTAVTTDTAANQKNAIMQQTNMEWLPCICHVLELVMG 723
T+NL +H+ HH EH + A+K + R + ++ +R+ + + +L FIV Q +SVVE EG+ ++M R SL P RR + +L + +KLK + Q +S T D WTS + ++++ +T HWI++D + L CA V + GSH+ +AA++ ++ + I V + D A+N K A MQ ++ L C H L+LV+
Sbjct: 55 TTNLIKHLQKHHPK-----EHDEFLAMKGLKAQTSRQESLLQSFERQGKLSPDNVKAKEITEKVLNFIVLDDQPLSVVENEGFCSLMEYLQPRYSL--PSRRYLSETALPELYNRVSTKLADKLKGV---QNLSFTTDIWTSDVSPMSLISLTVHWIDRDTYGLCCAVLQVKKCRGSHNRATIAASITEMLNHWGIPLEKVHVILRDNASNMK-AAMQDLSVSNLGCFAHSLQLVVN 280
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Match: A0A8C4WWM8_EPTBU (BED-type domain-containing protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4WWM8_EPTBU) HSP 1 Score: 82.8 bits (203), Expect = 2.100e-14 Identity = 65/241 (26.97%), Postives = 116/241 (48.13%), Query Frame = 1
Query: 25 CTKPVIMAQATSNLAQHMVAHHKSFPAYVE-HMKKEALKTVANTQPRDKGIMGFIKREDESALHQRL---ILGFIVDGHQSISVVEEEGYKTMMRGFTKRPSLQIPCRRTMHKLLT---HTAVVAREKLKALSAGQEVSLTCDGWTSGNGLAMLGVTGHWINKDWKLVCACFDVSELAGSHDGIRLAAALKAVMASYDILETNVTAVTTDTAANQKNAIMQQTNMEWLPCICHVLELVMGV 726
C+K + +TS + +H+ + H +E H K++ + ++T SA H+ L + FIV G + I VEEEG++ M++ F +R +L P R++ ++ + V + L V+LT D WTS +GVT H++N+DW + + +EL HD +A+A+ ++ ++ L+ ++AV TD A N A+ + + C H L L++ V
Sbjct: 56 CSKKLSYMSSTSVMHKHLKSFHPREARGMEGHAKRDRDQLSSSTH-----FQSATPYAAGSARHKELTTAVARFIVKGMRPIYTVEEEGFRNMLKIFDQRYTL--PSRKSFSSVIIPQLYNNVKEESVVPQLQEASYVALTTDMWTSRASDNYIGVTAHFVNRDWSIGHFTLENAELPPPHDYEHIASAMHEILEDWN-LKDKLSAVVTDNATNITEAVREGLGFPHITCFGHTLNLMVKV 288
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Match: E2A185_CAMFO (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Camponotus floridanus TaxID=104421 RepID=E2A185_CAMFO) HSP 1 Score: 78.6 bits (192), Expect = 2.110e-13 Identity = 55/174 (31.61%), Postives = 89/174 (51.15%), Query Frame = 1
Query: 223 ILGFIVDGHQSISVVEEEGYKTMMRGFTKRPSLQIPCRRTMHKLLTHTAVVAREKLKA-LSAGQEVSLTCDGWTSGNGLAMLGVTGHWINKDWKLVCACFDVSELAGSHDGIRLAAALKAVMASYDILETNVTAVTTDTAANQKNAIMQQTNME-WLPCICHVLE-LVMGVLMT 735
IL I +S V+ EG+K +M+ T P +P R+T+ +L+ V +E+ A L S+TCD WT + + LGVT H++ ++ C V L+ +H L L +V+ +++ ++ +TAV TD+A N K A+ + + L C H L LV VL+T
Sbjct: 10 ILYMIAVDKMPLSTVQNEGFKLLMK--TVAPLYTVPSRKTVTRLIDVRYDVLKERFIATLKEIDSYSITCDNWTDISNQSYLGVTIHYVTPQIEMKSVCVGVFPLSENHTSQYLGECLTSVIKDFNLEQSRITAVVTDSATNIKKAVRDFVDQDKHLACFAHTLSHLVPDVLVT 181
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Match: A0A814NDW3_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814NDW3_9BILA) HSP 1 Score: 77.8 bits (190), Expect = 2.920e-13 Identity = 48/163 (29.45%), Postives = 87/163 (53.37%), Query Frame = 1
Query: 256 ISVVEEEGYKTMMRGFTKRPSLQIPCRRTMHK-LLTHTAVVAREKLK-ALSAGQEVSLTCDGWTSGNGLAMLGVTGHWINKDWKLVCACFDVSELAGSHDGIRLAAALKAVMASYDILETNVTAVTTDTAANQKNAIMQQTNMEWLPCICHVLELVMGVLMTR 738
+S+V+ + ++ +++ P +PCR+T K L+ +V+ + + LS SLTCD WTS + L+ LGVT H++NKD+ L + L H L LK ++ + L+ V + +D+ +N K AI + N +++PC+ H + L + +M+
Sbjct: 13 VSIVDRDEFRNLLKDAI--PGYSVPCRQTFTKNLIPQKSVMVKSSIAHELSGVNSFSLTCDAWTSNSNLSYLGVTCHYLNKDFILTSRLLSLKYLEEDHKSEYLFEVLKEIINEW-YLDGKVFKIVSDSGSNMKGAITR-FNDKFVPCVAHRINLCVNDIMSE 171
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Match: A0A2I4CE76_9TELE (zinc finger BED domain-containing protein 1-like n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CE76_9TELE) HSP 1 Score: 79.3 bits (194), Expect = 3.200e-13 Identity = 71/247 (28.74%), Postives = 105/247 (42.51%), Query Frame = 1
Query: 1 KAKCTVEGCTKPVIMAQATSNLAQHMVAHHKSFPAYVEHMKKEA----LKTVANTQPRDKGIMGFIKREDESALHQRLILGFIVDGHQSISVVEEEGYKTMMRGFTKRPSLQIPCRR-----TMHKLLTHTAVVAREKLKALSAGQEVSLTCDGWTSGNGLAMLGVTGHWINKDWKLVCACFDVSELAGSHDGIRLAAALKAVMASYDILETNVTAVTTDTAANQKNAIMQQTNMEWLPCICHVLEL 714
KA + C V + T+NL HM HH +M K LK P+ + ES ++ FI + +SVVE EG++ MM+ T P IP R+ + KL T V + +++L++ + V+LTCD WTS + + +T H I +WKL + SH G LA L +A + L+ V TD A+N A +M + C H L L
Sbjct: 36 KAHAVCKICNARVKYSGNTTNLRAHMARHHSDVQLATANMTKRVESAQLKLTDVQTPKLPSSSARATKITESVIY------FICKDMRPLSVVENEGFRNMMK--TLEPRYSIPSRQHITDIALPKLYTE---VKAKVMESLNSAERVALTCDSWTSRATESYVTITAHHITDEWKLDSHVLQTRAMHDSHTGQNLAVVLGEAVAEWK-LDDKDPVVVTDNASNMTVAA-SLADMTHVQCFAHSLNL 269
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Match: UPI001C1AE18E (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1AE18E) HSP 1 Score: 78.2 bits (191), Expect = 4.350e-13 Identity = 63/251 (25.10%), Postives = 114/251 (45.42%), Query Frame = 1
Query: 52 ATSNLAQHMVAHHKSFPAYVEHMKKEALKTVANTQPRDKGIMGFIKREDESALHQRLILGFIVDGHQSISVVEEEGYKTMMRGFTKRPSLQIPCRRTMHKLLTHTAVVAREKLK--ALSAGQEVSLTCDGWTSGNGLAMLGVTGHWINKDWKLVCACFDVSELAGSHDGIRLAAALKAVMASYDILETNVTAVTTDTAANQKN--------AIMQQTNMEW----LPCICHVLELVMGVLMTRFK--EVKD 756
+T NL +H+ H V+ + E +K + + +D + + + Q ++ +I QS +VVE + ++R P++ +P T+ + + + R+ +K ++ +S T DGWTS N ++ LGVT H+I+KDWK+ D L GSH G +A + ++IL + A+T D AAN + +TN + C+ H++ L ++ K E +D
Sbjct: 104 STGNLNRHLKTHLDKIDPSVQR-QAEFMKKFIDGENKDSNTVF------SNEIFQEMLAAWIAVDDQSFTVVECPEFHQVIR--LCNPNVNLPSADTIRSDILNLYSIYRQDIKNQLQNSPGRLSFTLDGWTSPNNISFLGVTCHYIDKDWKINDILLDFICLKGSHSGENMAIEFSQCVKEFNILS-KIIAITADNAANNNTFLKELEEICVQNETNFHHKKNHVRCLAHIINLTTNEILKHVKAGEARD 344
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Match: UPI0010FB1D17 (zinc finger BED domain-containing protein 1-like isoform X1 n=3 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB1D17) HSP 1 Score: 79.0 bits (193), Expect = 4.510e-13 Identity = 70/277 (25.27%), Postives = 120/277 (43.32%), Query Frame = 1
Query: 4 AKCTVEGCTKPVIMAQATSNLAQHMVAHHKSFPAYVEHMKKEALKTVANTQ------PRDKG----IMGFIKREDESALHQR--------------LILGFIVDGHQSISVVEEEGYKTMMRGFTKRPSLQIPCRRTMHKLLTHTAVVAREKLKA-LSAGQEVSLTCDGWTSGNGLAMLGVTGHWINKDWKLVCACFDVSELAGSHDGIRLAAALKAVMASYDILETNVTAVTTDTAANQKNAIMQQTNME-WLPCICHVLELVMGVLMTRFKEVKD 756
A+C + C K T+NL QH+ A H F +K++ T ++ P+ K G + R DE+ + IL I +S V EG+K +M+ T P +P R+TM +L+ V +E+ A L +TCD WT + LGVT +++ ++ C V ++ +H L L +V+ +++ ++ +TAV TD+AAN K A+ + L C H L ++ ++ V++
Sbjct: 126 ARCNI--CNKVYKHGGNTTNLFQHLSASHALFCPQANRLKRKVHVTSGSSDDSTDDPPQSKRGKFKSQGKLIRIDEAFERTKSFLEGGKTSDKITNAILYMIAVDKMPLSTVHNEGFKLLMK--TVAPLYTVPSRKTMTRLIDVRYDVLKERFIATLKKLDSYCITCDNWTDVGNQSYLGVTIYYVTPQIEMKSGCVGVFPMSENHTSQYLGECLTSVIKDFNLEQSRITAVVTDSAANIKKAVRDFVGQDKHLACFAHTLSHLVPDVLVAMPTVRE 398
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Match: A0A6J2JE17_BOMMA (zinc finger BED domain-containing protein 1-like isoform X1 n=11 Tax=Obtectomera TaxID=104431 RepID=A0A6J2JE17_BOMMA) HSP 1 Score: 77.8 bits (190), Expect = 1.080e-12 Identity = 60/168 (35.71%), Postives = 86/168 (51.19%), Query Frame = 1
Query: 223 ILGFIVDGHQSISVVEEEGYKTMMRGFTKRPSLQIPCRRTMHKLLTHTAVVAREKLKA-LSAGQEVSLTCDGWTSG-NGLAMLGVTGHWINKDWKLVCACFDVSELAGSHDGIRLAAALKAVMASYDILETNVTAVTTDTAANQKNAI-MQQTNMEWLPCICHVLELV 717
+L I HQ S+VE EG+KT+M+ T P ++P R T+ + L V E +K LS+ ++++LT D W+ N + LG+T H+ D +L V EL H L+ L V + I + NVTAV TD AAN AI + + +PC H L LV
Sbjct: 162 LLFMICKDHQPFSIVENEGFKTLMK--TVAPQYKLPSRTTLRRWLDDKYEVISETIKKMLSSIEDITLTTDIWSDTLNMKSFLGITAHF-GIDIELYSVTLGVYELDERHTSDYLSEILLKVCQDWKIDQENVTAVVTDNAANIVKAIELAFGRRKHIPCFAHTLNLV 326 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50415.12276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50415.12276.1 >prot_H-elongata_contig50415.12276.1 ID=prot_H-elongata_contig50415.12276.1|Name=mRNA_H-elongata_contig50415.12276.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp KAKCTVEGCTKPVIMAQATSNLAQHMVAHHKSFPAYVEHMKKEALKTVANback to top mRNA from alignment at H-elongata_contig50415:2584..4106- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50415.12276.1 ID=mRNA_H-elongata_contig50415.12276.1|Name=mRNA_H-elongata_contig50415.12276.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1523bp|location=Sequence derived from alignment at H-elongata_contig50415:2584..4106- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50415:2584..4106- >mRNA_H-elongata_contig50415.12276.1 ID=mRNA_H-elongata_contig50415.12276.1|Name=mRNA_H-elongata_contig50415.12276.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig50415:2584..4106- (Himanthalia elongata Himel1 dioecious)back to top |