mRNA_H-elongata_contig115514.1227.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115514.1227.1
Unique NamemRNA_H-elongata_contig115514.1227.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115514.1227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115514contigH-elongata_contig115514:831..1247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.4913106-CDS-H-elongata_contig115514:830..12411622929669.4913106-CDS-H-elongata_contig115514:830..1241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115514 831..1241 -
1691679113.0693383-CDS-H-elongata_contig115514:830..12411691679113.0693383-CDS-H-elongata_contig115514:830..1241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115514 831..1241 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.5155332-UTR-H-elongata_contig115514:1241..12471622929669.5155332-UTR-H-elongata_contig115514:1241..1247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115514 1242..1247 -
1691679113.078294-UTR-H-elongata_contig115514:1241..12471691679113.078294-UTR-H-elongata_contig115514:1241..1247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115514 1242..1247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115514.1227.1prot_H-elongata_contig115514.1227.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115514 831..1241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115514.1227.1

>prot_H-elongata_contig115514.1227.1 ID=prot_H-elongata_contig115514.1227.1|Name=mRNA_H-elongata_contig115514.1227.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MQVKCKLCEKTFAGLTTRLAVHFAKMSGHHVAKCTNAIAQATALGKKYMS
DLDDKRQSTNKRAAESALVKSRQTFLRRKHDGEGKEAVDKAFARLLITTG
QSFRLGESVFFKDFVDTVIAHPNTPRRRSSRGIRTL*
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mRNA from alignment at H-elongata_contig115514:831..1247-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115514.1227.1 ID=mRNA_H-elongata_contig115514.1227.1|Name=mRNA_H-elongata_contig115514.1227.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig115514:831..1247- (Himanthalia elongata Himel1 dioecious)
GGGAAGATGCAGGTGAAGTGCAAGCTGTGCGAGAAGACGTTCGCTGGTCT
CACCACGAGATTGGCGGTTCACTTCGCGAAGATGTCAGGCCACCACGTAG
CCAAGTGCACCAATGCTATCGCTCAGGCTACCGCTCTCGGCAAGAAGTAC
ATGAGCGATCTTGACGACAAGCGCCAAAGCACGAACAAGCGCGCTGCCGA
GTCTGCCCTGGTGAAGTCGCGTCAGACGTTTCTTCGCCGAAAGCACGACG
GTGAGGGGAAGGAGGCTGTCGACAAAGCGTTTGCGCGGCTGCTGATCACC
ACGGGGCAGTCTTTTCGTCTCGGTGAGAGCGTGTTCTTCAAAGACTTTGT
GGACACGGTGATCGCCCACCCGAATACACCAAGAAGACGTTCATCGAGAG
GGATCCGGACTCTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig115514:831..1247-

>mRNA_H-elongata_contig115514.1227.1 ID=mRNA_H-elongata_contig115514.1227.1|Name=mRNA_H-elongata_contig115514.1227.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig115514:831..1247- (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGAAGTGCAAGCTGTGCGAGAAGACGTTCGCTGGTCTCACCAC
GAGATTGGCGGTTCACTTCGCGAAGATGTCAGGCCACCACGTAGCCAAGT
GCACCAATGCTATCGCTCAGGCTACCGCTCTCGGCAAGAAGTACATGAGC
GATCTTGACGACAAGCGCCAAAGCACGAACAAGCGCGCTGCCGAGTCTGC
CCTGGTGAAGTCGCGTCAGACGTTTCTTCGCCGAAAGCACGACGGTGAGG
GGAAGGAGGCTGTCGACAAAGCGTTTGCGCGGCTGCTGATCACCACGGGG
CAGTCTTTTCGTCTCGGTGAGAGCGTGTTCTTCAAAGACTTTGTGGACAC
GGTGATCGCCCACCCGAATACACCAAGAAGACGTTCATCGAGAGGGATCC
GGACTCTGTAGATGCAGGTGAAGTGCAAGCTGTGCGAGAAGACGTTCGCT
GGTCTCACCACGAGATTGGCGGTTCACTTCGCGAAGATGTCAGGCCACCA
CGTAGCCAAGTGCACCAATGCTATCGCTCAGGCTACCGCTCTCGGCAAGA
AGTACATGAGCGATCTTGACGACAAGCGCCAAAGCACGAACAAGCGCGCT
GCCGAGTCTGCCCTGGTGAAGTCGCGTCAGACGTTTCTTCGCCGAAAGCA
CGACGGTGAGGGGAAGGAGGCTGTCGACAAAGCGTTTGCGCGGCTGCTGA
TCACCACGGGGCAGTCTTTTCGTCTCGGTGAGAGCGTGTTCTTCAAAGAC
TTTGTGGACACGGTGATCGCCCACCCGAATACACCAAGAAGACGTTCATC
GAGAGGGATCCGGACTCTGTAG
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